ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 916 |
| AatII | GACGTC | 1 cut(s) | 883 |
| Acc36I | ACCTGC | 1 cut(s) | 916 |
| AccB1I | GGYRCC | 1 cut(s) | 928 |
| AccI | GTMKAC | 1 cut(s) | 1051 |
| AccII | CGCG | 2 cut(s) | 771, 1793 |
| AclI | AACGTT | 1 cut(s) | 2014 |
| AclWI | GGATC | 2 cut(s) | 62, 819 |
| AcsI | RAATTY | 3 cut(s) | 862, 1898, 2045 |
| AcuI | CTGAAG | 2 cut(s) | 605, 1804 |
| AcyI | GRCGYC | 3 cut(s) | 248, 880, 1069 |
| AfaI | GTAC | 5 cut(s) | 577, 1335, 1396, 1486, 1722 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 349, 947, 1024 |
| AgsI | TTSAA | 2 cut(s) | 379, 688 |
| AjiI | CACGTC | 1 cut(s) | 1987 |
| Alw21I | GWGCWC | 2 cut(s) | 723, 1446 |
| Alw26I | GTCTC | 6 cut(s) | 390, 494, 1151, 1921, 1988, 1996 |
| AlwI | GGATC | 2 cut(s) | 62, 819 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1001 |
| Ama87I | CYCGRG | 3 cut(s) | 646, 837, 1119 |
| AoxI | GGCC | 1 cut(s) | 142 |
| ApaI | GGGCCC | 1 cut(s) | 146 |
| ApeKI | GCWGC | 2 cut(s) | 851, 1448 |
| ApoI | RAATTY | 3 cut(s) | 862, 1898, 2045 |
| AseI | ATTAAT | 1 cut(s) | 1134 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 129 |
| AspLEI | GCGC | 3 cut(s) | 241, 856, 1534 |
| AspS9I | GGNCC | 5 cut(s) | 142, 143, 1015, 1233, 2022 |
| AsuC2I | CCSGG | 4 cut(s) | 146, 350, 647, 648 |
| AsuHPI | GGTGA | 7 cut(s) | 1151, 1222, 1270, 1416, 1682, 1770, 2028 |
| AsuII | TTCGAA | 2 cut(s) | 2010, 2088 |
| AsuNHI | GCTAGC | 1 cut(s) | 404 |
| AvaI | CYCGRG | 3 cut(s) | 646, 837, 1119 |
| AvaII | GGWCC | 3 cut(s) | 1015, 1233, 2022 |
| AxyI | CCTNAGG | 1 cut(s) | 138 |
| BaeGI | GKGCMC | 1 cut(s) | 146 |
| BanI | GGYRCC | 1 cut(s) | 928 |
| BanII | GRGCYC | 1 cut(s) | 146 |
| BauI | CACGAG | 1 cut(s) | 1488 |
| BbsI | GAAGAC | 2 cut(s) | 1047, 1807 |
| Bbv12I | GWGCWC | 2 cut(s) | 723, 1446 |
| BbvI | GCAGC | 2 cut(s) | 838, 1435 |
| BccI | CCATC | 8 cut(s) | 58, 404, 538, 946, 976, 1006, 1207, 1783 |
| BceAI | ACGGC | 3 cut(s) | 300, 1082, 1796 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 910, 944, 1671, 1705 |
| BciVI | GTATCC | 1 cut(s) | 485 |
| BcnI | CCSGG | 4 cut(s) | 146, 350, 647, 648 |
| BcoDI | GTCTC | 6 cut(s) | 390, 494, 1151, 1921, 1988, 1996 |
| BfaI | CTAG | 4 cut(s) | 162, 263, 405, 1880 |
| BfmI | CTRYAG | 3 cut(s) | 58, 1624, 1680 |
| BfoI | RGCGCY | 1 cut(s) | 242 |
| BfuAI | ACCTGC | 1 cut(s) | 916 |
| BfuI | GTATCC | 1 cut(s) | 485 |
| BglII | AGATCT | 2 cut(s) | 7, 158 |
| BisI | GCNGC | 3 cut(s) | 402, 852, 1449 |
| BlsI | GCNGC | 3 cut(s) | 403, 853, 1450 |
| BmcAI | AGTACT | 1 cut(s) | 1722 |
| Bme1390I | CCNGG | 4 cut(s) | 146, 350, 647, 648 |
| Bme18I | GGWCC | 3 cut(s) | 1015, 1233, 2022 |
| BmeT110I | CYCGRG | 3 cut(s) | 646, 837, 1119 |
| BmgBI | CACGTC | 1 cut(s) | 1987 |
| BmgT120I | GGNCC | 5 cut(s) | 142, 143, 1015, 1233, 2022 |
| BmiI | GGNNCC | 5 cut(s) | 144, 347, 930, 1234, 1789 |
| BmrFI | CCNGG | 4 cut(s) | 146, 350, 647, 648 |
| BmsI | GCATC | 3 cut(s) | 205, 912, 2042 |
| BmtI | GCTAGC | 1 cut(s) | 408 |
| BoxI | GACNNNNGTC | 2 cut(s) | 506, 1047 |
| BpiI | GAAGAC | 2 cut(s) | 1047, 1807 |
| BpmI | CTGGAG | 2 cut(s) | 1298, 1852 |
| Bpu14I | TTCGAA | 2 cut(s) | 2010, 2088 |
| BpuEI | CTTGAG | 2 cut(s) | 317, 1945 |
| BpuMI | CCSGG | 4 cut(s) | 146, 350, 647, 648 |
| BsaHI | GRCGYC | 3 cut(s) | 248, 880, 1069 |
| BsaJI | CCNNGG | 2 cut(s) | 368, 646 |
| BsaWI | WCCGGW | 1 cut(s) | 342 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 59, 89, 1837, 1867 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 349, 947, 1024 |
| Bse1I | ACTGG | 3 cut(s) | 1375, 1465, 1835 |
| Bse21I | CCTNAGG | 1 cut(s) | 138 |
| Bse3DI | GCAATG | 1 cut(s) | 526 |
| BseDI | CCNNGG | 2 cut(s) | 368, 646 |
| BseGI | GGATG | 6 cut(s) | 69, 220, 549, 957, 1017, 1611 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 349, 947, 1024 |
| BseMI | GCAATG | 1 cut(s) | 526 |
| BseMII | CTCAG | 7 cut(s) | 129, 1083, 1719, 1753, 1886, 1991, 2054 |
| BseNI | ACTGG | 3 cut(s) | 1375, 1465, 1835 |
| BseRI | GAGGAG | 3 cut(s) | 125, 128, 992 |
| BseSI | GKGCMC | 1 cut(s) | 146 |
| BseXI | GCAGC | 2 cut(s) | 838, 1435 |
| BseYI | CCCAGC | 1 cut(s) | 1228 |
| BsgI | GTGCAG | 7 cut(s) | 1339, 1344, 1434, 1462, 1487, 1562, 1632 |
| Bsh1236I | CGCG | 2 cut(s) | 771, 1793 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1051 |
| BshFI | GGCC | 1 cut(s) | 144 |
| BshNI | GGYRCC | 1 cut(s) | 928 |
| BsiEI | CGRYCG | 1 cut(s) | 1051 |
| BsiHKAI | GWGCWC | 2 cut(s) | 723, 1446 |
| BsiHKCI | CYCGRG | 3 cut(s) | 646, 837, 1119 |
| BsiSI | CCGG | 8 cut(s) | 146, 343, 349, 647, 932, 1034, 1884, 1934 |
| BslFI | GGGAC | 4 cut(s) | 241, 663, 1006, 1861 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 349, 947, 1024 |
| BsmAI | GTCTC | 6 cut(s) | 390, 494, 1151, 1921, 1988, 1996 |
| BsmBI | CGTCTC | 1 cut(s) | 1996 |
| BsmFI | GGGAC | 4 cut(s) | 241, 663, 1006, 1861 |
| BsnI | GGCC | 1 cut(s) | 144 |
| BsoBI | CYCGRG | 3 cut(s) | 646, 837, 1119 |
| Bsp119I | TTCGAA | 2 cut(s) | 2010, 2088 |
| Bsp120I | GGGCCC | 1 cut(s) | 142 |
| Bsp1286I | GDGCHC | 3 cut(s) | 146, 723, 1446 |
| Bsp143I | GATC | 8 cut(s) | 7, 54, 158, 421, 811, 1056, 1735, 1989 |
| Bsp68I | TCGCGA | 1 cut(s) | 771 |
| BspANI | GGCC | 1 cut(s) | 144 |
| BspCNI | CTCAG | 7 cut(s) | 130, 1084, 1718, 1752, 1885, 1992, 2055 |
| BspFNI | CGCG | 2 cut(s) | 771, 1793 |
| BspLI | GGNNCC | 5 cut(s) | 144, 347, 930, 1234, 1789 |
| BspMAI | CTGCAG | 2 cut(s) | 62, 1684 |
| BspMI | ACCTGC | 1 cut(s) | 916 |
| BspOI | GCTAGC | 1 cut(s) | 408 |
| BspPI | GGATC | 2 cut(s) | 62, 819 |
| BspT104I | TTCGAA | 2 cut(s) | 2010, 2088 |
| BspT107I | GGYRCC | 1 cut(s) | 928 |
| BsrDI | GCAATG | 1 cut(s) | 526 |
| BsrI | ACTGG | 3 cut(s) | 1375, 1465, 1835 |
| BssECI | CCNNGG | 2 cut(s) | 368, 646 |
| BssMI | GATC | 8 cut(s) | 7, 54, 158, 421, 811, 1056, 1735, 1989 |
| BssNI | GRCGYC | 3 cut(s) | 248, 880, 1069 |
| BssSI | CACGAG | 1 cut(s) | 1488 |
| BssT1I | CCWWGG | 1 cut(s) | 368 |
| Bst2BI | CACGAG | 1 cut(s) | 1488 |
| Bst4CI | ACNGT | 6 cut(s) | 713, 740, 1049, 1081, 1333, 1441 |
| Bst6I | CTCTTC | 1 cut(s) | 1736 |
| BstACI | GRCGYC | 3 cut(s) | 248, 880, 1069 |
| BstBI | TTCGAA | 2 cut(s) | 2010, 2088 |
| BstC8I | GCNNGC | 3 cut(s) | 406, 1446, 1913 |
| BstDEI | CTNAG | 7 cut(s) | 138, 1092, 1705, 1739, 1872, 2000, 2063 |
| BstF5I | GGATG | 6 cut(s) | 69, 220, 549, 957, 1017, 1611 |
| BstFNI | CGCG | 2 cut(s) | 771, 1793 |
| BstH2I | RGCGCY | 1 cut(s) | 242 |
| BstHHI | GCGC | 3 cut(s) | 241, 856, 1534 |
| BstKTI | GATC | 8 cut(s) | 10, 57, 161, 424, 814, 1059, 1738, 1992 |
| BstMAI | GTCTC | 6 cut(s) | 390, 494, 1151, 1921, 1988, 1996 |
| BstMBI | GATC | 8 cut(s) | 7, 54, 158, 421, 811, 1056, 1735, 1989 |
| BstMCI | CGRYCG | 1 cut(s) | 1051 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 247, 401, 538, 1715 |
| BstNSI | RCATGY | 1 cut(s) | 638 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 506, 1047 |
| BstSCI | CCNGG | 4 cut(s) | 144, 348, 645, 646 |
| BstSFI | CTRYAG | 3 cut(s) | 58, 1624, 1680 |
| BstSLI | GKGCMC | 1 cut(s) | 146 |
| BstUI | CGCG | 2 cut(s) | 771, 1793 |
| BstV1I | GCAGC | 2 cut(s) | 838, 1435 |
| BstV2I | GAAGAC | 2 cut(s) | 1047, 1807 |
| BstX2I | RGATCY | 3 cut(s) | 7, 54, 158 |
| BstYI | RGATCY | 3 cut(s) | 7, 54, 158 |
| Bsu36I | CCTNAGG | 1 cut(s) | 138 |
| BsuI | GTATCC | 1 cut(s) | 485 |
| BsuRI | GGCC | 1 cut(s) | 144 |
| BtgZI | GCGATG | 3 cut(s) | 423, 1299, 1497 |
| BtrI | CACGTC | 1 cut(s) | 1987 |
| BtsCI | GGATG | 6 cut(s) | 69, 220, 549, 957, 1017, 1611 |
| BtsI | GCAGTG | 2 cut(s) | 1356, 1689 |
| BtsIMutI | CAGTG | 3 cut(s) | 1356, 1689, 1997 |
| BtuMI | TCGCGA | 1 cut(s) | 771 |
| BveI | ACCTGC | 1 cut(s) | 916 |
| Cac8I | GCNNGC | 3 cut(s) | 406, 1446, 1913 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1001 |
| CfoI | GCGC | 3 cut(s) | 241, 856, 1534 |
| Cfr13I | GGNCC | 5 cut(s) | 142, 143, 1015, 1233, 2022 |
| Cfr9I | CCCGGG | 1 cut(s) | 646 |
| CseI | GACGC | 2 cut(s) | 256, 1058 |
| Csp6I | GTAC | 5 cut(s) | 576, 1334, 1395, 1485, 1721 |
| CviQI | GTAC | 5 cut(s) | 576, 1334, 1395, 1485, 1721 |
| DdeI | CTNAG | 7 cut(s) | 138, 1092, 1705, 1739, 1872, 2000, 2063 |
| DpnI | GATC | 8 cut(s) | 9, 56, 160, 423, 813, 1058, 1737, 1991 |
| DpnII | GATC | 8 cut(s) | 7, 54, 158, 421, 811, 1056, 1735, 1989 |
| Eam1104I | CTCTTC | 1 cut(s) | 1736 |
| EarI | CTCTTC | 1 cut(s) | 1736 |
| EciI | GGCGGA | 1 cut(s) | 2014 |
| Eco130I | CCWWGG | 1 cut(s) | 368 |
| Eco24I | GRGCYC | 1 cut(s) | 146 |
| Eco47I | GGWCC | 3 cut(s) | 1015, 1233, 2022 |
| Eco57I | CTGAAG | 2 cut(s) | 605, 1804 |
| Eco81I | CCTNAGG | 1 cut(s) | 138 |
| Eco88I | CYCGRG | 3 cut(s) | 646, 837, 1119 |
| EcoO109I | RGGNCCY | 1 cut(s) | 142 |
| EcoT14I | CCWWGG | 1 cut(s) | 368 |
| EcoT22I | ATGCAT | 2 cut(s) | 220, 1868 |
| EcoT38I | GRGCYC | 1 cut(s) | 146 |
| ErhI | CCWWGG | 1 cut(s) | 368 |
| Esp3I | CGTCTC | 1 cut(s) | 1996 |
| FaqI | GGGAC | 4 cut(s) | 241, 663, 1006, 1861 |
| FauI | CCCGC | 3 cut(s) | 948, 983, 2067 |
| FauNDI | CATATG | 1 cut(s) | 1665 |
| FblI | GTMKAC | 1 cut(s) | 1051 |
| Fnu4HI | GCNGC | 3 cut(s) | 402, 852, 1449 |
| FokI | GGATG | 6 cut(s) | 76, 227, 556, 964, 1024, 1598 |
| FriOI | GRGCYC | 1 cut(s) | 146 |
| Fsp4HI | GCNGC | 3 cut(s) | 402, 852, 1449 |
| FspBI | CTAG | 4 cut(s) | 162, 263, 405, 1880 |
| GlaI | GCGC | 3 cut(s) | 240, 855, 1533 |
| GluI | GCNGC | 3 cut(s) | 402, 852, 1449 |
| GsaI | CCCAGC | 1 cut(s) | 1232 |
| GsuI | CTGGAG | 2 cut(s) | 1298, 1852 |
| HaeII | RGCGCY | 1 cut(s) | 242 |
| HaeIII | GGCC | 1 cut(s) | 144 |
| HapII | CCGG | 8 cut(s) | 146, 343, 349, 647, 932, 1034, 1884, 1934 |
| HgaI | GACGC | 2 cut(s) | 256, 1058 |
| HhaI | GCGC | 3 cut(s) | 241, 856, 1534 |
| Hin1I | GRCGYC | 3 cut(s) | 248, 880, 1069 |
| Hin6I | GCGC | 3 cut(s) | 239, 854, 1532 |
| HinP1I | GCGC | 3 cut(s) | 239, 854, 1532 |
| HincII | GTYRAC | 2 cut(s) | 192, 1052 |
| HindII | GTYRAC | 2 cut(s) | 192, 1052 |
| HindIII | AAGCTT | 2 cut(s) | 1921, 2075 |
| HpaII | CCGG | 8 cut(s) | 146, 343, 349, 647, 932, 1034, 1884, 1934 |
| HphI | GGTGA | 7 cut(s) | 1151, 1222, 1270, 1416, 1682, 1770, 2028 |
| Hpy166II | GTNNAC | 2 cut(s) | 192, 1052 |
| Hpy188I | TCNGA | 9 cut(s) | 87, 556, 585, 873, 960, 1003, 1742, 1751, 1823 |
| Hpy188III | TCNNGA | 8 cut(s) | 137, 296, 457, 511, 770, 839, 1756, 1993 |
| Hpy8I | GTNNAC | 2 cut(s) | 192, 1052 |
| Hpy99I | CGWCG | 5 cut(s) | 885, 1049, 1068, 1156, 1798 |
| HpyAV | CCTTC | 9 cut(s) | 115, 229, 490, 580, 652, 802, 823, 1125, 1687 |
| HpyCH4III | ACNGT | 6 cut(s) | 713, 740, 1049, 1081, 1333, 1441 |
| HpyCH4IV | ACGT | 4 cut(s) | 184, 880, 1986, 2014 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 247, 401, 538, 1715 |
| HpyF3I | CTNAG | 7 cut(s) | 138, 1092, 1705, 1739, 1872, 2000, 2063 |
| HpySE526I | ACGT | 4 cut(s) | 184, 880, 1986, 2014 |
| Hsp92I | GRCGYC | 3 cut(s) | 248, 880, 1069 |
| HspAI | GCGC | 3 cut(s) | 239, 854, 1532 |
| Kzo9I | GATC | 8 cut(s) | 7, 54, 158, 421, 811, 1056, 1735, 1989 |
| LmnI | GCTCC | 3 cut(s) | 696, 726, 841 |
| Lsp1109I | GCAGC | 2 cut(s) | 838, 1435 |
| LweI | GCATC | 3 cut(s) | 205, 912, 2042 |
| MaeI | CTAG | 4 cut(s) | 162, 263, 405, 1880 |
| MaeII | ACGT | 4 cut(s) | 184, 880, 1986, 2014 |
| MaeIII | GTNAC | 3 cut(s) | 280, 1572, 1600 |
| MalI | GATC | 8 cut(s) | 9, 56, 160, 423, 813, 1058, 1737, 1991 |
| MboI | GATC | 8 cut(s) | 7, 54, 158, 421, 811, 1056, 1735, 1989 |
| MfeI | CAATTG | 1 cut(s) | 396 |
| MflI | RGATCY | 3 cut(s) | 7, 54, 158 |
| MhlI | GDGCHC | 3 cut(s) | 146, 723, 1446 |
| MlyI | GAGTC | 5 cut(s) | 589, 636, 725, 1103, 1289 |
| MmeI | TCCRAC | 2 cut(s) | 160, 396 |
| Mph1103I | ATGCAT | 2 cut(s) | 220, 1868 |
| MroXI | GAANNNNTTC | 1 cut(s) | 129 |
| MseI | TTAA | 9 cut(s) | 90, 104, 440, 620, 1134, 1164, 1269, 1698, 1850 |
| MslI | CAYNNNNRTG | 6 cut(s) | 336, 442, 756, 1563, 1668, 1985 |
| MspA1I | CMGCKG | 3 cut(s) | 1228, 1276, 2062 |
| MspI | CCGG | 8 cut(s) | 146, 343, 349, 647, 932, 1034, 1884, 1934 |
| MspR9I | CCNGG | 4 cut(s) | 146, 350, 647, 648 |
| MunI | CAATTG | 1 cut(s) | 396 |
| MvnI | CGCG | 2 cut(s) | 771, 1793 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 247, 401, 538, 1715 |
| NciI | CCSGG | 4 cut(s) | 146, 350, 647, 648 |
| NdeI | CATATG | 1 cut(s) | 1665 |
| NdeII | GATC | 8 cut(s) | 7, 54, 158, 421, 811, 1056, 1735, 1989 |
| NheI | GCTAGC | 1 cut(s) | 404 |
| NlaIV | GGNNCC | 5 cut(s) | 144, 347, 930, 1234, 1789 |
| NruI | TCGCGA | 1 cut(s) | 771 |
| NsiI | ATGCAT | 2 cut(s) | 220, 1868 |
| NspI | RCATGY | 1 cut(s) | 638 |
| NspV | TTCGAA | 2 cut(s) | 2010, 2088 |
| PaqCI | CACCTGC | 1 cut(s) | 916 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 877, 2011 |
| PdmI | GAANNNNTTC | 1 cut(s) | 129 |
| PfeI | GAWTC | 9 cut(s) | 460, 551, 766, 1028, 1148, 1752, 1799, 1887, 2007 |
| PflFI | GACNNNGTC | 1 cut(s) | 1068 |
| PkrI | GCNGC | 3 cut(s) | 403, 853, 1450 |
| PleI | GAGTC | 5 cut(s) | 588, 636, 725, 1102, 1288 |
| PpsI | GAGTC | 5 cut(s) | 588, 636, 725, 1102, 1288 |
| PshAI | GACNNNNGTC | 2 cut(s) | 506, 1047 |
| PshBI | ATTAAT | 1 cut(s) | 1134 |
| Psp1406I | AACGTT | 1 cut(s) | 2014 |
| PspFI | CCCAGC | 1 cut(s) | 1228 |
| PspN4I | GGNNCC | 5 cut(s) | 144, 347, 930, 1234, 1789 |
| PspOMI | GGGCCC | 1 cut(s) | 142 |
| PspPI | GGNCC | 5 cut(s) | 142, 143, 1015, 1233, 2022 |
| PstI | CTGCAG | 2 cut(s) | 62, 1684 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1001 |
| PsuI | RGATCY | 3 cut(s) | 7, 54, 158 |
| PsyI | GACNNNGTC | 1 cut(s) | 1068 |
| PvuII | CAGCTG | 1 cut(s) | 1228 |
| RruI | TCGCGA | 1 cut(s) | 771 |
| RsaI | GTAC | 5 cut(s) | 577, 1335, 1396, 1486, 1722 |
| RsaNI | GTAC | 5 cut(s) | 576, 1334, 1395, 1485, 1721 |
| RseI | CAYNNNNRTG | 6 cut(s) | 336, 442, 756, 1563, 1668, 1985 |
| SalI | GTCGAC | 1 cut(s) | 1050 |
| SaqAI | TTAA | 9 cut(s) | 90, 104, 440, 620, 1134, 1164, 1269, 1698, 1850 |
| SatI | GCNGC | 3 cut(s) | 402, 852, 1449 |
| Sau3AI | GATC | 8 cut(s) | 7, 54, 158, 421, 811, 1056, 1735, 1989 |
| Sau96I | GGNCC | 5 cut(s) | 142, 143, 1015, 1233, 2022 |
| ScaI | AGTACT | 1 cut(s) | 1722 |
| SchI | GAGTC | 5 cut(s) | 589, 636, 725, 1103, 1289 |
| ScrFI | CCNGG | 4 cut(s) | 146, 350, 647, 648 |
| SduI | GDGCHC | 3 cut(s) | 146, 723, 1446 |
| SfaNI | GCATC | 3 cut(s) | 205, 912, 2042 |
| SfcI | CTRYAG | 3 cut(s) | 58, 1624, 1680 |
| SfuI | TTCGAA | 2 cut(s) | 2010, 2088 |
| SinI | GGWCC | 3 cut(s) | 1015, 1233, 2022 |
| SmaI | CCCGGG | 1 cut(s) | 648 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 336, 442, 756, 1563, 1668, 1985 |
| SmlI | CTYRAG | 2 cut(s) | 296, 1924 |
| SmoI | CTYRAG | 2 cut(s) | 296, 1924 |
| SspMI | CTAG | 4 cut(s) | 162, 263, 405, 1880 |
| StyD4I | CCNGG | 4 cut(s) | 144, 348, 645, 646 |
| StyI | CCWWGG | 1 cut(s) | 368 |
| TaaI | ACNGT | 6 cut(s) | 713, 740, 1049, 1081, 1333, 1441 |
| TaiI | ACGT | 4 cut(s) | 187, 883, 1989, 2017 |
| TatI | WGTACW | 4 cut(s) | 1333, 1394, 1484, 1720 |
| TauI | GCSGC | 1 cut(s) | 404 |
| TfiI | GAWTC | 9 cut(s) | 460, 551, 766, 1028, 1148, 1752, 1799, 1887, 2007 |
| Tru1I | TTAA | 9 cut(s) | 90, 104, 440, 620, 1134, 1164, 1269, 1698, 1850 |
| Tru9I | TTAA | 9 cut(s) | 90, 104, 440, 620, 1134, 1164, 1269, 1698, 1850 |
| TscAI | CASTG | 3 cut(s) | 1363, 1689, 2004 |
| TseI | GCWGC | 2 cut(s) | 851, 1448 |
| TspDTI | ATGAA | 6 cut(s) | 248, 348, 426, 740, 1846, 1940 |
| TspGWI | ACGGA | 4 cut(s) | 122, 1169, 1225, 1811 |
| TspMI | CCCGGG | 1 cut(s) | 646 |
| TspRI | CASTG | 3 cut(s) | 1363, 1689, 2004 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1068 |
| VpaK11BI | GGWCC | 3 cut(s) | 1015, 1233, 2022 |
| VspI | ATTAAT | 1 cut(s) | 1134 |
| XapI | RAATTY | 3 cut(s) | 862, 1898, 2045 |
| XceI | RCATGY | 1 cut(s) | 638 |
| XmaI | CCCGGG | 1 cut(s) | 646 |
| XmiI | GTMKAC | 1 cut(s) | 1051 |
| XmnI | GAANNNNTTC | 1 cut(s) | 129 |
| XspI | CTAG | 4 cut(s) | 162, 263, 405, 1880 |
| ZraI | GACGTC | 1 cut(s) | 881 |
| ZrmI | AGTACT | 1 cut(s) | 1722 |
| Zsp2I | ATGCAT | 2 cut(s) | 220, 1868 |