Rh1DG065300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000022
Physical Location & Seq
Reverse (-)
11530889 .. 11545587
14699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG065300.1

Sequence Viewer

Length: 2526 bp
ATGGAGGCTCTGTTTAAGAAGTTGAAGGATCTGTGGAGAACTAATGAGAGGTTTACAATGTGCGCGGTGGATGGTTCTGACAGGTTTCTGGTTGGCTTCAATTCGGAATTGGACAGGAAAAAGGTGATGCAGGGATGTCCGTGGACTTTTGATAACGCTTTGGTGGTTTTGGCAGTGACTGATGGGCGTTCTGAGTTGAGGAAGGTCAGTATGGAGGAATCTGCTTTCTGGGTTCGGGTCAGAGGGATCCCTCCTCTGTTTCTTAACAAGGCAATGGGTATGAGAATTGGGAACAGTATTGGATCACATGTCTGGACGGATGAGGGCAGGAATGGGGATTTTTTGGGGGGTTGTTTGAGGATCAGGGTGAGACTTAATCTATCCTCACCACTTCCAAGATGGGTATTAGTGAAGGTGGACGATGGCTTAGCGAGGAAGTTTGAGTTAGAGTATGAAAGATTACCTTTCTTTTGCTTTTATTGTGGATTGTTCTCTCATTTCAGTTCTAGCTGCCCAGCGAAGGCACACCATGAGAAGTTAGAGGTAGGCTATGGGCGGTGGAAAACTGTAATCCGTGATGTGTATAATATCCGGGTGGATGGACAGCTTAAAGGTCATTCTTTTGGACTCCGACGTGAGTCCCAGAATGTGGGCTGGACATGTTCGGCGCCTGAGTTTTCAAACAGTGGGACAGTGAGGGATAGGGAGTTTGCGGGACTAGAGAATTTTCCTGAGATGGAGCAGGATCTACGACCTTGTAAGCGGTACAAGGTGGCGGCCTCACCGGAAAATGGGATGGTGGTGGATGGGGTAGATGCCGATAGTCCGGTGGAAAGGCTAGCGGATTCTGTGGGGTTACTGGAAAGGAAAGAAGATGGGATTGGAAAGGGTGGAGAAGTTCTGGACAGGGTGTTAAATGATGTTTTAATGGAGGAGGAATCTACGGCGTTGGTAGGGGTTGATGGAGATCCGGGCGGATTCAACGAAGGAGGGAATCGCGGGAAGTCTCTGAGTTTGAAAGGGAAAGAGCAATTGGAGGATCTGCTCCTTTTTGATGCCCCTATATTTGGGTTAAAGAAAGGAATCCATGTTCATGATGTTGTGGGGTCGCGCAACGATAGAACTGATGGACATAAGGATACCAAAGTCAAACAAAGAAGCTGTGCTGTGAACAAACAAGGTGGGGTCCAATTGTCTACACCCAAGATTGGGAAGTGTATTGATGAGGGTTCTACTTCTGGTCGAAAGAAAGGCTTTGCTGTTGGTGGGCAGAGAAGAGCAAGGATTGCGAAGTCTTCGGAATCCCCAAGCAAAGTGTCAAAACTTCGAAGTGCATTGGGTGGTCCGCTGGTGGTGTTCGGGGACTTTAATGAAATATTAAAAGTCAGTGAGAAATATGGTGGAGGGGAAAGGTCAGGGGCACAAATTTCCCGGTTTAGAGATGCTATTTCTCAGTGTAACCTAGAGGAGGTGGATTTCGAGGGCCCGGTGTTTACTTGGAGTAATGGCTCAGTGTTAGAACGTATTGATAGAGCTTTTGCTAATGGGTCTGCCTTTGGTTTCTTTAATAGGTTGCATGTGTACCATGTTGATTACGGCCCTTCAGATCATCTTCCAATTTTCATCACTACGAATGGCGAGGAGTTGGGTAAGAGAAGTGGACGCAGAAGGAAGCTTTTTGAGAACTTTTGGGCTAAGGAGGAGGATTGTAGGCATGTGGTGAAGGAGGTTTGGGATGGACATGCAGCTAATAATTATGGGGTGTGCTCCAAGTTAATTAGTTGCATGGCTGGAATGCATGAGTGGAGTATGGCACAAGTGGGCAACGTGCCCAGAAGGATTAAAGAATTAAGGGAGAATTTGGGTGACCTCCCCTTTGATAGCTTGCAGTCAGAGGTACAACAAAAAAGAAAAACTCTTTTGAAAGAGCTTCACAAATTGGAGCGACATGAGGAAGAGATATGGCGGCAGCGTTCCCGGATTAATTGGTTAAATGAAGGAGATAACAATACCAAATTTTTTCACAACTTCGTGAAAAATAGAGGGAGTCGGAACAGGGTGGCTGGTTTGTTTAATATGGAGGATGAATGGGTGAGGGACAGTCATGTGATTAAAGGACTTTTTGTTGGTTTTTTCACTGAACTGTTCACAGCTGGAGGTTGTAATCATCAGGATGTTATTCTTGAAAAGGTGCAGTGTCGGCTCGGTTTCGGTGGTCGGAAACTCTCCACTCTAGCAGAGCAGCAGCCACTGGTGCTCAAGTTCGATAACAGCTCCCTTCTTAAGGGCAACATCACCGTCAATCTATTATGGTTGTTTCTCGGTGAGTGGTGTTTGGCGATGCTGATCCCGGCGGGCAGGGCGATTGGGTGCTCCAAATATGGAGTTTCTTGGGTGGATGGCTGGTCGATAAGGGGATTGGATTTCCTTCCAGATCTGGGTATGGTGGCTACTCTGAAGCTTTGGCTGGGGCACGATGCTGGGCTGATGAGAAGTTTGCCCAACTTTGTTGACGACGGCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

841

Amino Acids

94.39

Weight (kDa)

8.56

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 127 - 172 1.1e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 667
AccB7I CCANNNNNTGG 1 cut(s) 649
AccI GTMKAC 1 cut(s) 1196
AccII CGCG 3 cut(s) 65, 999, 1111
AclWI GGATC 9 cut(s) 36, 241, 254, 310, 368, 753, 962, 1047, 2341
AcsI RAATTY 4 cut(s) 724, 1425, 1858, 2015
AcuI CTGAAG 2 cut(s) 1587, 2477
AcyI GRCGYC 1 cut(s) 668
AfaI GTAC 3 cut(s) 767, 1583, 1899
AfiI CCNNNNNNNGG 9 cut(s) 520, 649, 791, 1067, 1208, 1209, 1468, 2284, 2438
AflII CTTAAG 1 cut(s) 2282
AflIII ACRYGT 2 cut(s) 307, 659
AgsI TTSAA 7 cut(s) 25, 100, 681, 982, 1018, 1924, 2186
AjiI CACGTC 1 cut(s) 635
AjuI GAANNNNNNNTTGG 4 cut(s) 864, 896, 1016, 1048
AloI GAACNNNNNNTCC 2 cut(s) 1074, 1106
Alw21I GWGCWC 3 cut(s) 1769, 2259, 2375
Alw26I GTCTC 2 cut(s) 364, 1011
AlwI GGATC 9 cut(s) 36, 241, 254, 310, 368, 753, 962, 1047, 2341
AlwNI CAGNNNCTG 2 cut(s) 179, 2251
AoxI GGCC 3 cut(s) 777, 1483, 1597
ApaI GGGCCC 1 cut(s) 1487
ApeKI GCWGC 5 cut(s) 510, 1745, 1969, 2242, 2245
ApoI RAATTY 4 cut(s) 724, 1425, 1858, 2015
ArsI GACNNNNNNTTYG 2 cut(s) 1859, 1891
AseI ATTAAT 1 cut(s) 1983
AspLEI GCGC 3 cut(s) 65, 670, 1113
AspS9I GGNCC 5 cut(s) 1186, 1343, 1483, 1484, 1598
AsuC2I CCSGG 6 cut(s) 593, 972, 1432, 1487, 1978, 2351
AsuHPI GGTGA 9 cut(s) 136, 378, 379, 774, 1732, 1877, 2104, 2287, 2336
AsuII TTCGAA 1 cut(s) 1327
AsuNHI GCTAGC 1 cut(s) 838
AvaII GGWCC 2 cut(s) 1186, 1343
BaeGI GKGCMC 4 cut(s) 1423, 1487, 1833, 2475
BaeI ACNNNNGTAYC 2 cut(s) 1131, 1164
BamHI GGATCC 1 cut(s) 246
BanI GGYRCC 1 cut(s) 667
BanII GRGCYC 1 cut(s) 1487
BbsI GAAGAC 1 cut(s) 1287
Bbv12I GWGCWC 3 cut(s) 1769, 2259, 2375
BbvI GCAGC 5 cut(s) 497, 1757, 1981, 2254, 2257
BceAI ACGGC 2 cut(s) 960, 1612
BciVI GTATCC 1 cut(s) 1132
BcnI CCSGG 6 cut(s) 593, 972, 1432, 1487, 1978, 2351
BcoDI GTCTC 2 cut(s) 364, 1011
BfaI CTAG 6 cut(s) 507, 719, 839, 1463, 2234, 2524
BfoI RGCGCY 1 cut(s) 671
BfrI CTTAAG 1 cut(s) 2282
BfuI GTATCC 1 cut(s) 1132
BglII AGATCT 1 cut(s) 2434
BisI GCNGC 7 cut(s) 511, 777, 1746, 1967, 1970, 2243, 2246
BlpI GCTNAGC 1 cut(s) 427
BlsI GCNGC 7 cut(s) 512, 778, 1747, 1968, 1971, 2244, 2247
Bme1390I CCNGG 6 cut(s) 593, 972, 1432, 1487, 1978, 2351
Bme18I GGWCC 2 cut(s) 1186, 1343
BmgBI CACGTC 1 cut(s) 635
BmgT120I GGNCC 5 cut(s) 1186, 1343, 1483, 1484, 1598
BmiI GGNNCC 4 cut(s) 248, 669, 1187, 1485
BmrFI CCNGG 6 cut(s) 593, 972, 1432, 1487, 1978, 2351
BmsI GCATC 6 cut(s) 117, 805, 1045, 1432, 2331, 2467
BmtI GCTAGC 1 cut(s) 842
BoxI GACNNNNGTC 1 cut(s) 637
BpiI GAAGAC 1 cut(s) 1287
BpmI CTGGAG 1 cut(s) 2175
Bpu10I CCTNAGC 1 cut(s) 1695
Bpu1102I GCTNAGC 1 cut(s) 427
Bpu14I TTCGAA 1 cut(s) 1327
BpuEI CTTGAG 1 cut(s) 2243
BpuMI CCSGG 6 cut(s) 593, 972, 1432, 1487, 1978, 2351
BsaBI GATNNNNATC 2 cut(s) 966, 2345
BsaHI GRCGYC 1 cut(s) 668
BsaJI CCNNGG 1 cut(s) 140
BsaWI WCCGGW 2 cut(s) 784, 826
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 9 cut(s) 520, 649, 791, 1067, 1208, 1209, 1468, 2284, 2438
Bse1I ACTGG 2 cut(s) 864, 2256
Bse3DI GCAATG 1 cut(s) 279
Bse8I GATNNNNATC 2 cut(s) 966, 2345
BseDI CCNNGG 1 cut(s) 140
BseJI GATNNNNATC 2 cut(s) 966, 2345
BseLI CCNNNNNNNGG 9 cut(s) 520, 649, 791, 1067, 1208, 1209, 1468, 2284, 2438
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 6 cut(s) 183, 663, 723, 1001, 1466, 1524
BseNI ACTGG 2 cut(s) 864, 2256
BseRI GAGGAG 5 cut(s) 243, 947, 1481, 1655, 1715
BseSI GKGCMC 4 cut(s) 1423, 1487, 1833, 2475
BseXI GCAGC 5 cut(s) 497, 1757, 1981, 2254, 2257
BseYI CCCAGC 3 cut(s) 514, 2467, 2480
BsgI GTGCAG 1 cut(s) 2213
Bsh1236I CGCG 3 cut(s) 65, 999, 1111
BshFI GGCC 3 cut(s) 779, 1485, 1599
BshNI GGYRCC 1 cut(s) 667
BsiHKAI GWGCWC 3 cut(s) 1769, 2259, 2375
BsiSI CCGG 8 cut(s) 592, 785, 827, 971, 1432, 1487, 1978, 2351
BslFI GGGAC 5 cut(s) 625, 703, 729, 1376, 2111
BslI CCNNNNNNNGG 9 cut(s) 520, 649, 791, 1067, 1208, 1209, 1468, 2284, 2438
BsmAI GTCTC 2 cut(s) 364, 1011
BsmFI GGGAC 5 cut(s) 625, 703, 729, 1376, 2111
BsmI GAATGC 1 cut(s) 1800
BsnI GGCC 3 cut(s) 779, 1485, 1599
Bsp119I TTCGAA 1 cut(s) 1327
Bsp120I GGGCCC 1 cut(s) 1483
Bsp1286I GDGCHC 7 cut(s) 1423, 1487, 1769, 1833, 2259, 2375, 2475
Bsp1720I GCTNAGC 1 cut(s) 427
BspANI GGCC 3 cut(s) 779, 1485, 1599
BspCNI CTCAG 6 cut(s) 184, 664, 724, 1002, 1465, 1523
BspFNI CGCG 3 cut(s) 65, 999, 1111
BspHI TCATGA 1 cut(s) 1093
BspLI GGNNCC 4 cut(s) 248, 669, 1187, 1485
BspOI GCTAGC 1 cut(s) 842
BspPI GGATC 9 cut(s) 36, 241, 254, 310, 368, 753, 962, 1047, 2341
BspQI GCTCTTC 1 cut(s) 1270
BspT104I TTCGAA 1 cut(s) 1327
BspT107I GGYRCC 1 cut(s) 667
BspTI CTTAAG 1 cut(s) 2282
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 2 cut(s) 864, 2256
BssECI CCNNGG 1 cut(s) 140
BssNI GRCGYC 1 cut(s) 668
Bst4CI ACNGT 7 cut(s) 296, 568, 686, 694, 2102, 2145, 2299
Bst6I CTCTTC 2 cut(s) 1270, 1950
BstACI GRCGYC 1 cut(s) 668
BstAFI CTTAAG 1 cut(s) 2282
BstAPI GCANNNNNTGC 1 cut(s) 1286
BstBI TTCGAA 1 cut(s) 1327
BstC8I GCNNGC 3 cut(s) 840, 1886, 2356
BstDEI CTNAG 8 cut(s) 192, 427, 672, 732, 1010, 1452, 1510, 1695
BstDSI CCRYGG 1 cut(s) 140
BstEII GGTNACC 1 cut(s) 1865
BstENI CCTNNNNNAGG 2 cut(s) 1466, 2282
BstFNI CGCG 3 cut(s) 65, 999, 1111
BstH2I RGCGCY 1 cut(s) 671
BstHHI GCGC 3 cut(s) 65, 670, 1113
BstMAI GTCTC 2 cut(s) 364, 1011
BstMWI GCNNNNNNNGC 4 cut(s) 1286, 2200, 2254, 2360
BstNSI RCATGY 5 cut(s) 311, 663, 1580, 1718, 1745
BstPAI GACNNNNGTC 1 cut(s) 637
BstPI GGTNACC 1 cut(s) 1865
BstSCI CCNGG 6 cut(s) 591, 970, 1430, 1485, 1976, 2349
BstSLI GKGCMC 4 cut(s) 1423, 1487, 1833, 2475
BstUI CGCG 3 cut(s) 65, 999, 1111
BstV1I GCAGC 5 cut(s) 497, 1757, 1981, 2254, 2257
BstV2I GAAGAC 1 cut(s) 1287
BstX2I RGATCY 6 cut(s) 28, 246, 745, 967, 1039, 2434
BstYI RGATCY 6 cut(s) 28, 246, 745, 967, 1039, 2434
BsuI GTATCC 1 cut(s) 1132
BsuRI GGCC 3 cut(s) 779, 1485, 1599
BtgI CCRYGG 1 cut(s) 140
BtgZI GCGATG 1 cut(s) 2354
BtrI CACGTC 1 cut(s) 635
BtsI GCAGTG 2 cut(s) 180, 2201
BtsIMutI CAGTG 9 cut(s) 180, 691, 699, 1393, 1460, 1518, 2136, 2201, 2249
Cac8I GCNNGC 3 cut(s) 840, 1886, 2356
CaiI CAGNNNCTG 2 cut(s) 179, 2251
CciI TCATGA 1 cut(s) 1093
CfoI GCGC 3 cut(s) 65, 670, 1113
Cfr13I GGNCC 5 cut(s) 1186, 1343, 1483, 1484, 1598
CseI GACGC 1 cut(s) 1671
Csp6I GTAC 3 cut(s) 766, 1582, 1898
CspCI CAANNNNNGTGG 2 cut(s) 1162, 1197
CviQI GTAC 3 cut(s) 766, 1582, 1898
DdeI CTNAG 8 cut(s) 192, 427, 672, 732, 1010, 1452, 1510, 1695
DinI GGCGCC 1 cut(s) 669
Eam1104I CTCTTC 2 cut(s) 1270, 1950
EarI CTCTTC 2 cut(s) 1270, 1950
EciI GGCGGA 1 cut(s) 990
Eco24I GRGCYC 1 cut(s) 1487
Eco47I GGWCC 2 cut(s) 1186, 1343
Eco57I CTGAAG 2 cut(s) 1587, 2477
Eco91I GGTNACC 1 cut(s) 1865
EcoNI CCTNNNNNAGG 2 cut(s) 1466, 2282
EcoO109I RGGNCCY 1 cut(s) 1483
EcoO65I GGTNACC 1 cut(s) 1865
EcoT22I ATGCAT 1 cut(s) 1800
EcoT38I GRGCYC 1 cut(s) 1487
EgeI GGCGCC 1 cut(s) 669
EheI GGCGCC 1 cut(s) 669
FalI AAGNNNNNCTT 4 cut(s) 448, 480, 1238, 1270
FaqI GGGAC 5 cut(s) 625, 703, 729, 1376, 2111
FauI CCCGC 3 cut(s) 706, 992, 2347
FblI GTMKAC 1 cut(s) 1196
Fnu4HI GCNGC 7 cut(s) 511, 777, 1746, 1967, 1970, 2243, 2246
FriOI GRGCYC 1 cut(s) 1487
Fsp4HI GCNGC 7 cut(s) 511, 777, 1746, 1967, 1970, 2243, 2246
FspBI CTAG 6 cut(s) 507, 719, 839, 1463, 2234, 2524
GlaI GCGC 3 cut(s) 64, 669, 1112
GluI GCNGC 7 cut(s) 511, 777, 1746, 1967, 1970, 2243, 2246
GsaI CCCAGC 3 cut(s) 518, 2471, 2484
GsuI CTGGAG 1 cut(s) 2175
HaeII RGCGCY 1 cut(s) 671
HaeIII GGCC 3 cut(s) 779, 1485, 1599
HapII CCGG 8 cut(s) 592, 785, 827, 971, 1432, 1487, 1978, 2351
HgaI GACGC 1 cut(s) 1671
HhaI GCGC 3 cut(s) 65, 670, 1113
Hin1I GRCGYC 1 cut(s) 668
Hin6I GCGC 3 cut(s) 63, 668, 1111
HinP1I GCGC 3 cut(s) 63, 668, 1111
HincII GTYRAC 1 cut(s) 2512
HindII GTYRAC 1 cut(s) 2512
HindIII AAGCTT 2 cut(s) 1673, 2459
HpaII CCGG 8 cut(s) 592, 785, 827, 971, 1432, 1487, 1978, 2351
HphI GGTGA 9 cut(s) 136, 378, 379, 774, 1732, 1877, 2104, 2287, 2336
Hpy188III TCNNGA 8 cut(s) 313, 731, 902, 1094, 2032, 2171, 2183, 2432
Hpy99I CGWCG 2 cut(s) 636, 2519
HpyCH4III ACNGT 7 cut(s) 296, 568, 686, 694, 2102, 2145, 2299
HpyCH4IV ACGT 3 cut(s) 634, 1522, 1827
HpyCH4V TGCA 8 cut(s) 130, 1334, 1576, 1745, 1785, 1798, 1888, 2194
HpyF10VI GCNNNNNNNGC 4 cut(s) 1286, 2200, 2254, 2360
HpyF3I CTNAG 8 cut(s) 192, 427, 672, 732, 1010, 1452, 1510, 1695
HpySE526I ACGT 3 cut(s) 634, 1522, 1827
Hsp92I GRCGYC 1 cut(s) 668
HspAI GCGC 3 cut(s) 63, 668, 1111
KasI GGCGCC 1 cut(s) 667
LguI GCTCTTC 1 cut(s) 1270
LmnI GCTCC 6 cut(s) 739, 1050, 1772, 1942, 2279, 2378
Lsp1109I GCAGC 5 cut(s) 497, 1757, 1981, 2254, 2257
LweI GCATC 6 cut(s) 117, 805, 1045, 1432, 2331, 2467
MaeI CTAG 6 cut(s) 507, 719, 839, 1463, 2234, 2524
MaeII ACGT 3 cut(s) 634, 1522, 1827
MaeIII GTNAC 4 cut(s) 175, 855, 1457, 1865
MboII GAAGA 5 cut(s) 884, 1287, 1287, 1604, 1967
MfeI CAATTG 2 cut(s) 1031, 1190
MflI RGATCY 6 cut(s) 28, 246, 745, 967, 1039, 2434
MhlI GDGCHC 7 cut(s) 1423, 1487, 1769, 1833, 2259, 2375, 2475
Mly113I GGCGCC 1 cut(s) 668
MlyI GAGTC 3 cut(s) 621, 647, 2056
MmeI TCCRAC 3 cut(s) 655, 2030, 2198
Mph1103I ATGCAT 1 cut(s) 1800
MslI CAYNNNNRTG 2 cut(s) 1092, 2172
MspA1I CMGCKG 2 cut(s) 1348, 2153
MspCI CTTAAG 1 cut(s) 2282
MspI CCGG 8 cut(s) 592, 785, 827, 971, 1432, 1487, 1978, 2351
MspR9I CCNGG 6 cut(s) 593, 972, 1432, 1487, 1978, 2351
MunI CAATTG 2 cut(s) 1031, 1190
Mva1269I GAATGC 1 cut(s) 1800
MvnI CGCG 3 cut(s) 65, 999, 1111
MwoI GCNNNNNNNGC 4 cut(s) 1286, 2200, 2254, 2360
NarI GGCGCC 1 cut(s) 668
NciI CCSGG 6 cut(s) 593, 972, 1432, 1487, 1978, 2351
NheI GCTAGC 1 cut(s) 838
NlaIV GGNNCC 4 cut(s) 248, 669, 1187, 1485
NmuCI GTSAC 2 cut(s) 175, 1865
NsiI ATGCAT 1 cut(s) 1800
NspI RCATGY 5 cut(s) 311, 663, 1580, 1718, 1745
NspV TTCGAA 1 cut(s) 1327
PagI TCATGA 1 cut(s) 1093
PciI ACATGT 2 cut(s) 307, 659
PciSI GCTCTTC 1 cut(s) 1270
PctI GAATGC 1 cut(s) 1800
PfeI GAWTC 7 cut(s) 218, 845, 938, 978, 994, 1083, 1301
PflMI CCANNNNNTGG 1 cut(s) 649
PfoI TCCNGGA 1 cut(s) 1976
PkrI GCNGC 7 cut(s) 512, 778, 1747, 1968, 1971, 2244, 2247
PleI GAGTC 3 cut(s) 621, 646, 2055
PluTI GGCGCC 1 cut(s) 671
PpsI GAGTC 3 cut(s) 621, 646, 2055
PscI ACATGT 2 cut(s) 307, 659
PshAI GACNNNNGTC 1 cut(s) 637
PshBI ATTAAT 1 cut(s) 1983
PspEI GGTNACC 1 cut(s) 1865
PspFI CCCAGC 3 cut(s) 514, 2467, 2480
PspN4I GGNNCC 4 cut(s) 248, 669, 1187, 1485
PspOMI GGGCCC 1 cut(s) 1483
PspPI GGNCC 5 cut(s) 1186, 1343, 1483, 1484, 1598
PstNI CAGNNNCTG 2 cut(s) 179, 2251
PsuI RGATCY 6 cut(s) 28, 246, 745, 967, 1039, 2434
PvuII CAGCTG 1 cut(s) 2153
RsaI GTAC 3 cut(s) 767, 1583, 1899
RsaNI GTAC 3 cut(s) 766, 1582, 1898
RseI CAYNNNNRTG 2 cut(s) 1092, 2172
SapI GCTCTTC 1 cut(s) 1270
SatI GCNGC 7 cut(s) 511, 777, 1746, 1967, 1970, 2243, 2246
Sau96I GGNCC 5 cut(s) 1186, 1343, 1483, 1484, 1598
SchI GAGTC 3 cut(s) 621, 647, 2056
ScrFI CCNGG 6 cut(s) 593, 972, 1432, 1487, 1978, 2351
SduI GDGCHC 7 cut(s) 1423, 1487, 1769, 1833, 2259, 2375, 2475
SfaNI GCATC 6 cut(s) 117, 805, 1045, 1432, 2331, 2467
SfoI GGCGCC 1 cut(s) 669
SfuI TTCGAA 1 cut(s) 1327
SinI GGWCC 2 cut(s) 1186, 1343
SmiMI CAYNNNNRTG 2 cut(s) 1092, 2172
SmlI CTYRAG 2 cut(s) 2258, 2282
SmoI CTYRAG 2 cut(s) 2258, 2282
SspDI GGCGCC 1 cut(s) 667
SspI AATATT 1 cut(s) 1377
SspMI CTAG 6 cut(s) 507, 719, 839, 1463, 2234, 2524
StyD4I CCNGG 6 cut(s) 591, 970, 1430, 1485, 1976, 2349
TaaI ACNGT 7 cut(s) 296, 568, 686, 694, 2102, 2145, 2299
TaiI ACGT 3 cut(s) 637, 1525, 1830
TaqI TCGA 5 cut(s) 1243, 1327, 1479, 2265, 2408
TauI GCSGC 2 cut(s) 779, 1969
TfiI GAWTC 7 cut(s) 218, 845, 938, 978, 994, 1083, 1301
TscAI CASTG 9 cut(s) 180, 691, 699, 1393, 1460, 1518, 2143, 2201, 2256
TseFI GTSAC 2 cut(s) 175, 1865
TseI GCWGC 5 cut(s) 510, 1745, 1969, 2242, 2245
Tsp45I GTSAC 2 cut(s) 175, 1865
TspDTI ATGAA 6 cut(s) 468, 1082, 1386, 1612, 2010, 2100
TspGWI ACGGA 3 cut(s) 129, 332, 563
TspRI CASTG 9 cut(s) 180, 691, 699, 1393, 1460, 1518, 2143, 2201, 2256
Van91I CCANNNNNTGG 1 cut(s) 649
Vha464I CTTAAG 1 cut(s) 2282
VpaK11BI GGWCC 2 cut(s) 1186, 1343
VspI ATTAAT 1 cut(s) 1983
XagI CCTNNNNNAGG 2 cut(s) 1466, 2282
XapI RAATTY 4 cut(s) 724, 1425, 1858, 2015
XceI RCATGY 5 cut(s) 311, 663, 1580, 1718, 1745
XcmI CCANNNNNNNNNTGG 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 1196
XspI CTAG 6 cut(s) 507, 719, 839, 1463, 2234, 2524
Zsp2I ATGCAT 1 cut(s) 1800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.