Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 805 |
| AccBSI | CCGCTC | 1 cut(s) | 1060 |
| AcoI | YGGCCR | 1 cut(s) | 7 |
| AcsI | RAATTY | 3 cut(s) | 283, 514, 753 |
| AcuI | CTGAAG | 1 cut(s) | 63 |
| AcyI | GRCGYC | 1 cut(s) | 806 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 83, 639, 788, 1172, 1244, 1245, 1449 |
| AgsI | TTSAA | 9 cut(s) | 68, 154, 195, 514, 680, 1123, 1139, 1308, 1402 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 18 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 566, 598 |
| AluBI | AGCT | 2 cut(s) | 683, 1253 |
| AluI | AGCT | 2 cut(s) | 683, 1253 |
| Alw26I | GTCTC | 7 cut(s) | 308, 340, 347, 468, 890, 925, 1105 |
| AoxI | GGCC | 5 cut(s) | 7, 953, 1174, 1211, 1452 |
| ApaI | GGGCCC | 1 cut(s) | 1456 |
| ApoI | RAATTY | 3 cut(s) | 283, 514, 753 |
| AseI | ATTAAT | 1 cut(s) | 1019 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1334 |
| AspLEI | GCGC | 1 cut(s) | 808 |
| AspS9I | GGNCC | 7 cut(s) | 86, 777, 1175, 1211, 1445, 1452, 1453 |
| AsuC2I | CCSGG | 3 cut(s) | 653, 960, 1215 |
| AsuHPI | GGTGA | 5 cut(s) | 355, 553, 844, 938, 1058 |
| AsuII | TTCGAA | 1 cut(s) | 496 |
| AvaII | GGWCC | 3 cut(s) | 86, 777, 1445 |
| BaeGI | GKGCMC | 1 cut(s) | 1456 |
| BanI | GGYRCC | 1 cut(s) | 805 |
| BanII | GRGCYC | 3 cut(s) | 215, 1442, 1456 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 596, 628 |
| BauI | CACGAG | 1 cut(s) | 1460 |
| BbsI | GAAGAC | 3 cut(s) | 377, 485, 707 |
| BbvCI | CCTCAGC | 1 cut(s) | 981 |
| BceAI | ACGGC | 1 cut(s) | 586 |
| BclI | TGATCA | 1 cut(s) | 708 |
| BcnI | CCSGG | 3 cut(s) | 653, 960, 1215 |
| BcoDI | GTCTC | 7 cut(s) | 308, 340, 347, 468, 890, 925, 1105 |
| BfaI | CTAG | 1 cut(s) | 1389 |
| BfmI | CTRYAG | 2 cut(s) | 772, 1254 |
| BfoI | RGCGCY | 1 cut(s) | 809 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 961 |
| BglII | AGATCT | 1 cut(s) | 363 |
| BisI | GCNGC | 6 cut(s) | 36, 39, 527, 903, 906, 956 |
| BlsI | GCNGC | 6 cut(s) | 37, 40, 528, 904, 907, 957 |
| Bme1390I | CCNGG | 3 cut(s) | 653, 960, 1215 |
| Bme18I | GGWCC | 3 cut(s) | 86, 777, 1445 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 18 |
| BmgT120I | GGNCC | 7 cut(s) | 86, 777, 1175, 1211, 1445, 1452, 1453 |
| BmiI | GGNNCC | 7 cut(s) | 87, 88, 779, 807, 1177, 1441, 1454 |
| BmrFI | CCNGG | 3 cut(s) | 653, 960, 1215 |
| BmsI | GCATC | 1 cut(s) | 1003 |
| BpiI | GAAGAC | 3 cut(s) | 377, 485, 707 |
| BpmI | CTGGAG | 1 cut(s) | 371 |
| Bpu10I | CCTNAGC | 1 cut(s) | 981 |
| Bpu14I | TTCGAA | 1 cut(s) | 496 |
| BpuMI | CCSGG | 3 cut(s) | 653, 960, 1215 |
| BsaHI | GRCGYC | 1 cut(s) | 806 |
| BsaJI | CCNNGG | 4 cut(s) | 240, 278, 959, 1448 |
| BsaWI | WCCGGW | 3 cut(s) | 923, 938, 1442 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 839, 869, 1102, 1132 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 83, 639, 788, 1172, 1244, 1245, 1449 |
| Bse1I | ACTGG | 3 cut(s) | 312, 354, 1318 |
| BseDI | CCNNGG | 4 cut(s) | 240, 278, 959, 1448 |
| BseGI | GGATG | 9 cut(s) | 325, 423, 463, 494, 742, 856, 1018, 1200, 1213 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 83, 639, 788, 1172, 1244, 1245, 1449 |
| BseMII | CTCAG | 3 cut(s) | 228, 326, 972 |
| BseNI | ACTGG | 3 cut(s) | 312, 354, 1318 |
| BseRI | GAGGAG | 1 cut(s) | 860 |
| BseSI | GKGCMC | 1 cut(s) | 1456 |
| BseYI | CCCAGC | 1 cut(s) | 1190 |
| BshFI | GGCC | 5 cut(s) | 9, 955, 1176, 1213, 1454 |
| BshNI | GGYRCC | 1 cut(s) | 805 |
| BsiSI | CCGG | 8 cut(s) | 10, 653, 809, 924, 939, 959, 1214, 1443 |
| BslFI | GGGAC | 5 cut(s) | 99, 1094, 1162, 1264, 1360 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 83, 639, 788, 1172, 1244, 1245, 1449 |
| BsmAI | GTCTC | 7 cut(s) | 308, 340, 347, 468, 890, 925, 1105 |
| BsmBI | CGTCTC | 2 cut(s) | 308, 347 |
| BsmFI | GGGAC | 5 cut(s) | 99, 1094, 1162, 1264, 1360 |
| BsnI | GGCC | 5 cut(s) | 9, 955, 1176, 1213, 1454 |
| Bsp119I | TTCGAA | 1 cut(s) | 496 |
| Bsp120I | GGGCCC | 1 cut(s) | 1452 |
| Bsp1286I | GDGCHC | 3 cut(s) | 215, 1442, 1456 |
| Bsp143I | GATC | 4 cut(s) | 217, 331, 363, 708 |
| BspANI | GGCC | 5 cut(s) | 9, 955, 1176, 1213, 1454 |
| BspCNI | CTCAG | 3 cut(s) | 227, 327, 973 |
| BspLI | GGNNCC | 7 cut(s) | 87, 88, 779, 807, 1177, 1441, 1454 |
| BspQI | GCTCTTC | 1 cut(s) | 1050 |
| BspT104I | TTCGAA | 1 cut(s) | 496 |
| BspT107I | GGYRCC | 1 cut(s) | 805 |
| BsrBI | CCGCTC | 1 cut(s) | 1060 |
| BsrI | ACTGG | 3 cut(s) | 312, 354, 1318 |
| BssECI | CCNNGG | 4 cut(s) | 240, 278, 959, 1448 |
| BssMI | GATC | 4 cut(s) | 217, 331, 363, 708 |
| BssNI | GRCGYC | 1 cut(s) | 806 |
| BssSI | CACGAG | 1 cut(s) | 1460 |
| BssT1I | CCWWGG | 2 cut(s) | 278, 1448 |
| Bst2BI | CACGAG | 1 cut(s) | 1460 |
| Bst4CI | ACNGT | 5 cut(s) | 16, 133, 706, 1116, 1432 |
| Bst6I | CTCTTC | 3 cut(s) | 39, 251, 1050 |
| BstACI | GRCGYC | 1 cut(s) | 806 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 302 |
| BstBI | TTCGAA | 1 cut(s) | 496 |
| BstC8I | GCNNGC | 2 cut(s) | 7, 1062 |
| BstDEI | CTNAG | 3 cut(s) | 214, 335, 981 |
| BstF5I | GGATG | 9 cut(s) | 325, 423, 463, 494, 742, 856, 1018, 1200, 1213 |
| BstH2I | RGCGCY | 1 cut(s) | 809 |
| BstHHI | GCGC | 1 cut(s) | 808 |
| BstKTI | GATC | 4 cut(s) | 220, 334, 366, 711 |
| BstMAI | GTCTC | 7 cut(s) | 308, 340, 347, 468, 890, 925, 1105 |
| BstMBI | GATC | 4 cut(s) | 217, 331, 363, 708 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 302, 618, 914, 961 |
| BstSCI | CCNGG | 3 cut(s) | 651, 958, 1213 |
| BstSFI | CTRYAG | 2 cut(s) | 772, 1254 |
| BstSLI | GKGCMC | 1 cut(s) | 1456 |
| BstV2I | GAAGAC | 3 cut(s) | 377, 485, 707 |
| BstX2I | RGATCY | 1 cut(s) | 363 |
| BstYI | RGATCY | 1 cut(s) | 363 |
| BsuRI | GGCC | 5 cut(s) | 9, 955, 1176, 1213, 1454 |
| BtsCI | GGATG | 9 cut(s) | 325, 423, 463, 494, 742, 856, 1018, 1200, 1213 |
| BtsIMutI | CAGTG | 4 cut(s) | 138, 305, 711, 1121 |
| Cac8I | GCNNGC | 2 cut(s) | 7, 1062 |
| CfoI | GCGC | 1 cut(s) | 808 |
| Cfr13I | GGNCC | 7 cut(s) | 86, 777, 1175, 1211, 1445, 1452, 1453 |
| CseI | GACGC | 1 cut(s) | 8 |
| CviAII | CATG | 3 cut(s) | 446, 645, 1379 |
| DdeI | CTNAG | 3 cut(s) | 214, 335, 981 |
| DinI | GGCGCC | 1 cut(s) | 807 |
| DpnI | GATC | 4 cut(s) | 219, 333, 365, 710 |
| DpnII | GATC | 4 cut(s) | 217, 331, 363, 708 |
| DriI | GACNNNNNGTC | 1 cut(s) | 18 |
| EaeI | YGGCCR | 1 cut(s) | 7 |
| Eam1104I | CTCTTC | 3 cut(s) | 39, 251, 1050 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 18 |
| EarI | CTCTTC | 3 cut(s) | 39, 251, 1050 |
| EciI | GGCGGA | 3 cut(s) | 190, 501, 1016 |
| Eco130I | CCWWGG | 2 cut(s) | 278, 1448 |
| Eco24I | GRGCYC | 3 cut(s) | 215, 1442, 1456 |
| Eco47I | GGWCC | 3 cut(s) | 86, 777, 1445 |
| Eco57I | CTGAAG | 1 cut(s) | 63 |
| EcoO109I | RGGNCCY | 2 cut(s) | 86, 777 |
| EcoT14I | CCWWGG | 2 cut(s) | 278, 1448 |
| EcoT22I | ATGCAT | 2 cut(s) | 298, 1018 |
| EcoT38I | GRGCYC | 3 cut(s) | 215, 1442, 1456 |
| EgeI | GGCGCC | 1 cut(s) | 807 |
| EheI | GGCGCC | 1 cut(s) | 807 |
| ErhI | CCWWGG | 2 cut(s) | 278, 1448 |
| Esp3I | CGTCTC | 2 cut(s) | 308, 347 |
| FaeI | CATG | 3 cut(s) | 449, 648, 1382 |
| FaqI | GGGAC | 5 cut(s) | 99, 1094, 1162, 1264, 1360 |
| FatI | CATG | 3 cut(s) | 445, 644, 1378 |
| FauI | CCCGC | 1 cut(s) | 1053 |
| FbaI | TGATCA | 1 cut(s) | 708 |
| Fnu4HI | GCNGC | 6 cut(s) | 36, 39, 527, 903, 906, 956 |
| FokI | GGATG | 9 cut(s) | 332, 430, 470, 501, 749, 863, 1025, 1207, 1220 |
| FriOI | GRGCYC | 3 cut(s) | 215, 1442, 1456 |
| Fsp4HI | GCNGC | 6 cut(s) | 36, 39, 527, 903, 906, 956 |
| FspBI | CTAG | 1 cut(s) | 1389 |
| GlaI | GCGC | 1 cut(s) | 807 |
| GluI | GCNGC | 6 cut(s) | 36, 39, 527, 903, 906, 956 |
| GsaI | CCCAGC | 1 cut(s) | 1194 |
| GsuI | CTGGAG | 1 cut(s) | 371 |
| HaeII | RGCGCY | 1 cut(s) | 809 |
| HaeIII | GGCC | 5 cut(s) | 9, 955, 1176, 1213, 1454 |
| HapII | CCGG | 8 cut(s) | 10, 653, 809, 924, 939, 959, 1214, 1443 |
| HgaI | GACGC | 1 cut(s) | 8 |
| HhaI | GCGC | 1 cut(s) | 808 |
| Hin1I | GRCGYC | 1 cut(s) | 806 |
| Hin1II | CATG | 3 cut(s) | 449, 648, 1382 |
| Hin6I | GCGC | 1 cut(s) | 806 |
| HinP1I | GCGC | 1 cut(s) | 806 |
| HinfI | GANTC | 5 cut(s) | 68, 498, 860, 1335, 1382 |
| HpaII | CCGG | 8 cut(s) | 10, 653, 809, 924, 939, 959, 1214, 1443 |
| HphI | GGTGA | 5 cut(s) | 355, 553, 844, 938, 1058 |
| Hpy166II | GTNNAC | 2 cut(s) | 136, 630 |
| Hpy188I | TCNGA | 9 cut(s) | 217, 244, 331, 336, 503, 713, 731, 859, 865 |
| Hpy188III | TCNNGA | 3 cut(s) | 77, 154, 1460 |
| Hpy8I | GTNNAC | 2 cut(s) | 136, 630 |
| Hpy99I | CGWCG | 1 cut(s) | 24 |
| HpyAV | CCTTC | 8 cut(s) | 860, 882, 923, 968, 1101, 1195, 1237, 1350 |
| HpyCH4III | ACNGT | 5 cut(s) | 16, 133, 706, 1116, 1432 |
| HpyCH4IV | ACGT | 1 cut(s) | 356 |
| HpyCH4V | TGCA | 5 cut(s) | 268, 296, 305, 748, 1016 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 302, 618, 914, 961 |
| HpyF3I | CTNAG | 3 cut(s) | 214, 335, 981 |
| HpySE526I | ACGT | 1 cut(s) | 356 |
| Hsp92I | GRCGYC | 1 cut(s) | 806 |
| Hsp92II | CATG | 3 cut(s) | 449, 648, 1382 |
| HspAI | GCGC | 1 cut(s) | 806 |
| KasI | GGCGCC | 1 cut(s) | 805 |
| KflI | GGGWCCC | 1 cut(s) | 86 |
| Ksp22I | TGATCA | 1 cut(s) | 708 |
| Kzo9I | GATC | 4 cut(s) | 217, 331, 363, 708 |
| LguI | GCTCTTC | 1 cut(s) | 1050 |
| LmnI | GCTCC | 1 cut(s) | 1445 |
| LweI | GCATC | 1 cut(s) | 1003 |
| MaeI | CTAG | 1 cut(s) | 1389 |
| MaeII | ACGT | 1 cut(s) | 356 |
| MaeIII | GTNAC | 5 cut(s) | 818, 934, 1217, 1321, 1416 |
| MalI | GATC | 4 cut(s) | 219, 333, 365, 710 |
| MbiI | CCGCTC | 1 cut(s) | 1060 |
| MboI | GATC | 4 cut(s) | 217, 331, 363, 708 |
| MboII | GAAGA | 8 cut(s) | 56, 268, 377, 485, 670, 712, 897, 1067 |
| MflI | RGATCY | 1 cut(s) | 363 |
| MhlI | GDGCHC | 3 cut(s) | 215, 1442, 1456 |
| MluCI | AATT | 9 cut(s) | 283, 423, 514, 743, 753, 991, 1020, 1098, 1183 |
| Mly113I | GGCGCC | 1 cut(s) | 806 |
| MlyI | GAGTC | 1 cut(s) | 1376 |
| MmeI | TCCRAC | 1 cut(s) | 228 |
| Mph1103I | ATGCAT | 2 cut(s) | 298, 1018 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1334 |
| MseI | TTAA | 4 cut(s) | 161, 402, 723, 1019 |
| MspI | CCGG | 8 cut(s) | 10, 653, 809, 924, 939, 959, 1214, 1443 |
| MspR9I | CCNGG | 3 cut(s) | 653, 960, 1215 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 302, 618, 914, 961 |
| NarI | GGCGCC | 1 cut(s) | 806 |
| NciI | CCSGG | 3 cut(s) | 653, 960, 1215 |
| NdeII | GATC | 4 cut(s) | 217, 331, 363, 708 |
| NlaIII | CATG | 3 cut(s) | 449, 648, 1382 |
| NlaIV | GGNNCC | 7 cut(s) | 87, 88, 779, 807, 1177, 1441, 1454 |
| NmuCI | GTSAC | 1 cut(s) | 934 |
| NsiI | ATGCAT | 2 cut(s) | 298, 1018 |
| NspV | TTCGAA | 1 cut(s) | 496 |
| PciSI | GCTCTTC | 1 cut(s) | 1050 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1334 |
| PfeI | GAWTC | 4 cut(s) | 68, 498, 860, 1335 |
| PkrI | GCNGC | 6 cut(s) | 37, 40, 528, 904, 907, 957 |
| PleI | GAGTC | 1 cut(s) | 1376 |
| PluTI | GGCGCC | 1 cut(s) | 809 |
| PpsI | GAGTC | 1 cut(s) | 1376 |
| PpuMI | RGGWCCY | 2 cut(s) | 86, 777 |
| PshBI | ATTAAT | 1 cut(s) | 1019 |
| Psp5II | RGGWCCY | 2 cut(s) | 86, 777 |
| PspFI | CCCAGC | 1 cut(s) | 1190 |
| PspN4I | GGNNCC | 7 cut(s) | 87, 88, 779, 807, 1177, 1441, 1454 |
| PspOMI | GGGCCC | 1 cut(s) | 1452 |
| PspPI | GGNCC | 7 cut(s) | 86, 777, 1175, 1211, 1445, 1452, 1453 |
| PspPPI | RGGWCCY | 2 cut(s) | 86, 777 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 99, 131 |
| PsuI | RGATCY | 1 cut(s) | 363 |
| SapI | GCTCTTC | 1 cut(s) | 1050 |
| SaqAI | TTAA | 4 cut(s) | 161, 402, 723, 1019 |
| SatI | GCNGC | 6 cut(s) | 36, 39, 527, 903, 906, 956 |
| Sau3AI | GATC | 4 cut(s) | 217, 331, 363, 708 |
| Sau96I | GGNCC | 7 cut(s) | 86, 777, 1175, 1211, 1445, 1452, 1453 |
| SchI | GAGTC | 1 cut(s) | 1376 |
| ScrFI | CCNGG | 3 cut(s) | 653, 960, 1215 |
| SduI | GDGCHC | 3 cut(s) | 215, 1442, 1456 |
| SfaNI | GCATC | 1 cut(s) | 1003 |
| SfcI | CTRYAG | 2 cut(s) | 772, 1254 |
| SfoI | GGCGCC | 1 cut(s) | 807 |
| SfuI | TTCGAA | 1 cut(s) | 496 |
| SinI | GGWCC | 3 cut(s) | 86, 777, 1445 |
| Sse9I | AATT | 9 cut(s) | 283, 423, 514, 743, 753, 991, 1020, 1098, 1183 |
| SspDI | GGCGCC | 1 cut(s) | 805 |
| SspMI | CTAG | 1 cut(s) | 1389 |
| StyD4I | CCNGG | 3 cut(s) | 651, 958, 1213 |
| StyI | CCWWGG | 2 cut(s) | 278, 1448 |
| TaaI | ACNGT | 5 cut(s) | 16, 133, 706, 1116, 1432 |
| TaiI | ACGT | 1 cut(s) | 359 |
| TaqI | TCGA | 7 cut(s) | 22, 373, 496, 535, 685, 1232, 1354 |
| TasI | AATT | 9 cut(s) | 283, 423, 514, 743, 753, 991, 1020, 1098, 1183 |
| TauI | GCSGC | 6 cut(s) | 38, 41, 529, 905, 908, 958 |
| TfiI | GAWTC | 4 cut(s) | 68, 498, 860, 1335 |
| Tru1I | TTAA | 4 cut(s) | 161, 402, 723, 1019 |
| Tru9I | TTAA | 4 cut(s) | 161, 402, 723, 1019 |
| TscAI | CASTG | 4 cut(s) | 138, 312, 711, 1121 |
| TseFI | GTSAC | 1 cut(s) | 934 |
| Tsp45I | GTSAC | 1 cut(s) | 934 |
| TspDTI | ATGAA | 1 cut(s) | 434 |
| TspGWI | ACGGA | 4 cut(s) | 332, 470, 486, 1397 |
| TspRI | CASTG | 4 cut(s) | 138, 312, 711, 1121 |
| VpaK11BI | GGWCC | 3 cut(s) | 86, 777, 1445 |
| VspI | ATTAAT | 1 cut(s) | 1019 |
| XapI | RAATTY | 3 cut(s) | 283, 514, 753 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1334 |
| XspI | CTAG | 1 cut(s) | 1389 |
| Zsp2I | ATGCAT | 2 cut(s) | 298, 1018 |