ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 289 |
| AccII | CGCG | 2 cut(s) | 41, 311 |
| AciI | CCGC | 6 cut(s) | 41, 289, 395, 440, 541, 721 |
| AclWI | GGATC | 3 cut(s) | 461, 474, 547 |
| AcsI | RAATTY | 1 cut(s) | 480 |
| AcyI | GRCGYC | 1 cut(s) | 248 |
| AdeI | CACNNNGTG | 1 cut(s) | 43 |
| AfaI | GTAC | 1 cut(s) | 673 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 109, 426, 476 |
| AgeI | ACCGGT | 1 cut(s) | 419 |
| AgsI | TTSAA | 3 cut(s) | 16, 589, 651 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 98 |
| AjnI | CCWGG | 2 cut(s) | 145, 562 |
| AluBI | AGCT | 2 cut(s) | 559, 578 |
| AluI | AGCT | 2 cut(s) | 559, 578 |
| Alw21I | GWGCWC | 1 cut(s) | 50 |
| Alw26I | GTCTC | 3 cut(s) | 85, 222, 410 |
| Alw44I | GTGCAC | 1 cut(s) | 46 |
| AlwI | GGATC | 3 cut(s) | 461, 474, 547 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 190 |
| AoxI | GGCC | 1 cut(s) | 387 |
| ApaLI | GTGCAC | 1 cut(s) | 46 |
| ApoI | RAATTY | 1 cut(s) | 480 |
| AsiGI | ACCGGT | 1 cut(s) | 419 |
| AspA2I | CCTAGG | 1 cut(s) | 275 |
| AspS9I | GGNCC | 2 cut(s) | 100, 387 |
| AsuHPI | GGTGA | 1 cut(s) | 100 |
| AvaII | GGWCC | 1 cut(s) | 100 |
| AvrII | CCTAGG | 1 cut(s) | 275 |
| BaeGI | GKGCMC | 1 cut(s) | 50 |
| BamHI | GGATCC | 1 cut(s) | 466 |
| Bbv12I | GWGCWC | 1 cut(s) | 50 |
| BccI | CCATC | 2 cut(s) | 258, 398 |
| BceAI | ACGGC | 1 cut(s) | 343 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 734, 768 |
| BciT130I | CCWGG | 2 cut(s) | 147, 564 |
| BcoDI | GTCTC | 3 cut(s) | 85, 222, 410 |
| BfaI | CTAG | 1 cut(s) | 276 |
| BfmI | CTRYAG | 1 cut(s) | 573 |
| BglII | AGATCT | 1 cut(s) | 337 |
| BlnI | CCTAGG | 1 cut(s) | 275 |
| BmcAI | AGTACT | 1 cut(s) | 673 |
| Bme1390I | CCNGG | 2 cut(s) | 147, 564 |
| Bme18I | GGWCC | 1 cut(s) | 100 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 98 |
| BmgT120I | GGNCC | 2 cut(s) | 100, 387 |
| BmiI | GGNNCC | 2 cut(s) | 273, 468 |
| BmrFI | CCNGG | 2 cut(s) | 147, 564 |
| BmrI | ACTGGG | 1 cut(s) | 86 |
| BmuI | ACTGGG | 1 cut(s) | 86 |
| BpmI | CTGGAG | 1 cut(s) | 707 |
| BpuEI | CTTGAG | 1 cut(s) | 329 |
| BsaBI | GATNNNNATC | 1 cut(s) | 651 |
| BsaHI | GRCGYC | 1 cut(s) | 248 |
| BsaI | GGTCTC | 1 cut(s) | 410 |
| BsaJI | CCNNGG | 4 cut(s) | 63, 146, 275, 297 |
| BsaWI | WCCGGW | 3 cut(s) | 136, 419, 469 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 680, 710 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 109, 426, 476 |
| Bse118I | RCCGGY | 1 cut(s) | 419 |
| Bse1I | ACTGG | 4 cut(s) | 81, 102, 611, 679 |
| Bse8I | GATNNNNATC | 1 cut(s) | 651 |
| BseBI | CCWGG | 2 cut(s) | 147, 564 |
| BseDI | CCNNGG | 4 cut(s) | 63, 146, 275, 297 |
| BseGI | GGATG | 2 cut(s) | 145, 390 |
| BseJI | GATNNNNATC | 1 cut(s) | 651 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 109, 426, 476 |
| BseMII | CTCAG | 4 cut(s) | 99, 276, 527, 749 |
| BseNI | ACTGG | 4 cut(s) | 81, 102, 611, 679 |
| BseRI | GAGGAG | 4 cut(s) | 125, 128, 284, 428 |
| BseSI | GKGCMC | 1 cut(s) | 50 |
| Bsh1236I | CGCG | 2 cut(s) | 41, 311 |
| Bsh1285I | CGRYCG | 1 cut(s) | 424 |
| BshFI | GGCC | 1 cut(s) | 389 |
| BshTI | ACCGGT | 1 cut(s) | 419 |
| BsiEI | CGRYCG | 1 cut(s) | 424 |
| BsiHKAI | GWGCWC | 1 cut(s) | 50 |
| BsiSI | CCGG | 3 cut(s) | 137, 420, 470 |
| BslFI | GGGAC | 2 cut(s) | 241, 505 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 109, 426, 476 |
| BsmAI | GTCTC | 3 cut(s) | 85, 222, 410 |
| BsmBI | CGTCTC | 1 cut(s) | 85 |
| BsmFI | GGGAC | 2 cut(s) | 241, 505 |
| BsmI | GAATGC | 2 cut(s) | 442, 639 |
| BsnI | GGCC | 1 cut(s) | 389 |
| Bso31I | GGTCTC | 1 cut(s) | 410 |
| Bsp1286I | GDGCHC | 1 cut(s) | 50 |
| Bsp143I | GATC | 5 cut(s) | 126, 312, 337, 466, 552 |
| Bsp19I | CCATGG | 2 cut(s) | 63, 297 |
| Bsp68I | TCGCGA | 1 cut(s) | 311 |
| BspACI | CCGC | 6 cut(s) | 41, 289, 395, 440, 541, 721 |
| BspANI | GGCC | 1 cut(s) | 389 |
| BspCNI | CTCAG | 4 cut(s) | 100, 277, 528, 750 |
| BspFNI | CGCG | 2 cut(s) | 41, 311 |
| BspLI | GGNNCC | 2 cut(s) | 273, 468 |
| BspPI | GGATC | 3 cut(s) | 461, 474, 547 |
| BspTNI | GGTCTC | 1 cut(s) | 410 |
| BsrBI | CCGCTC | 1 cut(s) | 289 |
| BsrFI | RCCGGY | 1 cut(s) | 419 |
| BsrI | ACTGG | 4 cut(s) | 81, 102, 611, 679 |
| BssAI | RCCGGY | 1 cut(s) | 419 |
| BssECI | CCNNGG | 4 cut(s) | 63, 146, 275, 297 |
| BssMI | GATC | 5 cut(s) | 126, 312, 337, 466, 552 |
| BssNI | GRCGYC | 1 cut(s) | 248 |
| BssT1I | CCWWGG | 3 cut(s) | 63, 275, 297 |
| Bst2UI | CCWGG | 2 cut(s) | 147, 564 |
| Bst4CI | ACNGT | 1 cut(s) | 629 |
| Bst6I | CTCTTC | 1 cut(s) | 405 |
| BstACI | GRCGYC | 1 cut(s) | 248 |
| BstDEI | CTNAG | 5 cut(s) | 108, 162, 285, 536, 758 |
| BstDSI | CCRYGG | 2 cut(s) | 63, 297 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 107 |
| BstF5I | GGATG | 2 cut(s) | 145, 390 |
| BstFNI | CGCG | 2 cut(s) | 41, 311 |
| BstKTI | GATC | 5 cut(s) | 129, 315, 340, 469, 555 |
| BstMAI | GTCTC | 3 cut(s) | 85, 222, 410 |
| BstMBI | GATC | 5 cut(s) | 126, 312, 337, 466, 552 |
| BstMCI | CGRYCG | 1 cut(s) | 424 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 308, 317, 742 |
| BstNI | CCWGG | 2 cut(s) | 147, 564 |
| BstSCI | CCNGG | 2 cut(s) | 145, 562 |
| BstSFI | CTRYAG | 1 cut(s) | 573 |
| BstSLI | GKGCMC | 1 cut(s) | 50 |
| BstUI | CGCG | 2 cut(s) | 41, 311 |
| BstX2I | RGATCY | 2 cut(s) | 337, 466 |
| BstYI | RGATCY | 2 cut(s) | 337, 466 |
| BsuRI | GGCC | 1 cut(s) | 389 |
| BtgI | CCRYGG | 2 cut(s) | 63, 297 |
| BtsCI | GGATG | 2 cut(s) | 145, 390 |
| BtsIMutI | CAGTG | 2 cut(s) | 533, 618 |
| BtuMI | TCGCGA | 1 cut(s) | 311 |
| CaiI | CAGNNNCTG | 1 cut(s) | 190 |
| Cfr10I | RCCGGY | 1 cut(s) | 419 |
| Cfr13I | GGNCC | 2 cut(s) | 100, 387 |
| CseI | GACGC | 2 cut(s) | 256, 807 |
| Csp6I | GTAC | 1 cut(s) | 672 |
| CspAI | ACCGGT | 1 cut(s) | 419 |
| CviAII | CATG | 5 cut(s) | 64, 298, 406, 644, 679 |
| CviJI | RGCY | 8 cut(s) | 160, 202, 274, 389, 559, 578, 736, 752 |
| CviKI_1 | RGCY | 8 cut(s) | 160, 202, 274, 389, 559, 578, 736, 752 |
| CviQI | GTAC | 1 cut(s) | 672 |
| DdeI | CTNAG | 5 cut(s) | 108, 162, 285, 536, 758 |
| DpnI | GATC | 5 cut(s) | 128, 314, 339, 468, 554 |
| DpnII | GATC | 5 cut(s) | 126, 312, 337, 466, 552 |
| DraIII | CACNNNGTG | 1 cut(s) | 43 |
| DriI | GACNNNNNGTC | 1 cut(s) | 98 |
| Eam1104I | CTCTTC | 1 cut(s) | 405 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 98 |
| EarI | CTCTTC | 1 cut(s) | 405 |
| EciI | GGCGGA | 1 cut(s) | 556 |
| Eco130I | CCWWGG | 3 cut(s) | 63, 275, 297 |
| Eco31I | GGTCTC | 1 cut(s) | 410 |
| Eco47I | GGWCC | 1 cut(s) | 100 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 107 |
| EcoRII | CCWGG | 2 cut(s) | 145, 562 |
| EcoT14I | CCWWGG | 3 cut(s) | 63, 275, 297 |
| ErhI | CCWWGG | 3 cut(s) | 63, 275, 297 |
| Esp3I | CGTCTC | 1 cut(s) | 85 |
| FaeI | CATG | 5 cut(s) | 67, 301, 409, 647, 682 |
| FaqI | GGGAC | 2 cut(s) | 241, 505 |
| FatI | CATG | 5 cut(s) | 63, 297, 405, 643, 678 |
| FauI | CCCGC | 1 cut(s) | 402 |
| FokI | GGATG | 2 cut(s) | 152, 377 |
| FspBI | CTAG | 1 cut(s) | 276 |
| GsuI | CTGGAG | 1 cut(s) | 707 |
| HaeIII | GGCC | 1 cut(s) | 389 |
| HapII | CCGG | 3 cut(s) | 137, 420, 470 |
| HgaI | GACGC | 2 cut(s) | 256, 807 |
| Hin1I | GRCGYC | 1 cut(s) | 248 |
| Hin1II | CATG | 5 cut(s) | 67, 301, 409, 647, 682 |
| HincII | GTYRAC | 1 cut(s) | 475 |
| HindII | GTYRAC | 1 cut(s) | 475 |
| HinfI | GANTC | 3 cut(s) | 215, 647, 682 |
| HpaII | CCGG | 3 cut(s) | 137, 420, 470 |
| HphI | GGTGA | 1 cut(s) | 100 |
| Hpy166II | GTNNAC | 3 cut(s) | 48, 246, 475 |
| Hpy188I | TCNGA | 5 cut(s) | 109, 222, 286, 426, 759 |
| Hpy188III | TCNNGA | 3 cut(s) | 310, 346, 686 |
| Hpy8I | GTNNAC | 3 cut(s) | 48, 246, 475 |
| HpyAV | CCTTC | 4 cut(s) | 496, 718, 760, 785 |
| HpyCH4III | ACNGT | 1 cut(s) | 629 |
| HpyCH4V | TGCA | 2 cut(s) | 48, 548 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 308, 317, 742 |
| HpyF3I | CTNAG | 5 cut(s) | 108, 162, 285, 536, 758 |
| Hsp92I | GRCGYC | 1 cut(s) | 248 |
| Hsp92II | CATG | 5 cut(s) | 67, 301, 409, 647, 682 |
| Kzo9I | GATC | 5 cut(s) | 126, 312, 337, 466, 552 |
| LmnI | GCTCC | 2 cut(s) | 271, 742 |
| MaeI | CTAG | 1 cut(s) | 276 |
| MaeIII | GTNAC | 2 cut(s) | 32, 606 |
| MalI | GATC | 5 cut(s) | 128, 314, 339, 468, 554 |
| MbiI | CCGCTC | 1 cut(s) | 289 |
| MboI | GATC | 5 cut(s) | 126, 312, 337, 466, 552 |
| MboII | GAAGA | 4 cut(s) | 268, 347, 361, 422 |
| MflI | RGATCY | 2 cut(s) | 337, 466 |
| MhlI | GDGCHC | 1 cut(s) | 50 |
| MluCI | AATT | 2 cut(s) | 480, 590 |
| MlyI | GAGTC | 1 cut(s) | 224 |
| MmeI | TCCRAC | 2 cut(s) | 134, 404 |
| MspI | CCGG | 3 cut(s) | 137, 420, 470 |
| MspR9I | CCNGG | 2 cut(s) | 147, 564 |
| Mva1269I | GAATGC | 2 cut(s) | 442, 639 |
| MvaI | CCWGG | 2 cut(s) | 147, 564 |
| MvnI | CGCG | 2 cut(s) | 41, 311 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 308, 317, 742 |
| NcoI | CCATGG | 2 cut(s) | 63, 297 |
| NdeII | GATC | 5 cut(s) | 126, 312, 337, 466, 552 |
| NlaIII | CATG | 5 cut(s) | 67, 301, 409, 647, 682 |
| NlaIV | GGNNCC | 2 cut(s) | 273, 468 |
| NruI | TCGCGA | 1 cut(s) | 311 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 236 |
| PctI | GAATGC | 2 cut(s) | 442, 639 |
| PfeI | GAWTC | 2 cut(s) | 647, 682 |
| PfoI | TCCNGGA | 1 cut(s) | 562 |
| PinAI | ACCGGT | 1 cut(s) | 419 |
| PleI | GAGTC | 1 cut(s) | 223 |
| PpsI | GAGTC | 1 cut(s) | 223 |
| Psp6I | CCWGG | 2 cut(s) | 145, 562 |
| PspGI | CCWGG | 2 cut(s) | 145, 562 |
| PspN4I | GGNNCC | 2 cut(s) | 273, 468 |
| PspPI | GGNCC | 2 cut(s) | 100, 387 |
| PstNI | CAGNNNCTG | 1 cut(s) | 190 |
| PsuI | RGATCY | 2 cut(s) | 337, 466 |
| RruI | TCGCGA | 1 cut(s) | 311 |
| RsaI | GTAC | 1 cut(s) | 673 |
| RsaNI | GTAC | 1 cut(s) | 672 |
| Sau3AI | GATC | 5 cut(s) | 126, 312, 337, 466, 552 |
| Sau96I | GGNCC | 2 cut(s) | 100, 387 |
| ScaI | AGTACT | 1 cut(s) | 673 |
| SchI | GAGTC | 1 cut(s) | 224 |
| ScrFI | CCNGG | 2 cut(s) | 147, 564 |
| SduI | GDGCHC | 1 cut(s) | 50 |
| SetI | ASST | 6 cut(s) | 148, 170, 507, 561, 580, 829 |
| SfcI | CTRYAG | 1 cut(s) | 573 |
| SinI | GGWCC | 1 cut(s) | 100 |
| SmlI | CTYRAG | 1 cut(s) | 344 |
| SmoI | CTYRAG | 1 cut(s) | 344 |
| Sse9I | AATT | 2 cut(s) | 480, 590 |
| SsiI | CCGC | 6 cut(s) | 41, 289, 395, 440, 541, 721 |
| SspMI | CTAG | 1 cut(s) | 276 |
| StyD4I | CCNGG | 2 cut(s) | 145, 562 |
| StyI | CCWWGG | 3 cut(s) | 63, 275, 297 |
| TaaI | ACNGT | 1 cut(s) | 629 |
| TasI | AATT | 2 cut(s) | 480, 590 |
| TatI | WGTACW | 1 cut(s) | 671 |
| TfiI | GAWTC | 2 cut(s) | 647, 682 |
| TscAI | CASTG | 2 cut(s) | 540, 618 |
| TspDTI | ATGAA | 3 cut(s) | 156, 342, 515 |
| TspGWI | ACGGA | 1 cut(s) | 492 |
| TspRI | CASTG | 2 cut(s) | 540, 618 |
| VneI | GTGCAC | 1 cut(s) | 46 |
| VpaK11BI | GGWCC | 1 cut(s) | 100 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 107 |
| XapI | RAATTY | 1 cut(s) | 480 |
| XmaJI | CCTAGG | 1 cut(s) | 275 |
| XspI | CTAG | 1 cut(s) | 276 |
| ZrmI | AGTACT | 1 cut(s) | 673 |