Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Branch | PF02485 | 107 - 336 | 2.9e-81 | Core-2/I-Branching enzyme |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 779 |
| AarI | CACCTGC | 1 cut(s) | 229 |
| Acc36I | ACCTGC | 2 cut(s) | 229, 678 |
| AccB1I | GGYRCC | 1 cut(s) | 954 |
| AccI | GTMKAC | 2 cut(s) | 599, 1087 |
| AciI | CCGC | 2 cut(s) | 152, 165 |
| AclWI | GGATC | 5 cut(s) | 101, 542, 659, 672, 890 |
| AcsI | RAATTY | 5 cut(s) | 279, 374, 498, 809, 1118 |
| AdeI | CACNNNGTG | 2 cut(s) | 344, 568 |
| AfaI | GTAC | 2 cut(s) | 591, 692 |
| AflIII | ACRYGT | 2 cut(s) | 702, 928 |
| AgsI | TTSAA | 5 cut(s) | 79, 186, 302, 545, 886 |
| AjnI | CCWGG | 3 cut(s) | 667, 829, 898 |
| AluBI | AGCT | 2 cut(s) | 364, 645 |
| AluI | AGCT | 2 cut(s) | 364, 645 |
| Alw21I | GWGCWC | 2 cut(s) | 292, 745 |
| Alw26I | GTCTC | 2 cut(s) | 514, 1139 |
| Alw44I | GTGCAC | 2 cut(s) | 288, 741 |
| AlwI | GGATC | 5 cut(s) | 101, 542, 659, 672, 890 |
| Ama87I | CYCGRG | 1 cut(s) | 261 |
| AoxI | GGCC | 3 cut(s) | 83, 670, 1067 |
| ApaLI | GTGCAC | 2 cut(s) | 288, 741 |
| ApeKI | GCWGC | 1 cut(s) | 257 |
| ApoI | RAATTY | 5 cut(s) | 279, 374, 498, 809, 1118 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 499 |
| AspLEI | GCGC | 1 cut(s) | 846 |
| AspS9I | GGNCC | 1 cut(s) | 671 |
| AsuC2I | CCSGG | 3 cut(s) | 262, 263, 815 |
| AsuHPI | GGTGA | 2 cut(s) | 47, 496 |
| AvaI | CYCGRG | 1 cut(s) | 261 |
| BaeGI | GKGCMC | 2 cut(s) | 292, 745 |
| BamHI | GGATCC | 1 cut(s) | 664 |
| BanI | GGYRCC | 1 cut(s) | 954 |
| BanII | GRGCYC | 1 cut(s) | 61 |
| BbsI | GAAGAC | 1 cut(s) | 11 |
| Bbv12I | GWGCWC | 2 cut(s) | 292, 745 |
| BbvI | GCAGC | 1 cut(s) | 269 |
| BccI | CCATC | 4 cut(s) | 72, 785, 1059, 1131 |
| BceAI | ACGGC | 2 cut(s) | 70, 432 |
| BciT130I | CCWGG | 3 cut(s) | 669, 831, 900 |
| BclI | TGATCA | 1 cut(s) | 478 |
| BcnI | CCSGG | 3 cut(s) | 262, 263, 815 |
| BcoDI | GTCTC | 2 cut(s) | 514, 1139 |
| BfuAI | ACCTGC | 2 cut(s) | 229, 678 |
| BisI | GCNGC | 2 cut(s) | 165, 258 |
| BlsI | GCNGC | 2 cut(s) | 166, 259 |
| Bme1390I | CCNGG | 6 cut(s) | 262, 263, 669, 815, 831, 900 |
| BmeT110I | CYCGRG | 1 cut(s) | 261 |
| BmgT120I | GGNCC | 1 cut(s) | 671 |
| BmiI | GGNNCC | 2 cut(s) | 666, 956 |
| BmrFI | CCNGG | 6 cut(s) | 262, 263, 669, 815, 831, 900 |
| BmsI | GCATC | 3 cut(s) | 129, 428, 502 |
| BpiI | GAAGAC | 1 cut(s) | 11 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 277, 309 |
| BpmI | CTGGAG | 1 cut(s) | 210 |
| Bpu10I | CCTNAGC | 1 cut(s) | 975 |
| BpuMI | CCSGG | 3 cut(s) | 262, 263, 815 |
| BsaJI | CCNNGG | 3 cut(s) | 17, 261, 504 |
| Bse1I | ACTGG | 2 cut(s) | 920, 1038 |
| Bse3DI | GCAATG | 1 cut(s) | 852 |
| BseBI | CCWGG | 3 cut(s) | 669, 831, 900 |
| BseDI | CCNNGG | 3 cut(s) | 17, 261, 504 |
| BseGI | GGATG | 1 cut(s) | 1123 |
| BseMI | GCAATG | 1 cut(s) | 852 |
| BseMII | CTCAG | 4 cut(s) | 507, 708, 989, 989 |
| BseNI | ACTGG | 2 cut(s) | 920, 1038 |
| BseSI | GKGCMC | 2 cut(s) | 292, 745 |
| BseXI | GCAGC | 1 cut(s) | 269 |
| BsgI | GTGCAG | 1 cut(s) | 366 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1097 |
| BshFI | GGCC | 3 cut(s) | 85, 672, 1069 |
| BshNI | GGYRCC | 1 cut(s) | 954 |
| BsiEI | CGRYCG | 1 cut(s) | 1097 |
| BsiHKAI | GWGCWC | 2 cut(s) | 292, 745 |
| BsiHKCI | CYCGRG | 1 cut(s) | 261 |
| BsiSI | CCGG | 2 cut(s) | 262, 814 |
| BsmAI | GTCTC | 2 cut(s) | 514, 1139 |
| BsmBI | CGTCTC | 1 cut(s) | 514 |
| BsmI | GAATGC | 1 cut(s) | 323 |
| BsnI | GGCC | 3 cut(s) | 85, 672, 1069 |
| BsoBI | CYCGRG | 1 cut(s) | 261 |
| Bsp1286I | GDGCHC | 3 cut(s) | 61, 292, 745 |
| Bsp143I | GATC | 6 cut(s) | 93, 129, 478, 547, 664, 895 |
| Bsp19I | CCATGG | 1 cut(s) | 504 |
| BspACI | CCGC | 2 cut(s) | 152, 165 |
| BspANI | GGCC | 3 cut(s) | 85, 672, 1069 |
| BspCNI | CTCAG | 4 cut(s) | 508, 707, 988, 990 |
| BspHI | TCATGA | 1 cut(s) | 388 |
| BspLI | GGNNCC | 2 cut(s) | 666, 956 |
| BspMI | ACCTGC | 2 cut(s) | 229, 678 |
| BspPI | GGATC | 5 cut(s) | 101, 542, 659, 672, 890 |
| BspQI | GCTCTTC | 1 cut(s) | 546 |
| BspT107I | GGYRCC | 1 cut(s) | 954 |
| BsrDI | GCAATG | 1 cut(s) | 852 |
| BsrI | ACTGG | 2 cut(s) | 920, 1038 |
| BssECI | CCNNGG | 3 cut(s) | 17, 261, 504 |
| BssMI | GATC | 6 cut(s) | 93, 129, 478, 547, 664, 895 |
| BssNAI | GTATAC | 2 cut(s) | 600, 1088 |
| BssT1I | CCWWGG | 1 cut(s) | 504 |
| Bst1107I | GTATAC | 2 cut(s) | 600, 1088 |
| Bst2UI | CCWGG | 3 cut(s) | 669, 831, 900 |
| Bst4CI | ACNGT | 3 cut(s) | 594, 747, 1098 |
| Bst6I | CTCTTC | 2 cut(s) | 74, 546 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 568 |
| BstC8I | GCNNGC | 4 cut(s) | 61, 417, 771, 827 |
| BstDEI | CTNAG | 4 cut(s) | 516, 694, 975, 998 |
| BstDSI | CCRYGG | 2 cut(s) | 17, 504 |
| BstF5I | GGATG | 1 cut(s) | 1123 |
| BstHHI | GCGC | 1 cut(s) | 846 |
| BstKTI | GATC | 6 cut(s) | 96, 132, 481, 550, 667, 898 |
| BstMAI | GTCTC | 2 cut(s) | 514, 1139 |
| BstMBI | GATC | 6 cut(s) | 93, 129, 478, 547, 664, 895 |
| BstMCI | CGRYCG | 1 cut(s) | 1097 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 568, 1066 |
| BstNI | CCWGG | 3 cut(s) | 669, 831, 900 |
| BstNSI | RCATGY | 5 cut(s) | 419, 706, 773, 874, 932 |
| BstSCI | CCNGG | 6 cut(s) | 260, 261, 667, 813, 829, 898 |
| BstSLI | GKGCMC | 2 cut(s) | 292, 745 |
| BstV1I | GCAGC | 1 cut(s) | 269 |
| BstV2I | GAAGAC | 1 cut(s) | 11 |
| BstX2I | RGATCY | 2 cut(s) | 547, 664 |
| BstYI | RGATCY | 2 cut(s) | 547, 664 |
| BstZ17I | GTATAC | 2 cut(s) | 600, 1088 |
| BsuRI | GGCC | 3 cut(s) | 85, 672, 1069 |
| BtgI | CCRYGG | 2 cut(s) | 17, 504 |
| BtgZI | GCGATG | 1 cut(s) | 50 |
| BtsCI | GGATG | 1 cut(s) | 1123 |
| BtsI | GCAGTG | 2 cut(s) | 354, 481 |
| BtsIMutI | CAGTG | 4 cut(s) | 354, 481, 752, 1045 |
| BveI | ACCTGC | 2 cut(s) | 229, 678 |
| Cac8I | GCNNGC | 4 cut(s) | 61, 417, 771, 827 |
| CciI | TCATGA | 1 cut(s) | 388 |
| CfoI | GCGC | 1 cut(s) | 846 |
| Cfr13I | GGNCC | 1 cut(s) | 671 |
| Cfr9I | CCCGGG | 1 cut(s) | 261 |
| CseI | GACGC | 1 cut(s) | 752 |
| Csp6I | GTAC | 2 cut(s) | 590, 691 |
| CviQI | GTAC | 2 cut(s) | 590, 691 |
| DdeI | CTNAG | 4 cut(s) | 516, 694, 975, 998 |
| DpnI | GATC | 6 cut(s) | 95, 131, 480, 549, 666, 897 |
| DpnII | GATC | 6 cut(s) | 93, 129, 478, 547, 664, 895 |
| DraIII | CACNNNGTG | 2 cut(s) | 344, 568 |
| Eam1104I | CTCTTC | 2 cut(s) | 74, 546 |
| EarI | CTCTTC | 2 cut(s) | 74, 546 |
| Eco130I | CCWWGG | 1 cut(s) | 504 |
| Eco24I | GRGCYC | 1 cut(s) | 61 |
| Eco88I | CYCGRG | 1 cut(s) | 261 |
| EcoRII | CCWGG | 3 cut(s) | 667, 829, 898 |
| EcoT14I | CCWWGG | 1 cut(s) | 504 |
| EcoT22I | ATGCAT | 1 cut(s) | 421 |
| EcoT38I | GRGCYC | 1 cut(s) | 61 |
| ErhI | CCWWGG | 1 cut(s) | 504 |
| Esp3I | CGTCTC | 1 cut(s) | 514 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 713, 745, 1054, 1086 |
| FbaI | TGATCA | 1 cut(s) | 478 |
| FblI | GTMKAC | 2 cut(s) | 599, 1087 |
| Fnu4HI | GCNGC | 2 cut(s) | 165, 258 |
| FokI | GGATG | 1 cut(s) | 1110 |
| FriOI | GRGCYC | 1 cut(s) | 61 |
| Fsp4HI | GCNGC | 2 cut(s) | 165, 258 |
| GlaI | GCGC | 1 cut(s) | 845 |
| GluI | GCNGC | 2 cut(s) | 165, 258 |
| GsuI | CTGGAG | 1 cut(s) | 210 |
| HaeIII | GGCC | 3 cut(s) | 85, 672, 1069 |
| HapII | CCGG | 2 cut(s) | 262, 814 |
| HgaI | GACGC | 1 cut(s) | 752 |
| HhaI | GCGC | 1 cut(s) | 846 |
| Hin6I | GCGC | 1 cut(s) | 844 |
| HinP1I | GCGC | 1 cut(s) | 844 |
| HincII | GTYRAC | 1 cut(s) | 652 |
| HindII | GTYRAC | 1 cut(s) | 652 |
| HinfI | GANTC | 1 cut(s) | 1132 |
| HpaII | CCGG | 2 cut(s) | 262, 814 |
| HphI | GGTGA | 2 cut(s) | 47, 496 |
| Hpy166II | GTNNAC | 6 cut(s) | 290, 590, 600, 652, 743, 1088 |
| Hpy188I | TCNGA | 5 cut(s) | 208, 580, 627, 697, 943 |
| Hpy188III | TCNNGA | 7 cut(s) | 186, 389, 545, 551, 977, 997, 1127 |
| Hpy8I | GTNNAC | 6 cut(s) | 290, 590, 600, 652, 743, 1088 |
| Hpy99I | CGWCG | 1 cut(s) | 1015 |
| HpyCH4III | ACNGT | 3 cut(s) | 594, 747, 1098 |
| HpyCH4IV | ACGT | 2 cut(s) | 602, 1010 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 568, 1066 |
| HpyF3I | CTNAG | 4 cut(s) | 516, 694, 975, 998 |
| HpySE526I | ACGT | 2 cut(s) | 602, 1010 |
| HspAI | GCGC | 1 cut(s) | 844 |
| Ksp22I | TGATCA | 1 cut(s) | 478 |
| Kzo9I | GATC | 6 cut(s) | 93, 129, 478, 547, 664, 895 |
| LguI | GCTCTTC | 1 cut(s) | 546 |
| LmnI | GCTCC | 1 cut(s) | 229 |
| Lsp1109I | GCAGC | 1 cut(s) | 269 |
| LweI | GCATC | 3 cut(s) | 129, 428, 502 |
| MaeII | ACGT | 2 cut(s) | 602, 1010 |
| MaeIII | GTNAC | 8 cut(s) | 35, 170, 449, 705, 922, 986, 1033, 1100 |
| MalI | GATC | 6 cut(s) | 95, 131, 480, 549, 666, 897 |
| MboI | GATC | 6 cut(s) | 93, 129, 478, 547, 664, 895 |
| MboII | GAAGA | 5 cut(s) | 16, 91, 174, 533, 733 |
| MfeI | CAATTG | 1 cut(s) | 847 |
| MflI | RGATCY | 2 cut(s) | 547, 664 |
| MhlI | GDGCHC | 3 cut(s) | 61, 292, 745 |
| MlyI | GAGTC | 1 cut(s) | 1141 |
| MnlI | CCTC | 7 cut(s) | 75, 182, 303, 385, 655, 832, 1044 |
| Mph1103I | ATGCAT | 1 cut(s) | 421 |
| MroXI | GAANNNNTTC | 1 cut(s) | 499 |
| MseI | TTAA | 1 cut(s) | 759 |
| MslI | CAYNNNNRTG | 3 cut(s) | 125, 387, 681 |
| MspI | CCGG | 2 cut(s) | 262, 814 |
| MspR9I | CCNGG | 6 cut(s) | 262, 263, 669, 815, 831, 900 |
| MunI | CAATTG | 1 cut(s) | 847 |
| Mva1269I | GAATGC | 1 cut(s) | 323 |
| MvaI | CCWGG | 3 cut(s) | 669, 831, 900 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 568, 1066 |
| NciI | CCSGG | 3 cut(s) | 262, 263, 815 |
| NcoI | CCATGG | 1 cut(s) | 504 |
| NdeII | GATC | 6 cut(s) | 93, 129, 478, 547, 664, 895 |
| NlaIV | GGNNCC | 2 cut(s) | 666, 956 |
| NmuCI | GTSAC | 1 cut(s) | 35 |
| NsiI | ATGCAT | 1 cut(s) | 421 |
| NspI | RCATGY | 5 cut(s) | 419, 706, 773, 874, 932 |
| PaeI | GCATGC | 2 cut(s) | 419, 773 |
| PagI | TCATGA | 1 cut(s) | 388 |
| PaqCI | CACCTGC | 1 cut(s) | 229 |
| PciI | ACATGT | 2 cut(s) | 702, 928 |
| PciSI | GCTCTTC | 1 cut(s) | 546 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 14 |
| PctI | GAATGC | 1 cut(s) | 323 |
| PdmI | GAANNNNTTC | 1 cut(s) | 499 |
| PfoI | TCCNGGA | 1 cut(s) | 813 |
| PkrI | GCNGC | 2 cut(s) | 166, 259 |
| PleI | GAGTC | 1 cut(s) | 1140 |
| PpsI | GAGTC | 1 cut(s) | 1140 |
| PscI | ACATGT | 2 cut(s) | 702, 928 |
| PsiI | TTATAA | 1 cut(s) | 779 |
| Psp6I | CCWGG | 3 cut(s) | 667, 829, 898 |
| PspGI | CCWGG | 3 cut(s) | 667, 829, 898 |
| PspN4I | GGNNCC | 2 cut(s) | 666, 956 |
| PspPI | GGNCC | 1 cut(s) | 671 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 690, 722 |
| PsuI | RGATCY | 2 cut(s) | 547, 664 |
| RsaI | GTAC | 2 cut(s) | 591, 692 |
| RsaNI | GTAC | 2 cut(s) | 590, 691 |
| RseI | CAYNNNNRTG | 3 cut(s) | 125, 387, 681 |
| SapI | GCTCTTC | 1 cut(s) | 546 |
| SaqAI | TTAA | 1 cut(s) | 759 |
| SatI | GCNGC | 2 cut(s) | 165, 258 |
| Sau3AI | GATC | 6 cut(s) | 93, 129, 478, 547, 664, 895 |
| Sau96I | GGNCC | 1 cut(s) | 671 |
| SchI | GAGTC | 1 cut(s) | 1141 |
| ScrFI | CCNGG | 6 cut(s) | 262, 263, 669, 815, 831, 900 |
| SduI | GDGCHC | 3 cut(s) | 61, 292, 745 |
| SfaNI | GCATC | 3 cut(s) | 129, 428, 502 |
| SmaI | CCCGGG | 1 cut(s) | 263 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 125, 387, 681 |
| SphI | GCATGC | 2 cut(s) | 419, 773 |
| SsiI | CCGC | 2 cut(s) | 152, 165 |
| SspI | AATATT | 1 cut(s) | 1006 |
| StyD4I | CCNGG | 6 cut(s) | 260, 261, 667, 813, 829, 898 |
| StyI | CCWWGG | 1 cut(s) | 504 |
| TaaI | ACNGT | 3 cut(s) | 594, 747, 1098 |
| TaiI | ACGT | 2 cut(s) | 605, 1013 |
| TaqI | TCGA | 2 cut(s) | 894, 1013 |
| TauI | GCSGC | 1 cut(s) | 167 |
| Tru1I | TTAA | 1 cut(s) | 759 |
| Tru9I | TTAA | 1 cut(s) | 759 |
| TscAI | CASTG | 4 cut(s) | 354, 481, 752, 1045 |
| TseFI | GTSAC | 1 cut(s) | 35 |
| TseI | GCWGC | 1 cut(s) | 257 |
| Tsp45I | GTSAC | 1 cut(s) | 35 |
| TspDTI | ATGAA | 7 cut(s) | 17, 316, 371, 428, 644, 876, 1059 |
| TspMI | CCCGGG | 1 cut(s) | 261 |
| TspRI | CASTG | 4 cut(s) | 354, 481, 752, 1045 |
| VneI | GTGCAC | 2 cut(s) | 288, 741 |
| XapI | RAATTY | 5 cut(s) | 279, 374, 498, 809, 1118 |
| XceI | RCATGY | 5 cut(s) | 419, 706, 773, 874, 932 |
| XmaI | CCCGGG | 1 cut(s) | 261 |
| XmiI | GTMKAC | 2 cut(s) | 599, 1087 |
| XmnI | GAANNNNTTC | 1 cut(s) | 499 |
| Zsp2I | ATGCAT | 1 cut(s) | 421 |