Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 163, 403 |
| AccBSI | CCGCTC | 1 cut(s) | 183 |
| AciI | CCGC | 1 cut(s) | 183 |
| AclWI | GGATC | 2 cut(s) | 89, 397 |
| AcoI | YGGCCR | 1 cut(s) | 103 |
| AcuI | CTGAAG | 1 cut(s) | 179 |
| AcyI | GRCGYC | 1 cut(s) | 404 |
| AfaI | GTAC | 1 cut(s) | 439 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 112 |
| AgsI | TTSAA | 3 cut(s) | 275, 418, 433 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 283, 315 |
| Alw21I | GWGCWC | 1 cut(s) | 10 |
| Alw44I | GTGCAC | 1 cut(s) | 6 |
| AlwI | GGATC | 2 cut(s) | 89, 397 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 448 |
| AoxI | GGCC | 2 cut(s) | 103, 370 |
| ApaLI | GTGCAC | 1 cut(s) | 6 |
| AspLEI | GCGC | 1 cut(s) | 406 |
| AsuHPI | GGTGA | 2 cut(s) | 292, 329 |
| BaeGI | GKGCMC | 2 cut(s) | 10, 17 |
| BalI | TGGCCA | 1 cut(s) | 105 |
| BanI | GGYRCC | 2 cut(s) | 163, 403 |
| BbsI | GAAGAC | 1 cut(s) | 71 |
| Bbv12I | GWGCWC | 1 cut(s) | 10 |
| BccI | CCATC | 2 cut(s) | 54, 380 |
| BfaI | CTAG | 1 cut(s) | 462 |
| BfoI | RGCGCY | 1 cut(s) | 407 |
| BmiI | GGNNCC | 2 cut(s) | 165, 405 |
| BmsI | GCATC | 1 cut(s) | 297 |
| BpiI | GAAGAC | 1 cut(s) | 71 |
| BsaHI | GRCGYC | 1 cut(s) | 404 |
| BsaJI | CCNNGG | 1 cut(s) | 231 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 112 |
| BseDI | CCNNGG | 1 cut(s) | 231 |
| BseGI | GGATG | 3 cut(s) | 85, 220, 337 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 112 |
| BseMII | CTCAG | 1 cut(s) | 170 |
| BseSI | GKGCMC | 2 cut(s) | 10, 17 |
| BseYI | CCCAGC | 1 cut(s) | 448 |
| BshFI | GGCC | 2 cut(s) | 105, 372 |
| BshNI | GGYRCC | 2 cut(s) | 163, 403 |
| BsiHKAI | GWGCWC | 1 cut(s) | 10 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 112 |
| BsnI | GGCC | 2 cut(s) | 105, 372 |
| Bsp1286I | GDGCHC | 2 cut(s) | 10, 17 |
| Bsp143I | GATC | 4 cut(s) | 36, 94, 119, 389 |
| BspACI | CCGC | 1 cut(s) | 183 |
| BspANI | GGCC | 2 cut(s) | 105, 372 |
| BspCNI | CTCAG | 1 cut(s) | 171 |
| BspLI | GGNNCC | 2 cut(s) | 165, 405 |
| BspPI | GGATC | 2 cut(s) | 89, 397 |
| BspT107I | GGYRCC | 2 cut(s) | 163, 403 |
| BsrBI | CCGCTC | 1 cut(s) | 183 |
| BssECI | CCNNGG | 1 cut(s) | 231 |
| BssMI | GATC | 4 cut(s) | 36, 94, 119, 389 |
| BssNI | GRCGYC | 1 cut(s) | 404 |
| BssT1I | CCWWGG | 1 cut(s) | 231 |
| Bst4CI | ACNGT | 2 cut(s) | 12, 280 |
| Bst6I | CTCTTC | 1 cut(s) | 198 |
| BstACI | GRCGYC | 1 cut(s) | 404 |
| BstDEI | CTNAG | 1 cut(s) | 179 |
| BstF5I | GGATG | 3 cut(s) | 85, 220, 337 |
| BstH2I | RGCGCY | 1 cut(s) | 407 |
| BstHHI | GCGC | 1 cut(s) | 406 |
| BstKTI | GATC | 4 cut(s) | 39, 97, 122, 392 |
| BstMBI | GATC | 4 cut(s) | 36, 94, 119, 389 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 403 |
| BstSLI | GKGCMC | 2 cut(s) | 10, 17 |
| BstV2I | GAAGAC | 1 cut(s) | 71 |
| BstX2I | RGATCY | 1 cut(s) | 389 |
| BstYI | RGATCY | 1 cut(s) | 389 |
| BsuRI | GGCC | 2 cut(s) | 105, 372 |
| BtsCI | GGATG | 3 cut(s) | 85, 220, 337 |
| BtsIMutI | CAGTG | 1 cut(s) | 17 |
| CaiI | CAGNNNCTG | 1 cut(s) | 448 |
| CfoI | GCGC | 1 cut(s) | 406 |
| CseI | GACGC | 1 cut(s) | 76 |
| Csp6I | GTAC | 1 cut(s) | 438 |
| CviAII | CATG | 2 cut(s) | 101, 150 |
| CviJI | RGCY | 6 cut(s) | 105, 372, 397, 428, 448, 470 |
| CviKI_1 | RGCY | 6 cut(s) | 105, 372, 397, 428, 448, 470 |
| CviQI | GTAC | 1 cut(s) | 438 |
| DdeI | CTNAG | 1 cut(s) | 179 |
| DinI | GGCGCC | 1 cut(s) | 405 |
| DpnI | GATC | 4 cut(s) | 38, 96, 121, 391 |
| DpnII | GATC | 4 cut(s) | 36, 94, 119, 389 |
| EaeI | YGGCCR | 1 cut(s) | 103 |
| Eam1104I | CTCTTC | 1 cut(s) | 198 |
| EarI | CTCTTC | 1 cut(s) | 198 |
| Eco130I | CCWWGG | 1 cut(s) | 231 |
| Eco57I | CTGAAG | 1 cut(s) | 179 |
| EcoT14I | CCWWGG | 1 cut(s) | 231 |
| EgeI | GGCGCC | 1 cut(s) | 405 |
| EheI | GGCGCC | 1 cut(s) | 405 |
| ErhI | CCWWGG | 1 cut(s) | 231 |
| FaeI | CATG | 2 cut(s) | 104, 153 |
| FaiI | YATR | 8 cut(s) | 85, 102, 151, 188, 212, 262, 264, 401 |
| FatI | CATG | 2 cut(s) | 100, 149 |
| FokI | GGATG | 3 cut(s) | 92, 227, 344 |
| FspBI | CTAG | 1 cut(s) | 462 |
| GlaI | GCGC | 1 cut(s) | 405 |
| GsaI | CCCAGC | 1 cut(s) | 452 |
| HaeII | RGCGCY | 1 cut(s) | 407 |
| HaeIII | GGCC | 2 cut(s) | 105, 372 |
| HgaI | GACGC | 1 cut(s) | 76 |
| HhaI | GCGC | 1 cut(s) | 406 |
| Hin1I | GRCGYC | 1 cut(s) | 404 |
| Hin1II | CATG | 2 cut(s) | 104, 153 |
| Hin6I | GCGC | 1 cut(s) | 404 |
| HinP1I | GCGC | 1 cut(s) | 404 |
| HinfI | GANTC | 1 cut(s) | 335 |
| HphI | GGTGA | 2 cut(s) | 292, 329 |
| Hpy166II | GTNNAC | 2 cut(s) | 8, 440 |
| Hpy188I | TCNGA | 1 cut(s) | 180 |
| Hpy8I | GTNNAC | 2 cut(s) | 8, 440 |
| HpyAV | CCTTC | 5 cut(s) | 154, 285, 321, 352, 362 |
| HpyCH4III | ACNGT | 2 cut(s) | 12, 280 |
| HpyCH4V | TGCA | 1 cut(s) | 8 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 403 |
| HpyF3I | CTNAG | 1 cut(s) | 179 |
| Hsp92I | GRCGYC | 1 cut(s) | 404 |
| Hsp92II | CATG | 2 cut(s) | 104, 153 |
| HspAI | GCGC | 1 cut(s) | 404 |
| KasI | GGCGCC | 1 cut(s) | 403 |
| Kzo9I | GATC | 4 cut(s) | 36, 94, 119, 389 |
| LpnPI | CCDG | 8 cut(s) | 30, 98, 180, 240, 300, 378, 428, 434 |
| LweI | GCATC | 1 cut(s) | 297 |
| MaeI | CTAG | 1 cut(s) | 462 |
| MaeIII | GTNAC | 2 cut(s) | 226, 322 |
| MalI | GATC | 4 cut(s) | 38, 96, 121, 391 |
| MbiI | CCGCTC | 1 cut(s) | 183 |
| MboI | GATC | 4 cut(s) | 36, 94, 119, 389 |
| MboII | GAAGA | 4 cut(s) | 46, 69, 76, 215 |
| MflI | RGATCY | 1 cut(s) | 389 |
| MhlI | GDGCHC | 2 cut(s) | 10, 17 |
| MlsI | TGGCCA | 1 cut(s) | 105 |
| MluCI | AATT | 6 cut(s) | 23, 107, 132, 270, 418, 454 |
| MluNI | TGGCCA | 1 cut(s) | 105 |
| Mly113I | GGCGCC | 1 cut(s) | 404 |
| MlyI | GAGTC | 1 cut(s) | 344 |
| MnlI | CCTC | 7 cut(s) | 23, 37, 188, 199, 211, 343, 418 |
| Mox20I | TGGCCA | 1 cut(s) | 105 |
| MscI | TGGCCA | 1 cut(s) | 105 |
| Msp20I | TGGCCA | 1 cut(s) | 105 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 403 |
| NarI | GGCGCC | 1 cut(s) | 404 |
| NdeII | GATC | 4 cut(s) | 36, 94, 119, 389 |
| NlaIII | CATG | 2 cut(s) | 104, 153 |
| NlaIV | GGNNCC | 2 cut(s) | 165, 405 |
| NmuCI | GTSAC | 1 cut(s) | 226 |
| PleI | GAGTC | 1 cut(s) | 343 |
| PluTI | GGCGCC | 1 cut(s) | 407 |
| PpsI | GAGTC | 1 cut(s) | 343 |
| PspFI | CCCAGC | 1 cut(s) | 448 |
| PspN4I | GGNNCC | 2 cut(s) | 165, 405 |
| PstNI | CAGNNNCTG | 1 cut(s) | 448 |
| PsuI | RGATCY | 1 cut(s) | 389 |
| RsaI | GTAC | 1 cut(s) | 439 |
| RsaNI | GTAC | 1 cut(s) | 438 |
| Sau3AI | GATC | 4 cut(s) | 36, 94, 119, 389 |
| SchI | GAGTC | 1 cut(s) | 344 |
| SduI | GDGCHC | 2 cut(s) | 10, 17 |
| SetI | ASST | 5 cut(s) | 53, 210, 233, 296, 354 |
| SfaNI | GCATC | 1 cut(s) | 297 |
| SfoI | GGCGCC | 1 cut(s) | 405 |
| Sse9I | AATT | 6 cut(s) | 23, 107, 132, 270, 418, 454 |
| SsiI | CCGC | 1 cut(s) | 183 |
| SspDI | GGCGCC | 1 cut(s) | 403 |
| SspMI | CTAG | 1 cut(s) | 462 |
| StyI | CCWWGG | 1 cut(s) | 231 |
| TaaI | ACNGT | 2 cut(s) | 12, 280 |
| TaqI | TCGA | 1 cut(s) | 476 |
| TasI | AATT | 6 cut(s) | 23, 107, 132, 270, 418, 454 |
| TatI | WGTACW | 1 cut(s) | 437 |
| TscAI | CASTG | 1 cut(s) | 17 |
| TseFI | GTSAC | 1 cut(s) | 226 |
| Tsp45I | GTSAC | 1 cut(s) | 226 |
| TspDTI | ATGAA | 1 cut(s) | 279 |
| TspRI | CASTG | 1 cut(s) | 17 |
| VneI | GTGCAC | 1 cut(s) | 6 |
| XspI | CTAG | 1 cut(s) | 462 |