Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 38 - 109 | 1.6e-07 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 30 |
| AccI | GTMKAC | 1 cut(s) | 659 |
| AccII | CGCG | 1 cut(s) | 909 |
| AciI | CCGC | 1 cut(s) | 909 |
| AclI | AACGTT | 1 cut(s) | 453 |
| AclWI | GGATC | 4 cut(s) | 74, 335, 476, 804 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 748 |
| AgsI | TTSAA | 5 cut(s) | 160, 247, 643, 701, 953 |
| AjnI | CCWGG | 1 cut(s) | 764 |
| AluBI | AGCT | 4 cut(s) | 222, 869, 1045, 1066 |
| AluI | AGCT | 4 cut(s) | 222, 869, 1045, 1066 |
| Alw21I | GWGCWC | 3 cut(s) | 224, 714, 1026 |
| Alw44I | GTGCAC | 1 cut(s) | 1022 |
| AlwI | GGATC | 4 cut(s) | 74, 335, 476, 804 |
| AoxI | GGCC | 3 cut(s) | 739, 752, 1093 |
| ApaLI | GTGCAC | 1 cut(s) | 1022 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 696 |
| AspLEI | GCGC | 1 cut(s) | 909 |
| AspS9I | GGNCC | 1 cut(s) | 752 |
| AsuC2I | CCSGG | 1 cut(s) | 345 |
| AsuHPI | GGTGA | 1 cut(s) | 569 |
| BaeGI | GKGCMC | 1 cut(s) | 1026 |
| BanI | GGYRCC | 1 cut(s) | 30 |
| BanII | GRGCYC | 1 cut(s) | 224 |
| BbsI | GAAGAC | 1 cut(s) | 229 |
| Bbv12I | GWGCWC | 3 cut(s) | 224, 714, 1026 |
| BccI | CCATC | 4 cut(s) | 248, 323, 548, 698 |
| BciT130I | CCWGG | 1 cut(s) | 766 |
| BclI | TGATCA | 1 cut(s) | 874 |
| BcnI | CCSGG | 1 cut(s) | 345 |
| BfaI | CTAG | 4 cut(s) | 132, 870, 1034, 1071 |
| Bme1390I | CCNGG | 2 cut(s) | 345, 766 |
| BmgT120I | GGNCC | 1 cut(s) | 752 |
| BmiI | GGNNCC | 2 cut(s) | 32, 753 |
| BmrFI | CCNGG | 2 cut(s) | 345, 766 |
| BmsI | GCATC | 1 cut(s) | 487 |
| BpiI | GAAGAC | 1 cut(s) | 229 |
| BpmI | CTGGAG | 2 cut(s) | 687, 787 |
| BpuMI | CCSGG | 1 cut(s) | 345 |
| BsaBI | GATNNNNATC | 1 cut(s) | 258 |
| BsaJI | CCNNGG | 4 cut(s) | 287, 344, 715, 742 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 760, 790 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 748 |
| Bse1I | ACTGG | 1 cut(s) | 670 |
| Bse8I | GATNNNNATC | 1 cut(s) | 258 |
| BseBI | CCWGG | 1 cut(s) | 766 |
| BseDI | CCNNGG | 4 cut(s) | 287, 344, 715, 742 |
| BseGI | GGATG | 3 cut(s) | 82, 722, 1015 |
| BseJI | GATNNNNATC | 1 cut(s) | 258 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 748 |
| BseMII | CTCAG | 1 cut(s) | 90 |
| BseNI | ACTGG | 1 cut(s) | 670 |
| BseRI | GAGGAG | 3 cut(s) | 209, 575, 1076 |
| BseSI | GKGCMC | 1 cut(s) | 1026 |
| Bsh1236I | CGCG | 1 cut(s) | 909 |
| BshFI | GGCC | 3 cut(s) | 741, 754, 1095 |
| BshNI | GGYRCC | 1 cut(s) | 30 |
| BsiHKAI | GWGCWC | 3 cut(s) | 224, 714, 1026 |
| BsiSI | CCGG | 1 cut(s) | 344 |
| BslFI | GGGAC | 1 cut(s) | 945 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 748 |
| BsmFI | GGGAC | 1 cut(s) | 945 |
| BsmI | GAATGC | 1 cut(s) | 1090 |
| BsnI | GGCC | 3 cut(s) | 741, 754, 1095 |
| Bsp1286I | GDGCHC | 3 cut(s) | 224, 714, 1026 |
| Bsp143I | GATC | 5 cut(s) | 79, 340, 468, 796, 874 |
| Bsp19I | CCATGG | 1 cut(s) | 287 |
| BspACI | CCGC | 1 cut(s) | 909 |
| BspANI | GGCC | 3 cut(s) | 741, 754, 1095 |
| BspCNI | CTCAG | 1 cut(s) | 91 |
| BspFNI | CGCG | 1 cut(s) | 909 |
| BspHI | TCATGA | 1 cut(s) | 471 |
| BspLI | GGNNCC | 2 cut(s) | 32, 753 |
| BspPI | GGATC | 4 cut(s) | 74, 335, 476, 804 |
| BspT107I | GGYRCC | 1 cut(s) | 30 |
| BsrI | ACTGG | 1 cut(s) | 670 |
| BssECI | CCNNGG | 4 cut(s) | 287, 344, 715, 742 |
| BssMI | GATC | 5 cut(s) | 79, 340, 468, 796, 874 |
| BssT1I | CCWWGG | 2 cut(s) | 287, 715 |
| Bst2UI | CCWGG | 1 cut(s) | 766 |
| Bst4CI | ACNGT | 1 cut(s) | 73 |
| BstC8I | GCNNGC | 2 cut(s) | 312, 911 |
| BstDEI | CTNAG | 1 cut(s) | 99 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstF5I | GGATG | 3 cut(s) | 82, 722, 1015 |
| BstFNI | CGCG | 1 cut(s) | 909 |
| BstHHI | GCGC | 1 cut(s) | 909 |
| BstKTI | GATC | 5 cut(s) | 82, 343, 471, 799, 877 |
| BstMBI | GATC | 5 cut(s) | 79, 340, 468, 796, 874 |
| BstNI | CCWGG | 1 cut(s) | 766 |
| BstSCI | CCNGG | 2 cut(s) | 343, 764 |
| BstSLI | GKGCMC | 1 cut(s) | 1026 |
| BstUI | CGCG | 1 cut(s) | 909 |
| BstV2I | GAAGAC | 1 cut(s) | 229 |
| BsuRI | GGCC | 3 cut(s) | 741, 754, 1095 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtsCI | GGATG | 3 cut(s) | 82, 722, 1015 |
| BtsIMutI | CAGTG | 1 cut(s) | 78 |
| Cac8I | GCNNGC | 2 cut(s) | 312, 911 |
| CciI | TCATGA | 1 cut(s) | 471 |
| CfoI | GCGC | 1 cut(s) | 909 |
| Cfr13I | GGNCC | 1 cut(s) | 752 |
| CviAII | CATG | 7 cut(s) | 288, 421, 472, 503, 785, 845, 1097 |
| DdeI | CTNAG | 1 cut(s) | 99 |
| DpnI | GATC | 5 cut(s) | 81, 342, 470, 798, 876 |
| DpnII | GATC | 5 cut(s) | 79, 340, 468, 796, 874 |
| Ecl136II | GAGCTC | 1 cut(s) | 222 |
| Eco130I | CCWWGG | 2 cut(s) | 287, 715 |
| Eco24I | GRGCYC | 1 cut(s) | 224 |
| Eco53kI | GAGCTC | 1 cut(s) | 222 |
| EcoICRI | GAGCTC | 1 cut(s) | 222 |
| EcoO109I | RGGNCCY | 1 cut(s) | 752 |
| EcoRII | CCWGG | 1 cut(s) | 764 |
| EcoT14I | CCWWGG | 2 cut(s) | 287, 715 |
| EcoT38I | GRGCYC | 1 cut(s) | 224 |
| ErhI | CCWWGG | 2 cut(s) | 287, 715 |
| FaeI | CATG | 7 cut(s) | 291, 424, 475, 506, 788, 848, 1100 |
| FaqI | GGGAC | 1 cut(s) | 945 |
| FatI | CATG | 7 cut(s) | 287, 420, 471, 502, 784, 844, 1096 |
| FauI | CCCGC | 1 cut(s) | 902 |
| FbaI | TGATCA | 1 cut(s) | 874 |
| FblI | GTMKAC | 1 cut(s) | 659 |
| FokI | GGATG | 3 cut(s) | 89, 709, 1022 |
| FriOI | GRGCYC | 1 cut(s) | 224 |
| FspBI | CTAG | 4 cut(s) | 132, 870, 1034, 1071 |
| GlaI | GCGC | 1 cut(s) | 908 |
| GsuI | CTGGAG | 2 cut(s) | 687, 787 |
| HaeIII | GGCC | 3 cut(s) | 741, 754, 1095 |
| HapII | CCGG | 1 cut(s) | 344 |
| HhaI | GCGC | 1 cut(s) | 909 |
| Hin1II | CATG | 7 cut(s) | 291, 424, 475, 506, 788, 848, 1100 |
| Hin6I | GCGC | 1 cut(s) | 907 |
| HinP1I | GCGC | 1 cut(s) | 907 |
| HincII | GTYRAC | 3 cut(s) | 186, 355, 411 |
| HindII | GTYRAC | 3 cut(s) | 186, 355, 411 |
| HindIII | AAGCTT | 1 cut(s) | 1043 |
| HinfI | GANTC | 5 cut(s) | 152, 259, 264, 499, 586 |
| HpaII | CCGG | 1 cut(s) | 344 |
| HphI | GGTGA | 1 cut(s) | 569 |
| Hpy166II | GTNNAC | 7 cut(s) | 186, 355, 411, 460, 660, 762, 1024 |
| Hpy188I | TCNGA | 5 cut(s) | 226, 253, 269, 483, 580 |
| Hpy188III | TCNNGA | 5 cut(s) | 44, 59, 472, 622, 701 |
| Hpy8I | GTNNAC | 7 cut(s) | 186, 355, 411, 460, 660, 762, 1024 |
| Hpy99I | CGWCG | 1 cut(s) | 53 |
| HpyAV | CCTTC | 6 cut(s) | 253, 408, 420, 667, 742, 947 |
| HpyCH4III | ACNGT | 1 cut(s) | 73 |
| HpyCH4IV | ACGT | 2 cut(s) | 147, 453 |
| HpyCH4V | TGCA | 3 cut(s) | 784, 844, 1024 |
| HpyF3I | CTNAG | 1 cut(s) | 99 |
| HpySE526I | ACGT | 2 cut(s) | 147, 453 |
| Hsp92II | CATG | 7 cut(s) | 291, 424, 475, 506, 788, 848, 1100 |
| HspAI | GCGC | 1 cut(s) | 907 |
| Ksp22I | TGATCA | 1 cut(s) | 874 |
| Kzo9I | GATC | 5 cut(s) | 79, 340, 468, 796, 874 |
| LmnI | GCTCC | 4 cut(s) | 226, 709, 866, 1063 |
| LweI | GCATC | 1 cut(s) | 487 |
| MaeI | CTAG | 4 cut(s) | 132, 870, 1034, 1071 |
| MaeII | ACGT | 2 cut(s) | 147, 453 |
| MaeIII | GTNAC | 3 cut(s) | 17, 514, 1036 |
| MalI | GATC | 5 cut(s) | 81, 342, 470, 798, 876 |
| MboI | GATC | 5 cut(s) | 79, 340, 468, 796, 874 |
| MboII | GAAGA | 4 cut(s) | 187, 229, 745, 934 |
| MhlI | GDGCHC | 3 cut(s) | 224, 714, 1026 |
| MluCI | AATT | 2 cut(s) | 432, 987 |
| MlyI | GAGTC | 1 cut(s) | 258 |
| MmeI | TCCRAC | 2 cut(s) | 774, 844 |
| MroXI | GAANNNNTTC | 1 cut(s) | 696 |
| MseI | TTAA | 4 cut(s) | 144, 609, 966, 1047 |
| MslI | CAYNNNNRTG | 1 cut(s) | 71 |
| MspI | CCGG | 1 cut(s) | 344 |
| MspR9I | CCNGG | 2 cut(s) | 345, 766 |
| Mva1269I | GAATGC | 1 cut(s) | 1090 |
| MvaI | CCWGG | 1 cut(s) | 766 |
| MvnI | CGCG | 1 cut(s) | 909 |
| NciI | CCSGG | 1 cut(s) | 345 |
| NcoI | CCATGG | 1 cut(s) | 287 |
| NdeII | GATC | 5 cut(s) | 79, 340, 468, 796, 874 |
| NlaIII | CATG | 7 cut(s) | 291, 424, 475, 506, 788, 848, 1100 |
| NlaIV | GGNNCC | 2 cut(s) | 32, 753 |
| NmeAIII | GCCGAG | 1 cut(s) | 767 |
| NmuCI | GTSAC | 2 cut(s) | 514, 1036 |
| PagI | TCATGA | 1 cut(s) | 471 |
| PctI | GAATGC | 1 cut(s) | 1090 |
| PdmI | GAANNNNTTC | 1 cut(s) | 696 |
| PfeI | GAWTC | 4 cut(s) | 152, 259, 499, 586 |
| PleI | GAGTC | 1 cut(s) | 258 |
| PpsI | GAGTC | 1 cut(s) | 258 |
| Psp124BI | GAGCTC | 1 cut(s) | 224 |
| Psp1406I | AACGTT | 1 cut(s) | 453 |
| Psp6I | CCWGG | 1 cut(s) | 764 |
| PspGI | CCWGG | 1 cut(s) | 764 |
| PspN4I | GGNNCC | 2 cut(s) | 32, 753 |
| PspPI | GGNCC | 1 cut(s) | 752 |
| RseI | CAYNNNNRTG | 1 cut(s) | 71 |
| SacI | GAGCTC | 1 cut(s) | 224 |
| SaqAI | TTAA | 4 cut(s) | 144, 609, 966, 1047 |
| Sau3AI | GATC | 5 cut(s) | 79, 340, 468, 796, 874 |
| Sau96I | GGNCC | 1 cut(s) | 752 |
| SchI | GAGTC | 1 cut(s) | 258 |
| ScrFI | CCNGG | 2 cut(s) | 345, 766 |
| SduI | GDGCHC | 3 cut(s) | 224, 714, 1026 |
| SfaNI | GCATC | 1 cut(s) | 487 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 71 |
| Sse9I | AATT | 2 cut(s) | 432, 987 |
| SsiI | CCGC | 1 cut(s) | 909 |
| SspI | AATATT | 2 cut(s) | 142, 697 |
| SspMI | CTAG | 4 cut(s) | 132, 870, 1034, 1071 |
| SstI | GAGCTC | 1 cut(s) | 224 |
| StyD4I | CCNGG | 2 cut(s) | 343, 764 |
| StyI | CCWWGG | 2 cut(s) | 287, 715 |
| TaaI | ACNGT | 1 cut(s) | 73 |
| TaiI | ACGT | 2 cut(s) | 150, 456 |
| TaqI | TCGA | 4 cut(s) | 262, 339, 623, 799 |
| TasI | AATT | 2 cut(s) | 432, 987 |
| TfiI | GAWTC | 4 cut(s) | 152, 259, 499, 586 |
| Tru1I | TTAA | 4 cut(s) | 144, 609, 966, 1047 |
| Tru9I | TTAA | 4 cut(s) | 144, 609, 966, 1047 |
| TscAI | CASTG | 1 cut(s) | 78 |
| TseFI | GTSAC | 2 cut(s) | 514, 1036 |
| Tsp45I | GTSAC | 2 cut(s) | 514, 1036 |
| TspDTI | ATGAA | 5 cut(s) | 488, 711, 824, 861, 1026 |
| TspGWI | ACGGA | 1 cut(s) | 178 |
| TspRI | CASTG | 1 cut(s) | 78 |
| VneI | GTGCAC | 1 cut(s) | 1022 |
| XmiI | GTMKAC | 1 cut(s) | 659 |
| XmnI | GAANNNNTTC | 1 cut(s) | 696 |
| XspI | CTAG | 4 cut(s) | 132, 870, 1034, 1071 |