Rmu_sc0002833.1_g000023

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002833.1
OG0000022
Physical Location & Seq
Forward (+)
109643 .. 111668
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002833.1_g000023.1.cds

Sequence Viewer

Length: 1563 bp
atggcaggtagtggcctgccatctctaggtcgtgtgaagctagctgatctcgtaccttctgaaggccttccatcagattcttacaaattatctgtttcaactttgtcacaatcgttggccgcccagtattccgctgccattattcaattatcaagagaattagggtttagccttgttggtgtgaggcgctggtgtcttggtgatagcggactggtcttggtccgtatgaactgggttcccctccttaaatcggtgtggggtattattacaaaaaacttgatagatatggaggagatgctcagtggctttattcgtaaattcgctctcactgagtcggaggcagtggaggtagtcctccctcagaaacgacagaaacagatgccgaggcgtttcttccttgtgggggagttgttgacggataagcaatatcgaatggattctctgatcagtactcttcgtggcttatggatcccagagggggccgatcgcactaggttaacggtgtgtcaattggatggtggtagacgactgcttttctctttcacccttgaatctgaccttacttgggtggtcactagggcgccctggtcgtttgaatgggctctctttgcgttggcggtgatagatggtacggtggacccgttgaaagtttcgttacagacacagtctttttggcttagaattaggggtatccctcccctatacatggatgagtcagccggaagagggattggtaatgcggttaggcagtatgtacgtactggtaaggacaagaatggtagctgcttgggtaagtttctgcgcacccgagtagggattgatatcggaaagcctctgaataaaggtgttactatccctgaagctgcatgggcagggaataagcttttcgacttggaatatgagagattaccacacttttgtctctattgtggtatgatctcacatactggctttagttgtccacgtagagcctcaggggagattccgaagccaacatatgatgtcctccttaatgccgaaaagaaggaggcttggctggctaagatggagagggagagagatgtggctgatgtcacgactgggggcggtgggacgcgttttggactctacccggcgaaggcttctggctggactatgacagcgcttgagtttcctacaattggcttcgttcgttctcgggaggaaagagatggtgttgttgatcagttgtttctggatgaatatgcaatggagattgaggaggaaggtagggttaatgagctatccgacggaccggagatgaagaaacggcggttggttgtgcagcaagagcatacgttaggggatgctttgattgcaaactcgttaattgcgcgatctgatgcaatttctccatcagcagaaatttctccacagaatgtggatctattattattgagagggaagtcatctccacaatcaaagttgttctcggcgatatcggatcagattgacttaattatgcccgcgaatgactcgagtgagtcaagtcctagccagactggggctactggtgagccgggctttgagacacggggggcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

520

Amino Acids

57.48

Weight (kDa)

6.44

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 803
AccB1I GGYRCC 1 cut(s) 580
AccI GTMKAC 1 cut(s) 523
AccII CGCG 3 cut(s) 1096, 1354, 1487
AciI CCGC 8 cut(s) 120, 132, 207, 617, 740, 1086, 1291, 1485
AclWI GGATC 4 cut(s) 463, 476, 1410, 1470
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 2 cut(s) 317, 1383
AcuI CTGAAG 2 cut(s) 81, 879
AcyI GRCGYC 1 cut(s) 581
AfaI GTAC 5 cut(s) 54, 451, 631, 756, 760
AfeI AGCGCT 1 cut(s) 1143
AflIII ACRYGT 1 cut(s) 1094
AgsI TTSAA 5 cut(s) 99, 146, 551, 596, 646
AjnI CCWGG 1 cut(s) 584
AjuI GAANNNNNNNTTGG 2 cut(s) 1277, 1309
AluBI AGCT 6 cut(s) 40, 44, 783, 863, 883, 1261
AluI AGCT 6 cut(s) 40, 44, 783, 863, 883, 1261
Alw26I GTCTC 2 cut(s) 926, 1541
AlwI GGATC 4 cut(s) 463, 476, 1410, 1470
Ama87I CYCGRG 3 cut(s) 807, 1176, 1495
Aor51HI AGCGCT 1 cut(s) 1143
AoxI GGCC 5 cut(s) 13, 64, 117, 480, 1557
ApeKI GCWGC 4 cut(s) 134, 783, 863, 1303
ApoI RAATTY 2 cut(s) 317, 1383
Asp700I GAANNNNTTC 2 cut(s) 66, 436
AspLEI GCGC 5 cut(s) 189, 583, 804, 1144, 1354
AspS9I GGNCC 5 cut(s) 220, 480, 637, 1271, 1557
AsuC2I CCSGG 2 cut(s) 1112, 1539
AsuHPI GGTGA 4 cut(s) 212, 535, 631, 1544
AsuNHI GCTAGC 1 cut(s) 40
AvaI CYCGRG 3 cut(s) 807, 1176, 1495
AvaII GGWCC 3 cut(s) 220, 637, 1271
AxyI CCTNAGG 1 cut(s) 973
BamHI GGATCC 1 cut(s) 468
BanI GGYRCC 1 cut(s) 580
BanII GRGCYC 1 cut(s) 604
BbvI GCAGC 4 cut(s) 121, 770, 850, 1315
BccI CCATC 7 cut(s) 28, 79, 509, 620, 1039, 1184, 1381
BceAI ACGGC 1 cut(s) 1304
BciT130I CCWGG 1 cut(s) 586
BciVI GTATCC 1 cut(s) 701
BclI TGATCA 2 cut(s) 444, 1201
BcnI CCSGG 2 cut(s) 1112, 1539
BcoDI GTCTC 2 cut(s) 926, 1541
BfaI CTAG 5 cut(s) 26, 41, 492, 576, 1512
BfoI RGCGCY 3 cut(s) 190, 584, 1145
BfuI GTATCC 1 cut(s) 701
BisI GCNGC 5 cut(s) 120, 135, 784, 864, 1304
BlsI GCNGC 5 cut(s) 121, 136, 785, 865, 1305
BmcAI AGTACT 1 cut(s) 451
Bme1390I CCNGG 3 cut(s) 586, 1112, 1539
Bme18I GGWCC 3 cut(s) 220, 637, 1271
BmeT110I CYCGRG 3 cut(s) 807, 1176, 1495
BmgT120I GGNCC 5 cut(s) 220, 480, 637, 1271, 1557
BmiI GGNNCC 6 cut(s) 237, 470, 481, 582, 639, 1558
BmrFI CCNGG 3 cut(s) 586, 1112, 1539
BmrI ACTGGG 4 cut(s) 118, 241, 1089, 1530
BmsI GCATC 4 cut(s) 285, 369, 1315, 1351
BmtI GCTAGC 1 cut(s) 44
BmuI ACTGGG 4 cut(s) 118, 241, 1089, 1530
BpuEI CTTGAG 1 cut(s) 1166
BpuMI CCSGG 2 cut(s) 1112, 1539
BsaAI YACGTR 2 cut(s) 758, 965
BsaBI GATNNNNATC 1 cut(s) 821
BsaHI GRCGYC 1 cut(s) 581
BsaJI CCNNGG 2 cut(s) 383, 584
BsaWI WCCGGW 1 cut(s) 1273
Bse1I ACTGG 8 cut(s) 124, 216, 236, 766, 952, 1084, 1525, 1534
Bse21I CCTNAGG 1 cut(s) 973
Bse3DI GCAATG 1 cut(s) 1233
Bse8I GATNNNNATC 1 cut(s) 821
BseBI CCWGG 1 cut(s) 586
BseDI CCNNGG 2 cut(s) 383, 584
BseGI GGATG 4 cut(s) 520, 715, 1222, 1330
BseJI GATNNNNATC 1 cut(s) 821
BseMI GCAATG 1 cut(s) 1233
BseMII CTCAG 4 cut(s) 313, 321, 374, 987
BseNI ACTGG 8 cut(s) 124, 216, 236, 766, 952, 1084, 1525, 1534
BseRI GAGGAG 2 cut(s) 305, 1253
BseXI GCAGC 4 cut(s) 121, 770, 850, 1315
BsgI GTGCAG 1 cut(s) 1322
Bsh1236I CGCG 3 cut(s) 1096, 1354, 1487
Bsh1285I CGRYCG 1 cut(s) 487
BshFI GGCC 5 cut(s) 15, 66, 119, 482, 1559
BshNI GGYRCC 1 cut(s) 580
BsiEI CGRYCG 1 cut(s) 487
BsiHKCI CYCGRG 3 cut(s) 807, 1176, 1495
BsiSI CCGG 4 cut(s) 720, 1112, 1274, 1538
BslFI GGGAC 1 cut(s) 1105
BsmAI GTCTC 2 cut(s) 926, 1541
BsmFI GGGAC 1 cut(s) 1105
BsnI GGCC 5 cut(s) 15, 66, 119, 482, 1559
BsoBI CYCGRG 3 cut(s) 807, 1176, 1495
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 9 cut(s) 46, 444, 468, 484, 936, 1201, 1355, 1402, 1462
BspACI CCGC 8 cut(s) 120, 132, 207, 617, 740, 1086, 1291, 1485
BspANI GGCC 5 cut(s) 15, 66, 119, 482, 1559
BspCNI CTCAG 4 cut(s) 312, 322, 373, 986
BspFNI CGCG 3 cut(s) 1096, 1354, 1487
BspLI GGNNCC 6 cut(s) 237, 470, 481, 582, 639, 1558
BspOI GCTAGC 1 cut(s) 44
BspPI GGATC 4 cut(s) 463, 476, 1410, 1470
BspT107I GGYRCC 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 1233
BsrI ACTGG 8 cut(s) 124, 216, 236, 766, 952, 1084, 1525, 1534
BssECI CCNNGG 2 cut(s) 383, 584
BssMI GATC 9 cut(s) 46, 444, 468, 484, 936, 1201, 1355, 1402, 1462
BssNI GRCGYC 1 cut(s) 581
Bst2UI CCWGG 1 cut(s) 586
Bst4CI ACNGT 3 cut(s) 502, 634, 666
Bst6I CTCTTC 2 cut(s) 459, 718
BstACI GRCGYC 1 cut(s) 581
BstBAI YACGTR 2 cut(s) 758, 965
BstC8I GCNNGC 4 cut(s) 17, 42, 1038, 1485
BstDEI CTNAG 6 cut(s) 299, 330, 360, 677, 973, 1041
BstENI CCTNNNNNAGG 1 cut(s) 60
BstF5I GGATG 4 cut(s) 520, 715, 1222, 1330
BstFNI CGCG 3 cut(s) 1096, 1354, 1487
BstH2I RGCGCY 3 cut(s) 190, 584, 1145
BstHHI GCGC 5 cut(s) 189, 583, 804, 1144, 1354
BstKTI GATC 9 cut(s) 49, 447, 471, 487, 939, 1204, 1358, 1405, 1465
BstMAI GTCTC 2 cut(s) 926, 1541
BstMBI GATC 9 cut(s) 46, 444, 468, 484, 936, 1201, 1355, 1402, 1462
BstMCI CGRYCG 1 cut(s) 487
BstMWI GCNNNNNNNGC 5 cut(s) 608, 869, 1037, 1309, 1334
BstNI CCWGG 1 cut(s) 586
BstSCI CCNGG 3 cut(s) 584, 1110, 1537
BstSNI TACGTA 1 cut(s) 758
BstUI CGCG 3 cut(s) 1096, 1354, 1487
BstV1I GCAGC 4 cut(s) 121, 770, 850, 1315
BstX2I RGATCY 2 cut(s) 468, 1402
BstYI RGATCY 2 cut(s) 468, 1402
Bsu36I CCTNAGG 1 cut(s) 973
BsuI GTATCC 1 cut(s) 701
BsuRI GGCC 5 cut(s) 15, 66, 119, 482, 1559
BtsCI GGATG 4 cut(s) 520, 715, 1222, 1330
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 3 cut(s) 307, 327, 348
Cac8I GCNNGC 4 cut(s) 17, 42, 1038, 1485
CfoI GCGC 5 cut(s) 189, 583, 804, 1144, 1354
Cfr13I GGNCC 5 cut(s) 220, 480, 637, 1271, 1557
CpoI CGGWCCG 1 cut(s) 1271
CseI GACGC 1 cut(s) 1102
Csp6I GTAC 5 cut(s) 53, 450, 630, 755, 759
CspI CGGWCCG 1 cut(s) 1271
CviAII CATG 2 cut(s) 706, 867
CviQI GTAC 5 cut(s) 53, 450, 630, 755, 759
DdeI CTNAG 6 cut(s) 299, 330, 360, 677, 973, 1041
DinI GGCGCC 1 cut(s) 582
DpnI GATC 9 cut(s) 48, 446, 470, 486, 938, 1203, 1357, 1404, 1464
DpnII GATC 9 cut(s) 46, 444, 468, 484, 936, 1201, 1355, 1402, 1462
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 459, 718
EarI CTCTTC 2 cut(s) 459, 718
Eco105I TACGTA 1 cut(s) 758
Eco147I AGGCCT 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 604
Eco32I GATATC 2 cut(s) 823, 1458
Eco47I GGWCC 3 cut(s) 220, 637, 1271
Eco47III AGCGCT 1 cut(s) 1143
Eco57I CTGAAG 2 cut(s) 81, 879
Eco81I CCTNAGG 1 cut(s) 973
Eco88I CYCGRG 3 cut(s) 807, 1176, 1495
EcoNI CCTNNNNNAGG 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 1557
EcoRII CCWGG 1 cut(s) 584
EcoRV GATATC 2 cut(s) 823, 1458
EcoT38I GRGCYC 1 cut(s) 604
EgeI GGCGCC 1 cut(s) 582
EheI GGCGCC 1 cut(s) 582
FaeI CATG 2 cut(s) 709, 870
FaqI GGGAC 1 cut(s) 1105
FatI CATG 2 cut(s) 705, 866
FauI CCCGC 1 cut(s) 1492
FauNDI CATATG 1 cut(s) 997
FbaI TGATCA 2 cut(s) 444, 1201
FblI GTMKAC 1 cut(s) 523
Fnu4HI GCNGC 5 cut(s) 120, 135, 784, 864, 1304
FokI GGATG 4 cut(s) 527, 722, 1229, 1337
FriOI GRGCYC 1 cut(s) 604
Fsp4HI GCNGC 5 cut(s) 120, 135, 784, 864, 1304
FspBI CTAG 5 cut(s) 26, 41, 492, 576, 1512
FspI TGCGCA 1 cut(s) 803
GlaI GCGC 5 cut(s) 188, 582, 803, 1143, 1353
GluI GCNGC 5 cut(s) 120, 135, 784, 864, 1304
HaeII RGCGCY 3 cut(s) 190, 584, 1145
HaeIII GGCC 5 cut(s) 15, 66, 119, 482, 1559
HapII CCGG 4 cut(s) 720, 1112, 1274, 1538
HgaI GACGC 1 cut(s) 1102
HhaI GCGC 5 cut(s) 189, 583, 804, 1144, 1354
Hin1I GRCGYC 1 cut(s) 581
Hin1II CATG 2 cut(s) 709, 870
Hin6I GCGC 5 cut(s) 187, 581, 802, 1142, 1352
HinP1I GCGC 5 cut(s) 187, 581, 802, 1142, 1352
HincII GTYRAC 2 cut(s) 414, 498
HindII GTYRAC 2 cut(s) 414, 498
HindIII AAGCTT 1 cut(s) 881
HinfI GANTC 9 cut(s) 77, 332, 437, 551, 713, 982, 1104, 1493, 1502
HpaI GTTAAC 1 cut(s) 498
HpaII CCGG 4 cut(s) 720, 1112, 1274, 1538
HphI GGTGA 4 cut(s) 212, 535, 631, 1544
Hpy166II GTNNAC 5 cut(s) 414, 498, 524, 637, 962
Hpy188III TCNNGA 4 cut(s) 153, 1075, 1178, 1214
Hpy8I GTNNAC 5 cut(s) 414, 498, 524, 637, 962
Hpy99I CGWCG 1 cut(s) 1271
HpyAV CCTTC 6 cut(s) 56, 66, 77, 1018, 1111, 1238
HpyCH4III ACNGT 3 cut(s) 502, 634, 666
HpyCH4IV ACGT 3 cut(s) 757, 964, 1316
HpyCH4V TGCA 5 cut(s) 866, 1226, 1303, 1337, 1364
HpyF10VI GCNNNNNNNGC 5 cut(s) 608, 869, 1037, 1309, 1334
HpyF3I CTNAG 6 cut(s) 299, 330, 360, 677, 973, 1041
HpySE526I ACGT 3 cut(s) 757, 964, 1316
Hsp92I GRCGYC 1 cut(s) 581
Hsp92II CATG 2 cut(s) 709, 870
HspAI GCGC 5 cut(s) 187, 581, 802, 1142, 1352
KasI GGCGCC 1 cut(s) 580
Ksp22I TGATCA 2 cut(s) 444, 1201
KspAI GTTAAC 1 cut(s) 498
Kzo9I GATC 9 cut(s) 46, 444, 468, 484, 936, 1201, 1355, 1402, 1462
Lsp1109I GCAGC 4 cut(s) 121, 770, 850, 1315
LweI GCATC 4 cut(s) 285, 369, 1315, 1351
MaeI CTAG 5 cut(s) 26, 41, 492, 576, 1512
MaeII ACGT 3 cut(s) 757, 964, 1316
MaeIII GTNAC 5 cut(s) 105, 571, 654, 847, 1072
MalI GATC 9 cut(s) 48, 446, 470, 486, 938, 1203, 1357, 1404, 1464
MboI GATC 9 cut(s) 46, 444, 468, 484, 936, 1201, 1355, 1402, 1462
MboII GAAGA 4 cut(s) 385, 446, 735, 1294
MfeI CAATTG 2 cut(s) 509, 1158
MflI RGATCY 2 cut(s) 468, 1402
MhlI GDGCHC 1 cut(s) 604
MluI ACGCGT 1 cut(s) 1094
Mly113I GGCGCC 1 cut(s) 581
MlyI GAGTC 5 cut(s) 341, 722, 1098, 1487, 1511
MmeI TCCRAC 2 cut(s) 315, 1290
MroXI GAANNNNTTC 2 cut(s) 66, 436
MseI TTAA 6 cut(s) 246, 497, 1011, 1254, 1346, 1475
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 4 cut(s) 720, 1112, 1274, 1538
MspR9I CCNGG 3 cut(s) 586, 1112, 1539
MunI CAATTG 2 cut(s) 509, 1158
MvaI CCWGG 1 cut(s) 586
MvnI CGCG 3 cut(s) 1096, 1354, 1487
MwoI GCNNNNNNNGC 5 cut(s) 608, 869, 1037, 1309, 1334
NarI GGCGCC 1 cut(s) 581
NciI CCSGG 2 cut(s) 1112, 1539
NdeI CATATG 1 cut(s) 997
NdeII GATC 9 cut(s) 46, 444, 468, 484, 936, 1201, 1355, 1402, 1462
NheI GCTAGC 1 cut(s) 40
NlaIII CATG 2 cut(s) 709, 870
NlaIV GGNNCC 6 cut(s) 237, 470, 481, 582, 639, 1558
NmeAIII GCCGAG 2 cut(s) 408, 1430
NmuCI GTSAC 3 cut(s) 105, 571, 1072
NsbI TGCGCA 1 cut(s) 803
PaeR7I CTCGAG 1 cut(s) 1495
PceI AGGCCT 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 638
PdmI GAANNNNTTC 2 cut(s) 66, 436
PfeI GAWTC 4 cut(s) 77, 437, 551, 982
PflFI GACNNNGTC 1 cut(s) 664
PkrI GCNGC 5 cut(s) 121, 136, 785, 865, 1305
Ple19I CGATCG 1 cut(s) 487
PleI GAGTC 5 cut(s) 340, 721, 1098, 1487, 1510
PluTI GGCGCC 1 cut(s) 584
PpsI GAGTC 5 cut(s) 340, 721, 1098, 1487, 1510
Ppu21I YACGTR 2 cut(s) 758, 965
Psp6I CCWGG 1 cut(s) 584
PspGI CCWGG 1 cut(s) 584
PspN4I GGNNCC 6 cut(s) 237, 470, 481, 582, 639, 1558
PspPI GGNCC 5 cut(s) 220, 480, 637, 1271, 1557
PspXI VCTCGAGB 1 cut(s) 1495
PsuI RGATCY 2 cut(s) 468, 1402
PsyI GACNNNGTC 1 cut(s) 664
PvuI CGATCG 1 cut(s) 487
RsaI GTAC 5 cut(s) 54, 451, 631, 756, 760
RsaNI GTAC 5 cut(s) 53, 450, 630, 755, 759
Rsr2I CGGWCCG 1 cut(s) 1271
RsrII CGGWCCG 1 cut(s) 1271
SaqAI TTAA 6 cut(s) 246, 497, 1011, 1254, 1346, 1475
SatI GCNGC 5 cut(s) 120, 135, 784, 864, 1304
Sau3AI GATC 9 cut(s) 46, 444, 468, 484, 936, 1201, 1355, 1402, 1462
Sau96I GGNCC 5 cut(s) 220, 480, 637, 1271, 1557
ScaI AGTACT 1 cut(s) 451
SchI GAGTC 5 cut(s) 341, 722, 1098, 1487, 1511
ScrFI CCNGG 3 cut(s) 586, 1112, 1539
SduI GDGCHC 1 cut(s) 604
SfaNI GCATC 4 cut(s) 285, 369, 1315, 1351
SfoI GGCGCC 1 cut(s) 582
Sfr274I CTCGAG 1 cut(s) 1495
SinI GGWCC 3 cut(s) 220, 637, 1271
SlaI CTCGAG 1 cut(s) 1495
SmlI CTYRAG 2 cut(s) 1145, 1495
SmoI CTYRAG 2 cut(s) 1145, 1495
SnaBI TACGTA 1 cut(s) 758
SseBI AGGCCT 1 cut(s) 66
SsiI CCGC 8 cut(s) 120, 132, 207, 617, 740, 1086, 1291, 1485
SspDI GGCGCC 1 cut(s) 580
SspMI CTAG 5 cut(s) 26, 41, 492, 576, 1512
StuI AGGCCT 1 cut(s) 66
StyD4I CCNGG 3 cut(s) 584, 1110, 1537
TaaI ACNGT 3 cut(s) 502, 634, 666
TaiI ACGT 3 cut(s) 760, 967, 1319
TaqI TCGA 3 cut(s) 430, 888, 1496
TatI WGTACW 1 cut(s) 449
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 4 cut(s) 77, 437, 551, 982
Tru1I TTAA 6 cut(s) 246, 497, 1011, 1254, 1346, 1475
Tru9I TTAA 6 cut(s) 246, 497, 1011, 1254, 1346, 1475
TscAI CASTG 3 cut(s) 307, 334, 348
TseFI GTSAC 3 cut(s) 105, 571, 1072
TseI GCWGC 4 cut(s) 134, 783, 863, 1303
Tsp45I GTSAC 3 cut(s) 105, 571, 1072
TspDTI ATGAA 3 cut(s) 242, 1233, 1295
TspGWI ACGGA 3 cut(s) 212, 431, 1284
TspRI CASTG 3 cut(s) 307, 334, 348
Tth111I GACNNNGTC 1 cut(s) 664
VpaK11BI GGWCC 3 cut(s) 220, 637, 1271
XagI CCTNNNNNAGG 1 cut(s) 60
XapI RAATTY 2 cut(s) 317, 1383
XhoI CTCGAG 1 cut(s) 1495
XmiI GTMKAC 1 cut(s) 523
XmnI GAANNNNTTC 2 cut(s) 66, 436
XspI CTAG 5 cut(s) 26, 41, 492, 576, 1512
ZrmI AGTACT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.