Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 32 - 100 | 1.6e-07 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 497 |
| AccB1I | GGYRCC | 2 cut(s) | 301, 691 |
| AccBSI | CCGCTC | 1 cut(s) | 867 |
| AccI | GTMKAC | 1 cut(s) | 606 |
| AciI | CCGC | 5 cut(s) | 689, 721, 790, 822, 865 |
| AcoI | YGGCCR | 2 cut(s) | 853, 862 |
| AcuI | CTGAAG | 1 cut(s) | 182 |
| AcyI | GRCGYC | 2 cut(s) | 692, 752 |
| AfaI | GTAC | 2 cut(s) | 178, 378 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 83, 406, 462, 674, 761 |
| AflIII | ACRYGT | 1 cut(s) | 683 |
| AgeI | ACCGGT | 1 cut(s) | 828 |
| AgsI | TTSAA | 3 cut(s) | 59, 68, 136 |
| AjnI | CCWGG | 1 cut(s) | 673 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 889, 921 |
| AluBI | AGCT | 5 cut(s) | 169, 247, 517, 706, 726 |
| AluI | AGCT | 5 cut(s) | 169, 247, 517, 706, 726 |
| Alw21I | GWGCWC | 2 cut(s) | 171, 493 |
| Alw26I | GTCTC | 2 cut(s) | 468, 743 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 562 |
| AoxI | GGCC | 4 cut(s) | 382, 637, 853, 862 |
| AsiGI | ACCGGT | 1 cut(s) | 828 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 131 |
| AspLEI | GCGC | 2 cut(s) | 498, 694 |
| AspS9I | GGNCC | 2 cut(s) | 453, 700 |
| AsuC2I | CCSGG | 1 cut(s) | 535 |
| AsuHPI | GGTGA | 6 cut(s) | 136, 274, 428, 553, 604, 638 |
| AvaII | GGWCC | 2 cut(s) | 453, 700 |
| BanI | GGYRCC | 2 cut(s) | 301, 691 |
| BanII | GRGCYC | 1 cut(s) | 171 |
| BbsI | GAAGAC | 1 cut(s) | 593 |
| Bbv12I | GWGCWC | 2 cut(s) | 171, 493 |
| BccI | CCATC | 7 cut(s) | 203, 314, 455, 617, 802, 811, 894 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 781, 815 |
| BciT130I | CCWGG | 1 cut(s) | 675 |
| BclI | TGATCA | 1 cut(s) | 594 |
| BcnI | CCSGG | 1 cut(s) | 535 |
| BcoDI | GTCTC | 2 cut(s) | 468, 743 |
| BfaI | CTAG | 2 cut(s) | 707, 756 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BfoI | RGCGCY | 1 cut(s) | 695 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 861 |
| BisI | GCNGC | 2 cut(s) | 690, 865 |
| BlsI | GCNGC | 2 cut(s) | 691, 866 |
| Bme1390I | CCNGG | 2 cut(s) | 535, 675 |
| Bme18I | GGWCC | 2 cut(s) | 453, 700 |
| BmgT120I | GGNCC | 2 cut(s) | 453, 700 |
| BmiI | GGNNCC | 2 cut(s) | 303, 693 |
| BmrFI | CCNGG | 2 cut(s) | 535, 675 |
| BmsI | GCATC | 3 cut(s) | 255, 507, 807 |
| BpiI | GAAGAC | 1 cut(s) | 593 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 495, 527 |
| BpmI | CTGGAG | 1 cut(s) | 584 |
| BpuEI | CTTGAG | 1 cut(s) | 497 |
| BpuMI | CCSGG | 1 cut(s) | 535 |
| BsaAI | YACGTR | 2 cut(s) | 380, 656 |
| BsaHI | GRCGYC | 2 cut(s) | 692, 752 |
| BsaJI | CCNNGG | 3 cut(s) | 278, 674, 856 |
| BsaWI | WCCGGW | 1 cut(s) | 828 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 557, 587 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 83, 406, 462, 674, 761 |
| Bse118I | RCCGGY | 1 cut(s) | 828 |
| Bse1I | ACTGG | 2 cut(s) | 640, 848 |
| BseBI | CCWGG | 1 cut(s) | 675 |
| BseDI | CCNNGG | 3 cut(s) | 278, 674, 856 |
| BseGI | GGATG | 5 cut(s) | 278, 325, 607, 628, 822 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 83, 406, 462, 674, 761 |
| BseNI | ACTGG | 2 cut(s) | 640, 848 |
| BseRI | GAGGAG | 3 cut(s) | 59, 381, 761 |
| BseYI | CCCAGC | 1 cut(s) | 726 |
| BsgI | GTGCAG | 1 cut(s) | 507 |
| Bsh1285I | CGRYCG | 2 cut(s) | 82, 779 |
| BshFI | GGCC | 4 cut(s) | 384, 639, 855, 864 |
| BshNI | GGYRCC | 2 cut(s) | 301, 691 |
| BshTI | ACCGGT | 1 cut(s) | 828 |
| BsiEI | CGRYCG | 2 cut(s) | 82, 779 |
| BsiHKAI | GWGCWC | 2 cut(s) | 171, 493 |
| BsiSI | CCGG | 3 cut(s) | 535, 695, 829 |
| BsiWI | CGTACG | 1 cut(s) | 176 |
| BslFI | GGGAC | 1 cut(s) | 857 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 83, 406, 462, 674, 761 |
| BsmAI | GTCTC | 2 cut(s) | 468, 743 |
| BsmBI | CGTCTC | 1 cut(s) | 743 |
| BsmFI | GGGAC | 1 cut(s) | 857 |
| BsnI | GGCC | 4 cut(s) | 384, 639, 855, 864 |
| Bsp1286I | GDGCHC | 2 cut(s) | 171, 493 |
| Bsp143I | GATC | 3 cut(s) | 79, 217, 594 |
| BspACI | CCGC | 5 cut(s) | 689, 721, 790, 822, 865 |
| BspANI | GGCC | 4 cut(s) | 384, 639, 855, 864 |
| BspLI | GGNNCC | 2 cut(s) | 303, 693 |
| BspMAI | CTGCAG | 1 cut(s) | 37 |
| BspT107I | GGYRCC | 2 cut(s) | 301, 691 |
| BsrBI | CCGCTC | 1 cut(s) | 867 |
| BsrFI | RCCGGY | 1 cut(s) | 828 |
| BsrI | ACTGG | 2 cut(s) | 640, 848 |
| BssAI | RCCGGY | 1 cut(s) | 828 |
| BssECI | CCNNGG | 3 cut(s) | 278, 674, 856 |
| BssMI | GATC | 3 cut(s) | 79, 217, 594 |
| BssNI | GRCGYC | 2 cut(s) | 692, 752 |
| BssT1I | CCWWGG | 1 cut(s) | 278 |
| Bst2UI | CCWGG | 1 cut(s) | 675 |
| Bst4CI | ACNGT | 1 cut(s) | 592 |
| Bst6I | CTCTTC | 1 cut(s) | 312 |
| BstACI | GRCGYC | 2 cut(s) | 692, 752 |
| BstBAI | YACGTR | 2 cut(s) | 380, 656 |
| BstDEI | CTNAG | 1 cut(s) | 482 |
| BstEII | GGTNACC | 1 cut(s) | 824 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 404, 759 |
| BstF5I | GGATG | 5 cut(s) | 278, 325, 607, 628, 822 |
| BstH2I | RGCGCY | 1 cut(s) | 695 |
| BstHHI | GCGC | 2 cut(s) | 498, 694 |
| BstKTI | GATC | 3 cut(s) | 82, 220, 597 |
| BstMAI | GTCTC | 2 cut(s) | 468, 743 |
| BstMBI | GATC | 3 cut(s) | 79, 217, 594 |
| BstMCI | CGRYCG | 2 cut(s) | 82, 779 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 861 |
| BstNI | CCWGG | 1 cut(s) | 675 |
| BstNSI | RCATGY | 1 cut(s) | 687 |
| BstPI | GGTNACC | 1 cut(s) | 824 |
| BstSCI | CCNGG | 2 cut(s) | 533, 673 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstSNI | TACGTA | 1 cut(s) | 656 |
| BstV2I | GAAGAC | 1 cut(s) | 593 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 647, 710 |
| BsuRI | GGCC | 4 cut(s) | 384, 639, 855, 864 |
| BtsCI | GGATG | 5 cut(s) | 278, 325, 607, 628, 822 |
| CaiI | CAGNNNCTG | 1 cut(s) | 562 |
| CfoI | GCGC | 2 cut(s) | 498, 694 |
| Cfr10I | RCCGGY | 1 cut(s) | 828 |
| Cfr13I | GGNCC | 2 cut(s) | 453, 700 |
| CseI | GACGC | 1 cut(s) | 760 |
| Csp6I | GTAC | 2 cut(s) | 177, 377 |
| CspAI | ACCGGT | 1 cut(s) | 828 |
| CviAII | CATG | 3 cut(s) | 359, 684, 851 |
| CviQI | GTAC | 2 cut(s) | 177, 377 |
| DdeI | CTNAG | 1 cut(s) | 482 |
| DinI | GGCGCC | 1 cut(s) | 693 |
| DpnI | GATC | 3 cut(s) | 81, 219, 596 |
| DpnII | GATC | 3 cut(s) | 79, 217, 594 |
| EaeI | YGGCCR | 2 cut(s) | 853, 862 |
| Eam1104I | CTCTTC | 1 cut(s) | 312 |
| EarI | CTCTTC | 1 cut(s) | 312 |
| Ecl136II | GAGCTC | 1 cut(s) | 169 |
| Eco105I | TACGTA | 1 cut(s) | 656 |
| Eco130I | CCWWGG | 1 cut(s) | 278 |
| Eco24I | GRGCYC | 1 cut(s) | 171 |
| Eco47I | GGWCC | 2 cut(s) | 453, 700 |
| Eco53kI | GAGCTC | 1 cut(s) | 169 |
| Eco57I | CTGAAG | 1 cut(s) | 182 |
| Eco91I | GGTNACC | 1 cut(s) | 824 |
| EcoICRI | GAGCTC | 1 cut(s) | 169 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 404, 759 |
| EcoO65I | GGTNACC | 1 cut(s) | 824 |
| EcoRII | CCWGG | 1 cut(s) | 673 |
| EcoT14I | CCWWGG | 1 cut(s) | 278 |
| EcoT38I | GRGCYC | 1 cut(s) | 171 |
| EgeI | GGCGCC | 1 cut(s) | 693 |
| EheI | GGCGCC | 1 cut(s) | 693 |
| ErhI | CCWWGG | 1 cut(s) | 278 |
| Esp3I | CGTCTC | 1 cut(s) | 743 |
| FaeI | CATG | 3 cut(s) | 362, 687, 854 |
| FaqI | GGGAC | 1 cut(s) | 857 |
| FatI | CATG | 3 cut(s) | 358, 683, 850 |
| FauNDI | CATATG | 1 cut(s) | 197 |
| FbaI | TGATCA | 1 cut(s) | 594 |
| FblI | GTMKAC | 1 cut(s) | 606 |
| Fnu4HI | GCNGC | 2 cut(s) | 690, 865 |
| FokI | GGATG | 5 cut(s) | 285, 332, 614, 635, 829 |
| FriOI | GRGCYC | 1 cut(s) | 171 |
| Fsp4HI | GCNGC | 2 cut(s) | 690, 865 |
| FspBI | CTAG | 2 cut(s) | 707, 756 |
| FspI | TGCGCA | 1 cut(s) | 497 |
| GlaI | GCGC | 2 cut(s) | 497, 693 |
| GluI | GCNGC | 2 cut(s) | 690, 865 |
| GsaI | CCCAGC | 1 cut(s) | 730 |
| GsuI | CTGGAG | 1 cut(s) | 584 |
| HaeII | RGCGCY | 1 cut(s) | 695 |
| HaeIII | GGCC | 4 cut(s) | 384, 639, 855, 864 |
| HapII | CCGG | 3 cut(s) | 535, 695, 829 |
| HgaI | GACGC | 1 cut(s) | 760 |
| HhaI | GCGC | 2 cut(s) | 498, 694 |
| Hin1I | GRCGYC | 2 cut(s) | 692, 752 |
| Hin1II | CATG | 3 cut(s) | 362, 687, 854 |
| Hin6I | GCGC | 2 cut(s) | 496, 692 |
| HinP1I | GCGC | 2 cut(s) | 496, 692 |
| HindIII | AAGCTT | 1 cut(s) | 515 |
| HinfI | GANTC | 6 cut(s) | 68, 239, 328, 370, 510, 559 |
| HpaII | CCGG | 3 cut(s) | 535, 695, 829 |
| HphI | GGTGA | 6 cut(s) | 136, 274, 428, 553, 604, 638 |
| Hpy166II | GTNNAC | 4 cut(s) | 607, 629, 681, 773 |
| Hpy188I | TCNGA | 6 cut(s) | 20, 217, 244, 503, 558, 617 |
| Hpy188III | TCNNGA | 4 cut(s) | 77, 367, 563, 762 |
| Hpy8I | GTNNAC | 4 cut(s) | 607, 629, 681, 773 |
| HpyAV | CCTTC | 7 cut(s) | 53, 157, 175, 253, 538, 807, 887 |
| HpyCH4III | ACNGT | 1 cut(s) | 592 |
| HpyCH4IV | ACGT | 2 cut(s) | 379, 655 |
| HpyCH4V | TGCA | 4 cut(s) | 35, 268, 524, 884 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 861 |
| HpyF3I | CTNAG | 1 cut(s) | 482 |
| HpySE526I | ACGT | 2 cut(s) | 379, 655 |
| Hsp92I | GRCGYC | 2 cut(s) | 692, 752 |
| Hsp92II | CATG | 3 cut(s) | 362, 687, 854 |
| HspAI | GCGC | 2 cut(s) | 496, 692 |
| KasI | GGCGCC | 1 cut(s) | 691 |
| Ksp22I | TGATCA | 1 cut(s) | 594 |
| Kzo9I | GATC | 3 cut(s) | 79, 217, 594 |
| LmnI | GCTCC | 4 cut(s) | 166, 184, 244, 723 |
| LweI | GCATC | 3 cut(s) | 255, 507, 807 |
| MaeI | CTAG | 2 cut(s) | 707, 756 |
| MaeII | ACGT | 2 cut(s) | 379, 655 |
| MaeIII | GTNAC | 3 cut(s) | 651, 824, 839 |
| MalI | GATC | 3 cut(s) | 81, 219, 596 |
| MbiI | CCGCTC | 1 cut(s) | 867 |
| MboI | GATC | 3 cut(s) | 79, 217, 594 |
| MboII | GAAGA | 3 cut(s) | 299, 598, 909 |
| MhlI | GDGCHC | 2 cut(s) | 171, 493 |
| MluCI | AATT | 2 cut(s) | 528, 912 |
| Mly113I | GGCGCC | 1 cut(s) | 692 |
| MlyI | GAGTC | 2 cut(s) | 322, 504 |
| MmeI | TCCRAC | 1 cut(s) | 723 |
| MroXI | GAANNNNTTC | 1 cut(s) | 131 |
| MseI | TTAA | 3 cut(s) | 153, 633, 783 |
| MspI | CCGG | 3 cut(s) | 535, 695, 829 |
| MspR9I | CCNGG | 2 cut(s) | 535, 675 |
| MvaI | CCWGG | 1 cut(s) | 675 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 861 |
| NarI | GGCGCC | 1 cut(s) | 692 |
| NciI | CCSGG | 1 cut(s) | 535 |
| NdeI | CATATG | 1 cut(s) | 197 |
| NdeII | GATC | 3 cut(s) | 79, 217, 594 |
| NlaIII | CATG | 3 cut(s) | 362, 687, 854 |
| NlaIV | GGNNCC | 2 cut(s) | 303, 693 |
| NmeAIII | GCCGAG | 1 cut(s) | 881 |
| NmuCI | GTSAC | 1 cut(s) | 839 |
| NsbI | TGCGCA | 1 cut(s) | 497 |
| NspI | RCATGY | 1 cut(s) | 687 |
| PciI | ACATGT | 1 cut(s) | 683 |
| PdmI | GAANNNNTTC | 1 cut(s) | 131 |
| PfeI | GAWTC | 4 cut(s) | 68, 239, 370, 559 |
| Pfl23II | CGTACG | 1 cut(s) | 176 |
| PinAI | ACCGGT | 1 cut(s) | 828 |
| PkrI | GCNGC | 2 cut(s) | 691, 866 |
| Ple19I | CGATCG | 1 cut(s) | 82 |
| PleI | GAGTC | 2 cut(s) | 322, 504 |
| PluTI | GGCGCC | 1 cut(s) | 695 |
| PpsI | GAGTC | 2 cut(s) | 322, 504 |
| Ppu21I | YACGTR | 2 cut(s) | 380, 656 |
| PscI | ACATGT | 1 cut(s) | 683 |
| Psp124BI | GAGCTC | 1 cut(s) | 171 |
| Psp6I | CCWGG | 1 cut(s) | 673 |
| PspEI | GGTNACC | 1 cut(s) | 824 |
| PspFI | CCCAGC | 1 cut(s) | 726 |
| PspGI | CCWGG | 1 cut(s) | 673 |
| PspLI | CGTACG | 1 cut(s) | 176 |
| PspN4I | GGNNCC | 2 cut(s) | 303, 693 |
| PspPI | GGNCC | 2 cut(s) | 453, 700 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 99, 131 |
| PstI | CTGCAG | 1 cut(s) | 37 |
| PstNI | CAGNNNCTG | 1 cut(s) | 562 |
| PvuI | CGATCG | 1 cut(s) | 82 |
| RsaI | GTAC | 2 cut(s) | 178, 378 |
| RsaNI | GTAC | 2 cut(s) | 177, 377 |
| SacI | GAGCTC | 1 cut(s) | 171 |
| SaqAI | TTAA | 3 cut(s) | 153, 633, 783 |
| SatI | GCNGC | 2 cut(s) | 690, 865 |
| Sau3AI | GATC | 3 cut(s) | 79, 217, 594 |
| Sau96I | GGNCC | 2 cut(s) | 453, 700 |
| SchI | GAGTC | 2 cut(s) | 322, 504 |
| ScrFI | CCNGG | 2 cut(s) | 535, 675 |
| SduI | GDGCHC | 2 cut(s) | 171, 493 |
| SfaNI | GCATC | 3 cut(s) | 255, 507, 807 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 861 |
| SfoI | GGCGCC | 1 cut(s) | 693 |
| SinI | GGWCC | 2 cut(s) | 453, 700 |
| SmlI | CTYRAG | 1 cut(s) | 512 |
| SmoI | CTYRAG | 1 cut(s) | 512 |
| SnaBI | TACGTA | 1 cut(s) | 656 |
| Sse9I | AATT | 2 cut(s) | 528, 912 |
| SsiI | CCGC | 5 cut(s) | 689, 721, 790, 822, 865 |
| SspDI | GGCGCC | 1 cut(s) | 691 |
| SspMI | CTAG | 2 cut(s) | 707, 756 |
| SstI | GAGCTC | 1 cut(s) | 171 |
| StyD4I | CCNGG | 2 cut(s) | 533, 673 |
| StyI | CCWWGG | 1 cut(s) | 278 |
| TaaI | ACNGT | 1 cut(s) | 592 |
| TaiI | ACGT | 2 cut(s) | 382, 658 |
| TaqI | TCGA | 2 cut(s) | 288, 891 |
| TaqII | GACCGA | 2 cut(s) | 470, 793 |
| TasI | AATT | 2 cut(s) | 528, 912 |
| TauI | GCSGC | 2 cut(s) | 692, 867 |
| TfiI | GAWTC | 4 cut(s) | 68, 239, 370, 559 |
| Tru1I | TTAA | 3 cut(s) | 153, 633, 783 |
| Tru9I | TTAA | 3 cut(s) | 153, 633, 783 |
| TseFI | GTSAC | 1 cut(s) | 839 |
| Tsp45I | GTSAC | 1 cut(s) | 839 |
| TspDTI | ATGAA | 1 cut(s) | 375 |
| TspGWI | ACGGA | 1 cut(s) | 332 |
| VpaK11BI | GGWCC | 2 cut(s) | 453, 700 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 404, 759 |
| XceI | RCATGY | 1 cut(s) | 687 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 534, 675 |
| XmiI | GTMKAC | 1 cut(s) | 606 |
| XmnI | GAANNNNTTC | 1 cut(s) | 131 |
| XspI | CTAG | 2 cut(s) | 707, 756 |