ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 301, 688 |
| AccBSI | CCGCTC | 2 cut(s) | 208, 319 |
| AccIII | TCCGGA | 1 cut(s) | 658 |
| AciI | CCGC | 6 cut(s) | 94, 208, 319, 461, 478, 620 |
| AclWI | GGATC | 5 cut(s) | 178, 191, 353, 567, 714 |
| AcoI | YGGCCR | 1 cut(s) | 95 |
| AcsI | RAATTY | 2 cut(s) | 104, 411 |
| AcuI | CTGAAG | 1 cut(s) | 302 |
| AcyI | GRCGYC | 1 cut(s) | 689 |
| AfaI | GTAC | 2 cut(s) | 166, 528 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 236, 427, 583, 658, 707 |
| AgsI | TTSAA | 1 cut(s) | 236 |
| AjnI | CCWGG | 3 cut(s) | 212, 722, 814 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 447, 479, 630, 662 |
| AluBI | AGCT | 3 cut(s) | 243, 504, 613 |
| AluI | AGCT | 3 cut(s) | 243, 504, 613 |
| Alw21I | GWGCWC | 1 cut(s) | 245 |
| Alw26I | GTCTC | 1 cut(s) | 376 |
| AlwI | GGATC | 5 cut(s) | 178, 191, 353, 567, 714 |
| Ama87I | CYCGRG | 2 cut(s) | 246, 576 |
| Aor13HI | TCCGGA | 1 cut(s) | 658 |
| AoxI | GGCC | 3 cut(s) | 95, 621, 649 |
| ApeKI | GCWGC | 1 cut(s) | 613 |
| ApoI | RAATTY | 2 cut(s) | 104, 411 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 107 |
| AspLEI | GCGC | 1 cut(s) | 691 |
| AspS9I | GGNCC | 1 cut(s) | 210 |
| AsuC2I | CCSGG | 2 cut(s) | 577, 578 |
| AsuHPI | GGTGA | 2 cut(s) | 131, 647 |
| AsuII | TTCGAA | 2 cut(s) | 453, 763 |
| AsuNHI | GCTAGC | 1 cut(s) | 616 |
| AvaI | CYCGRG | 2 cut(s) | 246, 576 |
| AvaII | GGWCC | 1 cut(s) | 210 |
| BaeGI | GKGCMC | 1 cut(s) | 304 |
| BamHI | GGATCC | 1 cut(s) | 183 |
| BanI | GGYRCC | 2 cut(s) | 301, 688 |
| BanII | GRGCYC | 2 cut(s) | 245, 325 |
| BbsI | GAAGAC | 1 cut(s) | 674 |
| Bbv12I | GWGCWC | 1 cut(s) | 245 |
| BbvI | GCAGC | 1 cut(s) | 600 |
| BccI | CCATC | 1 cut(s) | 341 |
| BceAI | ACGGC | 1 cut(s) | 317 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 291, 325, 572, 606 |
| BciT130I | CCWGG | 3 cut(s) | 214, 724, 816 |
| BclI | TGATCA | 1 cut(s) | 714 |
| BcnI | CCSGG | 2 cut(s) | 577, 578 |
| BcoDI | GTCTC | 1 cut(s) | 376 |
| BfaI | CTAG | 3 cut(s) | 188, 297, 617 |
| BfmI | CTRYAG | 1 cut(s) | 377 |
| BfoI | RGCGCY | 1 cut(s) | 692 |
| BisI | GCNGC | 3 cut(s) | 95, 614, 621 |
| BlsI | GCNGC | 3 cut(s) | 96, 615, 622 |
| BmcAI | AGTACT | 1 cut(s) | 166 |
| Bme1390I | CCNGG | 5 cut(s) | 214, 577, 578, 724, 816 |
| Bme18I | GGWCC | 1 cut(s) | 210 |
| BmeT110I | CYCGRG | 2 cut(s) | 246, 576 |
| BmgT120I | GGNCC | 1 cut(s) | 210 |
| BmiI | GGNNCC | 3 cut(s) | 185, 303, 690 |
| BmrFI | CCNGG | 5 cut(s) | 214, 577, 578, 724, 816 |
| BmrI | ACTGGG | 1 cut(s) | 379 |
| BmsI | GCATC | 4 cut(s) | 181, 281, 448, 787 |
| BmtI | GCTAGC | 1 cut(s) | 620 |
| BmuI | ACTGGG | 1 cut(s) | 379 |
| BpiI | GAAGAC | 1 cut(s) | 674 |
| Bpu14I | TTCGAA | 2 cut(s) | 453, 763 |
| BpuMI | CCSGG | 2 cut(s) | 577, 578 |
| Bsa29I | ATCGAT | 2 cut(s) | 571, 804 |
| BsaBI | GATNNNNATC | 2 cut(s) | 195, 747 |
| BsaHI | GRCGYC | 1 cut(s) | 689 |
| BsaJI | CCNNGG | 7 cut(s) | 305, 333, 508, 576, 577, 628, 723 |
| BsaWI | WCCGGW | 1 cut(s) | 658 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 236, 427, 583, 658, 707 |
| Bse1I | ACTGG | 2 cut(s) | 385, 487 |
| Bse8I | GATNNNNATC | 2 cut(s) | 195, 747 |
| BseAI | TCCGGA | 1 cut(s) | 658 |
| BseBI | CCWGG | 3 cut(s) | 214, 724, 816 |
| BseCI | ATCGAT | 2 cut(s) | 571, 804 |
| BseDI | CCNNGG | 7 cut(s) | 305, 333, 508, 576, 577, 628, 723 |
| BseGI | GGATG | 3 cut(s) | 436, 655, 787 |
| BseJI | GATNNNNATC | 2 cut(s) | 195, 747 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 236, 427, 583, 658, 707 |
| BseMII | CTCAG | 3 cut(s) | 89, 412, 816 |
| BseNI | ACTGG | 2 cut(s) | 385, 487 |
| BseRI | GAGGAG | 1 cut(s) | 743 |
| BseSI | GKGCMC | 1 cut(s) | 304 |
| BseXI | GCAGC | 1 cut(s) | 600 |
| Bsh1285I | CGRYCG | 1 cut(s) | 804 |
| BshFI | GGCC | 3 cut(s) | 97, 623, 651 |
| BshNI | GGYRCC | 2 cut(s) | 301, 688 |
| BshVI | ATCGAT | 2 cut(s) | 571, 804 |
| BsiEI | CGRYCG | 1 cut(s) | 804 |
| BsiHKAI | GWGCWC | 1 cut(s) | 245 |
| BsiHKCI | CYCGRG | 2 cut(s) | 246, 576 |
| BsiSI | CCGG | 2 cut(s) | 577, 659 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 236, 427, 583, 658, 707 |
| BsmAI | GTCTC | 1 cut(s) | 376 |
| BsnI | GGCC | 3 cut(s) | 97, 623, 651 |
| BsoBI | CYCGRG | 2 cut(s) | 246, 576 |
| Bsp119I | TTCGAA | 2 cut(s) | 453, 763 |
| Bsp1286I | GDGCHC | 3 cut(s) | 245, 304, 325 |
| Bsp13I | TCCGGA | 1 cut(s) | 658 |
| Bsp143I | GATC | 7 cut(s) | 183, 277, 358, 572, 714, 719, 801 |
| Bsp19I | CCATGG | 1 cut(s) | 305 |
| BspACI | CCGC | 6 cut(s) | 94, 208, 319, 461, 478, 620 |
| BspANI | GGCC | 3 cut(s) | 97, 623, 651 |
| BspCNI | CTCAG | 3 cut(s) | 88, 411, 817 |
| BspDI | ATCGAT | 2 cut(s) | 571, 804 |
| BspEI | TCCGGA | 1 cut(s) | 658 |
| BspLI | GGNNCC | 3 cut(s) | 185, 303, 690 |
| BspMAI | CTGCAG | 1 cut(s) | 381 |
| BspOI | GCTAGC | 1 cut(s) | 620 |
| BspPI | GGATC | 5 cut(s) | 178, 191, 353, 567, 714 |
| BspT104I | TTCGAA | 2 cut(s) | 453, 763 |
| BspT107I | GGYRCC | 2 cut(s) | 301, 688 |
| BsrBI | CCGCTC | 2 cut(s) | 208, 319 |
| BsrI | ACTGG | 2 cut(s) | 385, 487 |
| BssECI | CCNNGG | 7 cut(s) | 305, 333, 508, 576, 577, 628, 723 |
| BssMI | GATC | 7 cut(s) | 183, 277, 358, 572, 714, 719, 801 |
| BssNI | GRCGYC | 1 cut(s) | 689 |
| BssT1I | CCWWGG | 2 cut(s) | 305, 508 |
| Bst2UI | CCWGG | 3 cut(s) | 214, 724, 816 |
| Bst6I | CTCTTC | 1 cut(s) | 74 |
| BstACI | GRCGYC | 1 cut(s) | 689 |
| BstBI | TTCGAA | 2 cut(s) | 453, 763 |
| BstC8I | GCNNGC | 4 cut(s) | 321, 618, 738, 821 |
| BstDEI | CTNAG | 3 cut(s) | 75, 398, 825 |
| BstDSI | CCRYGG | 3 cut(s) | 305, 333, 628 |
| BstF5I | GGATG | 3 cut(s) | 436, 655, 787 |
| BstH2I | RGCGCY | 1 cut(s) | 692 |
| BstHHI | GCGC | 1 cut(s) | 691 |
| BstKTI | GATC | 7 cut(s) | 186, 280, 361, 575, 717, 722, 804 |
| BstMAI | GTCTC | 1 cut(s) | 376 |
| BstMBI | GATC | 7 cut(s) | 183, 277, 358, 572, 714, 719, 801 |
| BstMCI | CGRYCG | 1 cut(s) | 804 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 62, 91, 329 |
| BstNI | CCWGG | 3 cut(s) | 214, 724, 816 |
| BstSCI | CCNGG | 5 cut(s) | 212, 575, 576, 722, 814 |
| BstSFI | CTRYAG | 1 cut(s) | 377 |
| BstSLI | GKGCMC | 1 cut(s) | 304 |
| BstV1I | GCAGC | 1 cut(s) | 600 |
| BstV2I | GAAGAC | 1 cut(s) | 674 |
| BstX2I | RGATCY | 2 cut(s) | 183, 719 |
| BstYI | RGATCY | 2 cut(s) | 183, 719 |
| Bsu15I | ATCGAT | 2 cut(s) | 571, 804 |
| BsuRI | GGCC | 3 cut(s) | 97, 623, 651 |
| BsuTUI | ATCGAT | 2 cut(s) | 571, 804 |
| BtgI | CCRYGG | 3 cut(s) | 305, 333, 628 |
| BtsCI | GGATG | 3 cut(s) | 436, 655, 787 |
| BtsI | GCAGTG | 1 cut(s) | 63 |
| BtsIMutI | CAGTG | 3 cut(s) | 63, 480, 758 |
| Cac8I | GCNNGC | 4 cut(s) | 321, 618, 738, 821 |
| CfoI | GCGC | 1 cut(s) | 691 |
| Cfr13I | GGNCC | 1 cut(s) | 210 |
| Cfr9I | CCCGGG | 1 cut(s) | 576 |
| ClaI | ATCGAT | 2 cut(s) | 571, 804 |
| Csp6I | GTAC | 2 cut(s) | 165, 527 |
| CviAII | CATG | 1 cut(s) | 306 |
| CviQI | GTAC | 2 cut(s) | 165, 527 |
| DdeI | CTNAG | 3 cut(s) | 75, 398, 825 |
| DinI | GGCGCC | 1 cut(s) | 690 |
| DpnI | GATC | 7 cut(s) | 185, 279, 360, 574, 716, 721, 803 |
| DpnII | GATC | 7 cut(s) | 183, 277, 358, 572, 714, 719, 801 |
| EaeI | YGGCCR | 1 cut(s) | 95 |
| Eam1104I | CTCTTC | 1 cut(s) | 74 |
| EarI | CTCTTC | 1 cut(s) | 74 |
| Ecl136II | GAGCTC | 1 cut(s) | 243 |
| Eco130I | CCWWGG | 2 cut(s) | 305, 508 |
| Eco24I | GRGCYC | 2 cut(s) | 245, 325 |
| Eco47I | GGWCC | 1 cut(s) | 210 |
| Eco53kI | GAGCTC | 1 cut(s) | 243 |
| Eco57I | CTGAAG | 1 cut(s) | 302 |
| Eco88I | CYCGRG | 2 cut(s) | 246, 576 |
| EcoICRI | GAGCTC | 1 cut(s) | 243 |
| EcoRI | GAATTC | 1 cut(s) | 411 |
| EcoRII | CCWGG | 3 cut(s) | 212, 722, 814 |
| EcoT14I | CCWWGG | 2 cut(s) | 305, 508 |
| EcoT22I | ATGCAT | 1 cut(s) | 274 |
| EcoT38I | GRGCYC | 2 cut(s) | 245, 325 |
| EgeI | GGCGCC | 1 cut(s) | 690 |
| EheI | GGCGCC | 1 cut(s) | 690 |
| ErhI | CCWWGG | 2 cut(s) | 305, 508 |
| FaeI | CATG | 1 cut(s) | 309 |
| FatI | CATG | 1 cut(s) | 305 |
| FauI | CCCGC | 1 cut(s) | 312 |
| FauNDI | CATATG | 1 cut(s) | 268 |
| FbaI | TGATCA | 1 cut(s) | 714 |
| Fnu4HI | GCNGC | 3 cut(s) | 95, 614, 621 |
| FokI | GGATG | 3 cut(s) | 443, 642, 794 |
| FriOI | GRGCYC | 2 cut(s) | 245, 325 |
| Fsp4HI | GCNGC | 3 cut(s) | 95, 614, 621 |
| FspBI | CTAG | 3 cut(s) | 188, 297, 617 |
| GlaI | GCGC | 1 cut(s) | 690 |
| GluI | GCNGC | 3 cut(s) | 95, 614, 621 |
| HaeII | RGCGCY | 1 cut(s) | 692 |
| HaeIII | GGCC | 3 cut(s) | 97, 623, 651 |
| HapII | CCGG | 2 cut(s) | 577, 659 |
| HhaI | GCGC | 1 cut(s) | 691 |
| Hin1I | GRCGYC | 1 cut(s) | 689 |
| Hin1II | CATG | 1 cut(s) | 309 |
| Hin6I | GCGC | 1 cut(s) | 689 |
| HinP1I | GCGC | 1 cut(s) | 689 |
| HinfI | GANTC | 4 cut(s) | 152, 369, 450, 743 |
| HpaII | CCGG | 2 cut(s) | 577, 659 |
| HphI | GGTGA | 2 cut(s) | 131, 647 |
| Hpy188I | TCNGA | 8 cut(s) | 30, 78, 205, 277, 282, 401, 714, 719 |
| Hpy188III | TCNNGA | 2 cut(s) | 593, 659 |
| HpyAV | CCTTC | 2 cut(s) | 230, 679 |
| HpyCH4V | TGCA | 4 cut(s) | 194, 266, 272, 379 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 62, 91, 329 |
| HpyF3I | CTNAG | 3 cut(s) | 75, 398, 825 |
| Hsp92I | GRCGYC | 1 cut(s) | 689 |
| Hsp92II | CATG | 1 cut(s) | 309 |
| HspAI | GCGC | 1 cut(s) | 689 |
| KasI | GGCGCC | 1 cut(s) | 688 |
| Kpn2I | TCCGGA | 1 cut(s) | 658 |
| Ksp22I | TGATCA | 1 cut(s) | 714 |
| Kzo9I | GATC | 7 cut(s) | 183, 277, 358, 572, 714, 719, 801 |
| LmnI | GCTCC | 2 cut(s) | 240, 610 |
| Lsp1109I | GCAGC | 1 cut(s) | 600 |
| LweI | GCATC | 4 cut(s) | 181, 281, 448, 787 |
| MaeI | CTAG | 3 cut(s) | 188, 297, 617 |
| MaeIII | GTNAC | 2 cut(s) | 292, 340 |
| MalI | GATC | 7 cut(s) | 185, 279, 360, 574, 716, 721, 803 |
| MbiI | CCGCTC | 2 cut(s) | 208, 319 |
| MboI | GATC | 7 cut(s) | 183, 277, 358, 572, 714, 719, 801 |
| MboII | GAAGA | 6 cut(s) | 91, 446, 467, 512, 676, 679 |
| MfeI | CAATTG | 1 cut(s) | 231 |
| MflI | RGATCY | 2 cut(s) | 183, 719 |
| MhlI | GDGCHC | 3 cut(s) | 245, 304, 325 |
| MluCI | AATT | 7 cut(s) | 32, 104, 122, 159, 231, 402, 411 |
| Mly113I | GGCGCC | 1 cut(s) | 689 |
| MlyI | GAGTC | 2 cut(s) | 146, 378 |
| Mph1103I | ATGCAT | 1 cut(s) | 274 |
| MroI | TCCGGA | 1 cut(s) | 658 |
| MroXI | GAANNNNTTC | 1 cut(s) | 107 |
| MseI | TTAA | 1 cut(s) | 158 |
| MspA1I | CMGCKG | 1 cut(s) | 94 |
| MspI | CCGG | 2 cut(s) | 577, 659 |
| MspR9I | CCNGG | 5 cut(s) | 214, 577, 578, 724, 816 |
| MunI | CAATTG | 1 cut(s) | 231 |
| MvaI | CCWGG | 3 cut(s) | 214, 724, 816 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 62, 91, 329 |
| NarI | GGCGCC | 1 cut(s) | 689 |
| NciI | CCSGG | 2 cut(s) | 577, 578 |
| NcoI | CCATGG | 1 cut(s) | 305 |
| NdeI | CATATG | 1 cut(s) | 268 |
| NdeII | GATC | 7 cut(s) | 183, 277, 358, 572, 714, 719, 801 |
| NheI | GCTAGC | 1 cut(s) | 616 |
| NlaIII | CATG | 1 cut(s) | 309 |
| NlaIV | GGNNCC | 3 cut(s) | 185, 303, 690 |
| NsiI | ATGCAT | 1 cut(s) | 274 |
| NspV | TTCGAA | 2 cut(s) | 453, 763 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 801 |
| PdmI | GAANNNNTTC | 1 cut(s) | 107 |
| PfeI | GAWTC | 2 cut(s) | 450, 743 |
| PkrI | GCNGC | 3 cut(s) | 96, 615, 622 |
| Ple19I | CGATCG | 1 cut(s) | 804 |
| PleI | GAGTC | 2 cut(s) | 146, 377 |
| PluTI | GGCGCC | 1 cut(s) | 692 |
| PpsI | GAGTC | 2 cut(s) | 146, 377 |
| Psp124BI | GAGCTC | 1 cut(s) | 245 |
| Psp6I | CCWGG | 3 cut(s) | 212, 722, 814 |
| PspGI | CCWGG | 3 cut(s) | 212, 722, 814 |
| PspN4I | GGNNCC | 3 cut(s) | 185, 303, 690 |
| PspPI | GGNCC | 1 cut(s) | 210 |
| PstI | CTGCAG | 1 cut(s) | 381 |
| PsuI | RGATCY | 2 cut(s) | 183, 719 |
| PvuI | CGATCG | 1 cut(s) | 804 |
| RsaI | GTAC | 2 cut(s) | 166, 528 |
| RsaNI | GTAC | 2 cut(s) | 165, 527 |
| SacI | GAGCTC | 1 cut(s) | 245 |
| SaqAI | TTAA | 1 cut(s) | 158 |
| SatI | GCNGC | 3 cut(s) | 95, 614, 621 |
| Sau3AI | GATC | 7 cut(s) | 183, 277, 358, 572, 714, 719, 801 |
| Sau96I | GGNCC | 1 cut(s) | 210 |
| ScaI | AGTACT | 1 cut(s) | 166 |
| SchI | GAGTC | 2 cut(s) | 146, 378 |
| ScrFI | CCNGG | 5 cut(s) | 214, 577, 578, 724, 816 |
| SduI | GDGCHC | 3 cut(s) | 245, 304, 325 |
| SetI | ASST | 8 cut(s) | 218, 245, 473, 506, 510, 615, 647, 676 |
| SfaNI | GCATC | 4 cut(s) | 181, 281, 448, 787 |
| SfcI | CTRYAG | 1 cut(s) | 377 |
| SfoI | GGCGCC | 1 cut(s) | 690 |
| SfuI | TTCGAA | 2 cut(s) | 453, 763 |
| SinI | GGWCC | 1 cut(s) | 210 |
| SmaI | CCCGGG | 1 cut(s) | 578 |
| Sse9I | AATT | 7 cut(s) | 32, 104, 122, 159, 231, 402, 411 |
| SsiI | CCGC | 6 cut(s) | 94, 208, 319, 461, 478, 620 |
| SspDI | GGCGCC | 1 cut(s) | 688 |
| SspMI | CTAG | 3 cut(s) | 188, 297, 617 |
| SstI | GAGCTC | 1 cut(s) | 245 |
| StyD4I | CCNGG | 5 cut(s) | 212, 575, 576, 722, 814 |
| StyI | CCWWGG | 2 cut(s) | 305, 508 |
| TaqI | TCGA | 6 cut(s) | 453, 523, 556, 571, 763, 804 |
| TasI | AATT | 7 cut(s) | 32, 104, 122, 159, 231, 402, 411 |
| TatI | WGTACW | 1 cut(s) | 164 |
| TauI | GCSGC | 2 cut(s) | 97, 623 |
| TfiI | GAWTC | 2 cut(s) | 450, 743 |
| Tru1I | TTAA | 1 cut(s) | 158 |
| Tru9I | TTAA | 1 cut(s) | 158 |
| TscAI | CASTG | 3 cut(s) | 63, 487, 758 |
| TseI | GCWGC | 1 cut(s) | 613 |
| TspDTI | ATGAA | 4 cut(s) | 447, 698, 783, 822 |
| TspGWI | ACGGA | 2 cut(s) | 189, 623 |
| TspMI | CCCGGG | 1 cut(s) | 576 |
| TspRI | CASTG | 3 cut(s) | 63, 487, 758 |
| VpaK11BI | GGWCC | 1 cut(s) | 210 |
| XapI | RAATTY | 2 cut(s) | 104, 411 |
| XmaI | CCCGGG | 1 cut(s) | 576 |
| XmnI | GAANNNNTTC | 1 cut(s) | 107 |
| XspI | CTAG | 3 cut(s) | 188, 297, 617 |
| ZrmI | AGTACT | 1 cut(s) | 166 |
| Zsp2I | ATGCAT | 1 cut(s) | 274 |