Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 118, 164, 194, 783 |
| AclWI | GGATC | 5 cut(s) | 10, 23, 45, 185, 810 |
| AcoI | YGGCCR | 1 cut(s) | 298 |
| AcsI | RAATTY | 1 cut(s) | 359 |
| AcuI | CTGAAG | 1 cut(s) | 134 |
| AcyI | GRCGYC | 2 cut(s) | 326, 753 |
| AfaI | GTAC | 1 cut(s) | 736 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 68 |
| AgsI | TTSAA | 2 cut(s) | 367, 461 |
| AjiI | CACGTC | 1 cut(s) | 533 |
| AluBI | AGCT | 2 cut(s) | 9, 613 |
| AluI | AGCT | 2 cut(s) | 9, 613 |
| Alw26I | GTCTC | 1 cut(s) | 744 |
| AlwI | GGATC | 5 cut(s) | 10, 23, 45, 185, 810 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 722 |
| AoxI | GGCC | 4 cut(s) | 298, 558, 671, 810 |
| ApoI | RAATTY | 1 cut(s) | 359 |
| AspLEI | GCGC | 1 cut(s) | 706 |
| AspS9I | GGNCC | 1 cut(s) | 141 |
| AsuHPI | GGTGA | 1 cut(s) | 424 |
| AvaII | GGWCC | 1 cut(s) | 141 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 239, 272 |
| BalI | TGGCCA | 1 cut(s) | 300 |
| BamHI | GGATCC | 1 cut(s) | 15 |
| BccI | CCATC | 3 cut(s) | 173, 268, 684 |
| BcoDI | GTCTC | 1 cut(s) | 744 |
| BfaI | CTAG | 6 cut(s) | 65, 161, 260, 353, 528, 738 |
| BglII | AGATCT | 1 cut(s) | 109 |
| Bme18I | GGWCC | 1 cut(s) | 141 |
| BmgBI | CACGTC | 1 cut(s) | 533 |
| BmgT120I | GGNCC | 1 cut(s) | 141 |
| BmiI | GGNNCC | 1 cut(s) | 17 |
| BpmI | CTGGAG | 2 cut(s) | 534, 807 |
| BsaHI | GRCGYC | 2 cut(s) | 326, 753 |
| BsaJI | CCNNGG | 2 cut(s) | 137, 251 |
| BsaWI | WCCGGW | 1 cut(s) | 34 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 584, 614, 758, 788 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 68 |
| Bse118I | RCCGGY | 1 cut(s) | 755 |
| Bse1I | ACTGG | 3 cut(s) | 517, 609, 691 |
| Bse3DI | GCAATG | 1 cut(s) | 798 |
| BseDI | CCNNGG | 2 cut(s) | 137, 251 |
| BseGI | GGATG | 4 cut(s) | 276, 341, 695, 829 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 68 |
| BseMI | GCAATG | 1 cut(s) | 798 |
| BseMII | CTCAG | 4 cut(s) | 641, 689, 735, 830 |
| BseNI | ACTGG | 3 cut(s) | 517, 609, 691 |
| BseRI | GAGGAG | 4 cut(s) | 84, 278, 563, 608 |
| BseYI | CCCAGC | 1 cut(s) | 539 |
| BshFI | GGCC | 4 cut(s) | 300, 560, 673, 812 |
| BsiSI | CCGG | 3 cut(s) | 35, 707, 756 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 68 |
| BsmAI | GTCTC | 1 cut(s) | 744 |
| BsmBI | CGTCTC | 1 cut(s) | 744 |
| BsmI | GAATGC | 1 cut(s) | 448 |
| BsnI | GGCC | 4 cut(s) | 300, 560, 673, 812 |
| Bsp143I | GATC | 7 cut(s) | 15, 37, 109, 190, 414, 454, 802 |
| BspACI | CCGC | 4 cut(s) | 118, 164, 194, 783 |
| BspANI | GGCC | 4 cut(s) | 300, 560, 673, 812 |
| BspCNI | CTCAG | 4 cut(s) | 640, 688, 736, 829 |
| BspLI | GGNNCC | 1 cut(s) | 17 |
| BspPI | GGATC | 5 cut(s) | 10, 23, 45, 185, 810 |
| BsrDI | GCAATG | 1 cut(s) | 798 |
| BsrFI | RCCGGY | 1 cut(s) | 755 |
| BsrI | ACTGG | 3 cut(s) | 517, 609, 691 |
| BssAI | RCCGGY | 1 cut(s) | 755 |
| BssECI | CCNNGG | 2 cut(s) | 137, 251 |
| BssMI | GATC | 7 cut(s) | 15, 37, 109, 190, 414, 454, 802 |
| BssNI | GRCGYC | 2 cut(s) | 326, 753 |
| BstACI | GRCGYC | 2 cut(s) | 326, 753 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 443 |
| BstC8I | GCNNGC | 5 cut(s) | 58, 120, 280, 558, 757 |
| BstDEI | CTNAG | 5 cut(s) | 330, 627, 675, 744, 816 |
| BstDSI | CCRYGG | 1 cut(s) | 137 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 66 |
| BstF5I | GGATG | 4 cut(s) | 276, 341, 695, 829 |
| BstHHI | GCGC | 1 cut(s) | 706 |
| BstKTI | GATC | 7 cut(s) | 18, 40, 112, 193, 417, 457, 805 |
| BstMAI | GTCTC | 1 cut(s) | 744 |
| BstMBI | GATC | 7 cut(s) | 15, 37, 109, 190, 414, 454, 802 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 443, 619 |
| BstX2I | RGATCY | 4 cut(s) | 15, 109, 190, 802 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 308 |
| BstYI | RGATCY | 4 cut(s) | 15, 109, 190, 802 |
| BsuRI | GGCC | 4 cut(s) | 300, 560, 673, 812 |
| BtgI | CCRYGG | 1 cut(s) | 137 |
| BtrI | CACGTC | 1 cut(s) | 533 |
| BtsCI | GGATG | 4 cut(s) | 276, 341, 695, 829 |
| Cac8I | GCNNGC | 5 cut(s) | 58, 120, 280, 558, 757 |
| CaiI | CAGNNNCTG | 1 cut(s) | 722 |
| CfoI | GCGC | 1 cut(s) | 706 |
| Cfr10I | RCCGGY | 1 cut(s) | 755 |
| Cfr13I | GGNCC | 1 cut(s) | 141 |
| CseI | GACGC | 2 cut(s) | 315, 761 |
| Csp6I | GTAC | 1 cut(s) | 735 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 780, 815 |
| CviAII | CATG | 2 cut(s) | 214, 770 |
| CviQI | GTAC | 1 cut(s) | 735 |
| DdeI | CTNAG | 5 cut(s) | 330, 627, 675, 744, 816 |
| DpnI | GATC | 7 cut(s) | 17, 39, 111, 192, 416, 456, 804 |
| DpnII | GATC | 7 cut(s) | 15, 37, 109, 190, 414, 454, 802 |
| DraI | TTTAAA | 2 cut(s) | 97, 421 |
| EaeI | YGGCCR | 1 cut(s) | 298 |
| Eco147I | AGGCCT | 2 cut(s) | 560, 673 |
| Eco47I | GGWCC | 1 cut(s) | 141 |
| Eco57I | CTGAAG | 1 cut(s) | 134 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 66 |
| EcoRI | GAATTC | 1 cut(s) | 359 |
| Esp3I | CGTCTC | 1 cut(s) | 744 |
| FaeI | CATG | 2 cut(s) | 217, 773 |
| FaiI | YATR | 7 cut(s) | 102, 215, 465, 510, 698, 771, 835 |
| FatI | CATG | 2 cut(s) | 213, 769 |
| FauI | CCCGC | 1 cut(s) | 111 |
| FokI | GGATG | 3 cut(s) | 283, 348, 702 |
| FspBI | CTAG | 6 cut(s) | 65, 161, 260, 353, 528, 738 |
| GlaI | GCGC | 1 cut(s) | 705 |
| GsaI | CCCAGC | 1 cut(s) | 543 |
| GsuI | CTGGAG | 2 cut(s) | 534, 807 |
| HaeIII | GGCC | 4 cut(s) | 300, 560, 673, 812 |
| HapII | CCGG | 3 cut(s) | 35, 707, 756 |
| HgaI | GACGC | 2 cut(s) | 315, 761 |
| HhaI | GCGC | 1 cut(s) | 706 |
| Hin1I | GRCGYC | 2 cut(s) | 326, 753 |
| Hin1II | CATG | 2 cut(s) | 217, 773 |
| Hin6I | GCGC | 1 cut(s) | 704 |
| HinP1I | GCGC | 1 cut(s) | 704 |
| HincII | GTYRAC | 1 cut(s) | 549 |
| HindII | GTYRAC | 1 cut(s) | 549 |
| HindIII | AAGCTT | 1 cut(s) | 7 |
| HinfI | GANTC | 2 cut(s) | 229, 566 |
| HpaI | GTTAAC | 1 cut(s) | 549 |
| HpaII | CCGG | 3 cut(s) | 35, 707, 756 |
| HphI | GGTGA | 1 cut(s) | 424 |
| Hpy166II | GTNNAC | 1 cut(s) | 549 |
| Hpy188I | TCNGA | 7 cut(s) | 28, 42, 114, 234, 617, 678, 766 |
| Hpy188III | TCNNGA | 6 cut(s) | 226, 260, 364, 458, 629, 818 |
| Hpy8I | GTNNAC | 1 cut(s) | 549 |
| HpyAV | CCTTC | 1 cut(s) | 583 |
| HpyCH4IV | ACGT | 1 cut(s) | 532 |
| HpyCH4V | TGCA | 2 cut(s) | 217, 294 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 443, 619 |
| HpyF3I | CTNAG | 5 cut(s) | 330, 627, 675, 744, 816 |
| HpySE526I | ACGT | 1 cut(s) | 532 |
| Hsp92I | GRCGYC | 2 cut(s) | 326, 753 |
| Hsp92II | CATG | 2 cut(s) | 217, 773 |
| HspAI | GCGC | 1 cut(s) | 704 |
| KroI | GCCGGC | 1 cut(s) | 755 |
| KroNI | GCCGGC | 1 cut(s) | 757 |
| KspAI | GTTAAC | 1 cut(s) | 549 |
| Kzo9I | GATC | 7 cut(s) | 15, 37, 109, 190, 414, 454, 802 |
| LmnI | GCTCC | 5 cut(s) | 553, 618, 631, 766, 788 |
| MaeI | CTAG | 6 cut(s) | 65, 161, 260, 353, 528, 738 |
| MaeII | ACGT | 1 cut(s) | 532 |
| MaeIII | GTNAC | 2 cut(s) | 172, 600 |
| MalI | GATC | 7 cut(s) | 17, 39, 111, 192, 416, 456, 804 |
| MboI | GATC | 7 cut(s) | 15, 37, 109, 190, 414, 454, 802 |
| MboII | GAAGA | 4 cut(s) | 200, 481, 598, 691 |
| MflI | RGATCY | 4 cut(s) | 15, 109, 190, 802 |
| MlsI | TGGCCA | 1 cut(s) | 300 |
| MluCI | AATT | 5 cut(s) | 48, 359, 369, 407, 710 |
| MluNI | TGGCCA | 1 cut(s) | 300 |
| MmeI | TCCRAC | 1 cut(s) | 744 |
| Mox20I | TGGCCA | 1 cut(s) | 300 |
| MreI | CGCCGGCG | 1 cut(s) | 755 |
| MroNI | GCCGGC | 1 cut(s) | 755 |
| MscI | TGGCCA | 1 cut(s) | 300 |
| MseI | TTAA | 3 cut(s) | 96, 420, 548 |
| Msp20I | TGGCCA | 1 cut(s) | 300 |
| MspA1I | CMGCKG | 2 cut(s) | 196, 785 |
| MspI | CCGG | 3 cut(s) | 35, 707, 756 |
| Mva1269I | GAATGC | 1 cut(s) | 448 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 443, 619 |
| NaeI | GCCGGC | 1 cut(s) | 757 |
| NdeII | GATC | 7 cut(s) | 15, 37, 109, 190, 414, 454, 802 |
| NgoMIV | GCCGGC | 1 cut(s) | 755 |
| NlaIII | CATG | 2 cut(s) | 217, 773 |
| NlaIV | GGNNCC | 1 cut(s) | 17 |
| NmeAIII | GCCGAG | 1 cut(s) | 607 |
| PceI | AGGCCT | 2 cut(s) | 560, 673 |
| PctI | GAATGC | 1 cut(s) | 448 |
| PdiI | GCCGGC | 1 cut(s) | 757 |
| PfeI | GAWTC | 2 cut(s) | 229, 566 |
| PspFI | CCCAGC | 1 cut(s) | 539 |
| PspN4I | GGNNCC | 1 cut(s) | 17 |
| PspPI | GGNCC | 1 cut(s) | 141 |
| PstNI | CAGNNNCTG | 1 cut(s) | 722 |
| PsuI | RGATCY | 4 cut(s) | 15, 109, 190, 802 |
| RsaI | GTAC | 1 cut(s) | 736 |
| RsaNI | GTAC | 1 cut(s) | 735 |
| SaqAI | TTAA | 3 cut(s) | 96, 420, 548 |
| Sau3AI | GATC | 7 cut(s) | 15, 37, 109, 190, 414, 454, 802 |
| Sau96I | GGNCC | 1 cut(s) | 141 |
| SetI | ASST | 8 cut(s) | 11, 257, 293, 427, 535, 615, 662, 801 |
| SgrAI | CRCCGGYG | 1 cut(s) | 755 |
| SinI | GGWCC | 1 cut(s) | 141 |
| Sse9I | AATT | 5 cut(s) | 48, 359, 369, 407, 710 |
| SseBI | AGGCCT | 2 cut(s) | 560, 673 |
| SsiI | CCGC | 4 cut(s) | 118, 164, 194, 783 |
| SspMI | CTAG | 6 cut(s) | 65, 161, 260, 353, 528, 738 |
| StuI | AGGCCT | 2 cut(s) | 560, 673 |
| TaiI | ACGT | 1 cut(s) | 535 |
| TaqI | TCGA | 1 cut(s) | 390 |
| TasI | AATT | 5 cut(s) | 48, 359, 369, 407, 710 |
| TfiI | GAWTC | 2 cut(s) | 229, 566 |
| Tru1I | TTAA | 3 cut(s) | 96, 420, 548 |
| Tru9I | TTAA | 3 cut(s) | 96, 420, 548 |
| TspDTI | ATGAA | 2 cut(s) | 17, 117 |
| TspGWI | ACGGA | 1 cut(s) | 566 |
| VpaK11BI | GGWCC | 1 cut(s) | 141 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 66 |
| XapI | RAATTY | 1 cut(s) | 359 |
| XbaI | TCTAGA | 1 cut(s) | 259 |
| XspI | CTAG | 6 cut(s) | 65, 161, 260, 353, 528, 738 |