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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 514 |
| Acc36I | ACCTGC | 1 cut(s) | 514 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 92 |
| AclI | AACGTT | 1 cut(s) | 621 |
| AclWI | GGATC | 5 cut(s) | 45, 58, 66, 79, 146 |
| AcuI | CTGAAG | 1 cut(s) | 59 |
| AfaI | GTAC | 1 cut(s) | 594 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 92, 161 |
| AflII | CTTAAG | 1 cut(s) | 178 |
| AflIII | ACRYGT | 1 cut(s) | 451 |
| AgsI | TTSAA | 1 cut(s) | 398 |
| AluBI | AGCT | 2 cut(s) | 37, 265 |
| AluI | AGCT | 2 cut(s) | 37, 265 |
| AlwI | GGATC | 5 cut(s) | 45, 58, 66, 79, 146 |
| AoxI | GGCC | 1 cut(s) | 356 |
| AseI | ATTAAT | 2 cut(s) | 57, 78 |
| AspS9I | GGNCC | 3 cut(s) | 62, 83, 356 |
| AsuHPI | GGTGA | 4 cut(s) | 143, 179, 443, 563 |
| AvaII | GGWCC | 2 cut(s) | 62, 83 |
| BamHI | GGATCC | 2 cut(s) | 50, 71 |
| BanII | GRGCYC | 1 cut(s) | 148 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 103, 135 |
| BbsI | GAAGAC | 1 cut(s) | 20 |
| BccI | CCATC | 2 cut(s) | 86, 422 |
| BfaI | CTAG | 1 cut(s) | 273 |
| BfrI | CTTAAG | 1 cut(s) | 178 |
| BfuAI | ACCTGC | 1 cut(s) | 514 |
| Bme18I | GGWCC | 2 cut(s) | 62, 83 |
| BmgT120I | GGNCC | 3 cut(s) | 62, 83, 356 |
| BmiI | GGNNCC | 3 cut(s) | 52, 73, 147 |
| BpiI | GAAGAC | 1 cut(s) | 20 |
| BpmI | CTGGAG | 1 cut(s) | 132 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 92, 161 |
| Bse1I | ACTGG | 1 cut(s) | 149 |
| BseGI | GGATG | 1 cut(s) | 433 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 92, 161 |
| BseNI | ACTGG | 1 cut(s) | 149 |
| BseRI | GAGGAG | 1 cut(s) | 326 |
| BsgI | GTGCAG | 1 cut(s) | 458 |
| BshFI | GGCC | 1 cut(s) | 358 |
| BsiSI | CCGG | 1 cut(s) | 155 |
| BslFI | GGGAC | 1 cut(s) | 614 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 92, 161 |
| BsmFI | GGGAC | 1 cut(s) | 614 |
| BsmI | GAATGC | 1 cut(s) | 232 |
| BsnI | GGCC | 1 cut(s) | 358 |
| Bsp1286I | GDGCHC | 1 cut(s) | 148 |
| Bsp143I | GATC | 5 cut(s) | 50, 71, 133, 138, 159 |
| BspANI | GGCC | 1 cut(s) | 358 |
| BspLI | GGNNCC | 3 cut(s) | 52, 73, 147 |
| BspMI | ACCTGC | 1 cut(s) | 514 |
| BspPI | GGATC | 5 cut(s) | 45, 58, 66, 79, 146 |
| BspTI | CTTAAG | 1 cut(s) | 178 |
| BsrI | ACTGG | 1 cut(s) | 149 |
| BssMI | GATC | 5 cut(s) | 50, 71, 133, 138, 159 |
| Bst4CI | ACNGT | 1 cut(s) | 173 |
| BstAFI | CTTAAG | 1 cut(s) | 178 |
| BstC8I | GCNNGC | 1 cut(s) | 581 |
| BstF5I | GGATG | 1 cut(s) | 433 |
| BstKTI | GATC | 5 cut(s) | 53, 74, 136, 141, 162 |
| BstMBI | GATC | 5 cut(s) | 50, 71, 133, 138, 159 |
| BstNSI | RCATGY | 6 cut(s) | 455, 463, 563, 583, 607, 631 |
| BstV2I | GAAGAC | 1 cut(s) | 20 |
| BstX2I | RGATCY | 2 cut(s) | 50, 71 |
| BstYI | RGATCY | 2 cut(s) | 50, 71 |
| BsuRI | GGCC | 1 cut(s) | 358 |
| BtsCI | GGATG | 1 cut(s) | 433 |
| BtsIMutI | CAGTG | 3 cut(s) | 156, 178, 341 |
| BveI | ACCTGC | 1 cut(s) | 514 |
| Cac8I | GCNNGC | 1 cut(s) | 581 |
| Cfr13I | GGNCC | 3 cut(s) | 62, 83, 356 |
| CseI | GACGC | 1 cut(s) | 357 |
| Csp6I | GTAC | 1 cut(s) | 593 |
| CviJI | RGCY | 8 cut(s) | 37, 146, 177, 204, 244, 265, 358, 540 |
| CviKI_1 | RGCY | 8 cut(s) | 37, 146, 177, 204, 244, 265, 358, 540 |
| CviQI | GTAC | 1 cut(s) | 593 |
| DpnI | GATC | 5 cut(s) | 52, 73, 135, 140, 161 |
| DpnII | GATC | 5 cut(s) | 50, 71, 133, 138, 159 |
| DraI | TTTAAA | 2 cut(s) | 282, 423 |
| Eco24I | GRGCYC | 1 cut(s) | 148 |
| Eco47I | GGWCC | 2 cut(s) | 62, 83 |
| Eco57I | CTGAAG | 1 cut(s) | 59 |
| EcoT22I | ATGCAT | 3 cut(s) | 561, 585, 609 |
| EcoT38I | GRGCYC | 1 cut(s) | 148 |
| FaqI | GGGAC | 1 cut(s) | 614 |
| FokI | GGATG | 1 cut(s) | 440 |
| FriOI | GRGCYC | 1 cut(s) | 148 |
| FspBI | CTAG | 1 cut(s) | 273 |
| GsuI | CTGGAG | 1 cut(s) | 132 |
| HaeIII | GGCC | 1 cut(s) | 358 |
| HapII | CCGG | 1 cut(s) | 155 |
| HgaI | GACGC | 1 cut(s) | 357 |
| HincII | GTYRAC | 1 cut(s) | 625 |
| HindII | GTYRAC | 1 cut(s) | 625 |
| HpaII | CCGG | 1 cut(s) | 155 |
| HphI | GGTGA | 4 cut(s) | 143, 179, 443, 563 |
| Hpy166II | GTNNAC | 5 cut(s) | 213, 383, 457, 529, 625 |
| Hpy188I | TCNGA | 1 cut(s) | 138 |
| Hpy188III | TCNNGA | 4 cut(s) | 65, 86, 372, 395 |
| Hpy8I | GTNNAC | 5 cut(s) | 213, 383, 457, 529, 625 |
| HpyAV | CCTTC | 3 cut(s) | 25, 34, 40 |
| HpyCH4III | ACNGT | 1 cut(s) | 173 |
| HpyCH4IV | ACGT | 2 cut(s) | 215, 621 |
| HpyCH4V | TGCA | 6 cut(s) | 439, 484, 511, 559, 583, 607 |
| HpySE526I | ACGT | 2 cut(s) | 215, 621 |
| Kzo9I | GATC | 5 cut(s) | 50, 71, 133, 138, 159 |
| LmnI | GCTCC | 3 cut(s) | 34, 151, 262 |
| MaeI | CTAG | 1 cut(s) | 273 |
| MaeII | ACGT | 2 cut(s) | 215, 621 |
| MaeIII | GTNAC | 1 cut(s) | 167 |
| MalI | GATC | 5 cut(s) | 52, 73, 135, 140, 161 |
| MboI | GATC | 5 cut(s) | 50, 71, 133, 138, 159 |
| MboII | GAAGA | 4 cut(s) | 25, 123, 328, 505 |
| MfeI | CAATTG | 1 cut(s) | 123 |
| MflI | RGATCY | 2 cut(s) | 50, 71 |
| MhlI | GDGCHC | 1 cut(s) | 148 |
| MluCI | AATT | 2 cut(s) | 123, 390 |
| MnlI | CCTC | 7 cut(s) | 12, 61, 234, 304, 369, 427, 469 |
| Mph1103I | ATGCAT | 3 cut(s) | 561, 585, 609 |
| MseI | TTAA | 7 cut(s) | 57, 78, 179, 225, 281, 422, 542 |
| MspCI | CTTAAG | 1 cut(s) | 178 |
| MspI | CCGG | 1 cut(s) | 155 |
| MunI | CAATTG | 1 cut(s) | 123 |
| Mva1269I | GAATGC | 1 cut(s) | 232 |
| NdeII | GATC | 5 cut(s) | 50, 71, 133, 138, 159 |
| NlaIV | GGNNCC | 3 cut(s) | 52, 73, 147 |
| NmuCI | GTSAC | 1 cut(s) | 167 |
| NsiI | ATGCAT | 3 cut(s) | 561, 585, 609 |
| NspI | RCATGY | 6 cut(s) | 455, 463, 563, 583, 607, 631 |
| PaeI | GCATGC | 1 cut(s) | 583 |
| PaqCI | CACCTGC | 1 cut(s) | 514 |
| PciI | ACATGT | 1 cut(s) | 451 |
| PctI | GAATGC | 1 cut(s) | 232 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 92 |
| PscI | ACATGT | 1 cut(s) | 451 |
| PshBI | ATTAAT | 2 cut(s) | 57, 78 |
| Psp1406I | AACGTT | 1 cut(s) | 621 |
| PspN4I | GGNNCC | 3 cut(s) | 52, 73, 147 |
| PspPI | GGNCC | 3 cut(s) | 62, 83, 356 |
| PsuI | RGATCY | 2 cut(s) | 50, 71 |
| RsaI | GTAC | 1 cut(s) | 594 |
| RsaNI | GTAC | 1 cut(s) | 593 |
| SaqAI | TTAA | 7 cut(s) | 57, 78, 179, 225, 281, 422, 542 |
| Sau3AI | GATC | 5 cut(s) | 50, 71, 133, 138, 159 |
| Sau96I | GGNCC | 3 cut(s) | 62, 83, 356 |
| SduI | GDGCHC | 1 cut(s) | 148 |
| SinI | GGWCC | 2 cut(s) | 62, 83 |
| SmlI | CTYRAG | 1 cut(s) | 178 |
| SmoI | CTYRAG | 1 cut(s) | 178 |
| SphI | GCATGC | 1 cut(s) | 583 |
| Sse9I | AATT | 2 cut(s) | 123, 390 |
| SspMI | CTAG | 1 cut(s) | 273 |
| TaaI | ACNGT | 1 cut(s) | 173 |
| TaiI | ACGT | 2 cut(s) | 218, 624 |
| TasI | AATT | 2 cut(s) | 123, 390 |
| Tru1I | TTAA | 7 cut(s) | 57, 78, 179, 225, 281, 422, 542 |
| Tru9I | TTAA | 7 cut(s) | 57, 78, 179, 225, 281, 422, 542 |
| TscAI | CASTG | 3 cut(s) | 156, 178, 348 |
| TseFI | GTSAC | 1 cut(s) | 167 |
| Tsp45I | GTSAC | 1 cut(s) | 167 |
| TspDTI | ATGAA | 2 cut(s) | 26, 119 |
| TspGWI | ACGGA | 1 cut(s) | 338 |
| TspRI | CASTG | 3 cut(s) | 156, 178, 348 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 92 |
| Vha464I | CTTAAG | 1 cut(s) | 178 |
| VpaK11BI | GGWCC | 2 cut(s) | 62, 83 |
| VspI | ATTAAT | 2 cut(s) | 57, 78 |
| XceI | RCATGY | 6 cut(s) | 455, 463, 563, 583, 607, 631 |
| XspI | CTAG | 1 cut(s) | 273 |
| Zsp2I | ATGCAT | 3 cut(s) | 561, 585, 609 |