Rh2DG073700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000022
Physical Location & Seq
Forward (+)
5732282 .. 5734174
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG073700.1

Sequence Viewer

Length: 1617 bp
ATGGAAGAGGCTTTAGTGGATCTGACGAAGCGCATGGCCATTGAAGATGATGAGGACCTGAACGTGATCCAACTTGAGGATCCAAAGGAGGTAGTTGATCGAAAGTTTTGGTTGATTGGTAAACTGTTGACAAACAAAACTTTCTGTTTTAAAGCGCTGAAAAGCACTATGAGACGTCTTTGGTCATTGAAGGAGGAGCTTACTATATTTCAATGGGAAGATTCAGATAGAATTCTCTTCTCATTTGGATCTGATGCGGATCGAAGGAAAGTAATGAAGGGGAGTCCGTGGACTTTTGACCATGCGCTGCTGCTACTTACTGCATCAGATGGAATGGTGGATCCAAAATCTGTTCCTCTTGATACCCAAGCTTTTTGGATTCGAGTTCGAGGTATTAAACCTGCGTTCATGACGCGTAAGTTGGCGGAACGCATAGGGAGACAGTTGGGAACCTTTTATCCGGTAGGGGAGGGGTTCGGAGAAGATGGAAGTGGAAGATTTTTACGAATTCGCGTTGGATTGGAGGTGTCAAAACCGCTGCAGAGGTGGATAAAGATCTCTTTGGCCATCGGCTTGTTGCCAGAGAAGTTTCAGTTGGAGTATGAACATCTGCCTTATTTTTGTTGCTATTGTGGCCGGTTGAACCATGTGAGCCCGGATTGTGACTTGCATAAAGATGGGGTGATCACGGAGGCGAGGTTTGGCAGGTGGAAAACACTTGCCAAAGATGTTTTCTCGATCGATCCAGAGGGGCAGCTCCATGGAAAACGATTCGGGTTGTTTCCTAAGCCCAATGGCTGGTCCATGAGCATTCCTGGGAATGAGCTTCCAATTGCTGGGGCGACTCGGTCAAGACTGGATTTTGAAGCCGCCGGGGAGAAAGACACGGAAGCGATGGAAGTGGATGGGGAACCTCAGGACTGCTCGGTCCTTCCTCCGATCAAGCGGCGGCGGAGATTACCAGCTGACGTGGATCCTCAAGCAATTCTTTATACAAGTTTGAGAGAATCACGGGATGAAACAAGGGTGGATAAGCTGAGATTGAATGAGCGAGATGGCAGGAGTCAACCCCAAGATCGTTTCGATTTAATTGTGGGGGCTACCAATTTGAGCGGGAAGGAATCAAATGGAAAAAAGGCACACGATAAGCATGCGCTTACTGCTGAACCTGCGCAATTGGGTCACGGTCCCAACTCGTTCCAGGCCCAGGTTTCAAGTTCGTCTGCTGGCCCAACTATTAAACACAAAAATCTATCTTCTGGGAGATGCGACTTAATCCCTAACACTGAGTCCACTTTGACTGGTGTGAACTCTCTTCCACTCAAAGAGGGAAAGTTTGATTCCGGGGAGGGAATTAGTGCAGGAACAAGTGGGGATGGGAGGAGGACAACTAGAGGTCGAGGTAGAGGTGGAAAGGGAGGCAGAGGTAATCGCAGAGGGAGTTCCGACAATGGGGAAGATAGAGTGCAGGAGGGATCTGGTTTTCATGGACAGATGTCGGAATCTGAGAAGCCATCCATGTCTGGCCCACTTCCAGAAGCTGCATCAGAGTCAGCTGACAAAGGAAAAGTTGTTTACAGACGGCGAGGTTTTCAGGTTTTGGAGGTTGTAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

538

Amino Acids

59.8

Weight (kDa)

8.66

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 35 - 107 2.2e-09 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 176 - 222 1e-05 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 696
AasI GACNNNNNNGTC 1 cut(s) 926
AatII GACGTC 1 cut(s) 178
Acc16I TGCGCA 1 cut(s) 1173
Acc36I ACCTGC 3 cut(s) 409, 696, 1177
AccB7I CCANNNNNTGG 2 cut(s) 798, 836
AccBSI CCGCTC 1 cut(s) 1113
AccII CGCG 2 cut(s) 415, 513
AciI CCGC 8 cut(s) 257, 425, 536, 870, 946, 949, 952, 1113
AcoI YGGCCR 3 cut(s) 36, 564, 634
AcsI RAATTY 2 cut(s) 231, 507
AcyI GRCGYC 1 cut(s) 175
AfeI AGCGCT 1 cut(s) 156
AfiI CCNNNNNNNGG 5 cut(s) 76, 798, 836, 1207, 1452
AflIII ACRYGT 1 cut(s) 413
AgsI TTSAA 7 cut(s) 44, 190, 212, 643, 866, 1045, 1215
AjiI CACGTC 1 cut(s) 970
AjnI CCWGG 3 cut(s) 814, 1200, 1206
AjuI GAANNNNNNNTTGG 4 cut(s) 578, 610, 716, 748
AloI GAACNNNNNNTCC 2 cut(s) 442, 474
AluBI AGCT 8 cut(s) 199, 371, 757, 826, 965, 1036, 1541, 1556
AluI AGCT 8 cut(s) 199, 371, 757, 826, 965, 1036, 1541, 1556
Alw26I GTCTC 2 cut(s) 166, 433
AlwNI CAGNNNCTG 1 cut(s) 1541
Aor51HI AGCGCT 1 cut(s) 156
AoxI GGCC 6 cut(s) 36, 564, 634, 1203, 1228, 1525
ApeKI GCWGC 5 cut(s) 307, 310, 538, 754, 1541
ApoI RAATTY 2 cut(s) 231, 507
AspLEI GCGC 5 cut(s) 33, 157, 307, 1156, 1174
AspS9I GGNCC 7 cut(s) 55, 801, 928, 1187, 1204, 1229, 1526
AsuC2I CCSGG 3 cut(s) 656, 874, 1345
AsuHPI GGTGA 1 cut(s) 694
AvaII GGWCC 4 cut(s) 55, 801, 928, 1187
AxyI CCTNAGG 1 cut(s) 915
BalI TGGCCA 2 cut(s) 38, 566
BamHI GGATCC 3 cut(s) 79, 340, 973
BanII GRGCYC 1 cut(s) 656
BbvI GCAGC 5 cut(s) 294, 297, 525, 766, 1528
BccI CCATC 9 cut(s) 323, 479, 575, 671, 889, 899, 1049, 1370, 1522
BceAI ACGGC 1 cut(s) 1598
BcgI CGANNNNNNTGC 2 cut(s) 1133, 1167
BciT130I CCWGG 3 cut(s) 816, 1202, 1208
BclI TGATCA 1 cut(s) 684
BcnI CCSGG 3 cut(s) 656, 874, 1345
BcoDI GTCTC 2 cut(s) 166, 433
BfaI CTAG 1 cut(s) 1392
BfmI CTRYAG 1 cut(s) 539
BfoI RGCGCY 1 cut(s) 158
BfuAI ACCTGC 3 cut(s) 409, 696, 1177
BglII AGATCT 1 cut(s) 555
BisI GCNGC 8 cut(s) 308, 311, 539, 755, 870, 947, 950, 1542
BlsI GCNGC 8 cut(s) 309, 312, 540, 756, 871, 948, 951, 1543
Bme1390I CCNGG 6 cut(s) 656, 816, 874, 1202, 1208, 1345
Bme18I GGWCC 4 cut(s) 55, 801, 928, 1187
BmgBI CACGTC 1 cut(s) 970
BmgT120I GGNCC 7 cut(s) 55, 801, 928, 1187, 1204, 1229, 1526
BmiI GGNNCC 6 cut(s) 81, 342, 451, 912, 975, 1189
BmrFI CCNGG 6 cut(s) 656, 816, 874, 1202, 1208, 1345
BmsI GCATC 4 cut(s) 244, 332, 1256, 1553
BoxI GACNNNNGTC 1 cut(s) 1495
Bpu10I CCTNAGC 1 cut(s) 786
BpuEI CTTGAG 2 cut(s) 95, 963
BpuMI CCSGG 3 cut(s) 656, 874, 1345
Bsa29I ATCGAT 1 cut(s) 741
BsaBI GATNNNNATC 2 cut(s) 258, 554
BsaHI GRCGYC 1 cut(s) 175
BsaJI CCNNGG 6 cut(s) 287, 760, 815, 873, 1206, 1344
BsaWI WCCGGW 1 cut(s) 460
BsaXI ACNNNNNCTCC 2 cut(s) 683, 713
Bsc4I CCNNNNNNNGG 5 cut(s) 76, 798, 836, 1207, 1452
Bse118I RCCGGY 1 cut(s) 636
Bse1I ACTGG 2 cut(s) 861, 1306
Bse21I CCTNAGG 1 cut(s) 915
Bse8I GATNNNNATC 2 cut(s) 258, 554
BseBI CCWGG 3 cut(s) 816, 1202, 1208
BseCI ATCGAT 1 cut(s) 741
BseDI CCNNGG 6 cut(s) 287, 760, 815, 873, 1206, 1344
BseGI GGATG 4 cut(s) 910, 1021, 1381, 1514
BseJI GATNNNNATC 2 cut(s) 258, 554
BseLI CCNNNNNNNGG 5 cut(s) 76, 798, 836, 1207, 1452
BseMII CTCAG 4 cut(s) 929, 1028, 1278, 1497
BseNI ACTGG 2 cut(s) 861, 1306
BseRI GAGGAG 2 cut(s) 209, 1396
BseXI GCAGC 5 cut(s) 294, 297, 525, 766, 1528
BseYI CCCAGC 1 cut(s) 836
BsgI GTGCAG 2 cut(s) 1380, 1487
Bsh1236I CGCG 2 cut(s) 415, 513
Bsh1285I CGRYCG 1 cut(s) 741
BshFI GGCC 6 cut(s) 38, 566, 636, 1205, 1230, 1527
BshVI ATCGAT 1 cut(s) 741
BsiEI CGRYCG 1 cut(s) 741
BsiSI CCGG 5 cut(s) 461, 637, 656, 873, 1344
BslFI GGGAC 1 cut(s) 1173
BslI CCNNNNNNNGG 5 cut(s) 76, 798, 836, 1207, 1452
BsmAI GTCTC 2 cut(s) 166, 433
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 1173
BsmI GAATGC 1 cut(s) 810
BsnI GGCC 6 cut(s) 38, 566, 636, 1205, 1230, 1527
Bsp1286I GDGCHC 1 cut(s) 656
Bsp19I CCATGG 1 cut(s) 760
BspACI CCGC 8 cut(s) 257, 425, 536, 870, 946, 949, 952, 1113
BspANI GGCC 6 cut(s) 38, 566, 636, 1205, 1230, 1527
BspCNI CTCAG 4 cut(s) 928, 1029, 1279, 1498
BspDI ATCGAT 1 cut(s) 741
BspFNI CGCG 2 cut(s) 415, 513
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 6 cut(s) 81, 342, 451, 912, 975, 1189
BspMAI CTGCAG 1 cut(s) 543
BspMI ACCTGC 3 cut(s) 409, 696, 1177
BsrBI CCGCTC 1 cut(s) 1113
BsrFI RCCGGY 1 cut(s) 636
BsrI ACTGG 2 cut(s) 861, 1306
BssAI RCCGGY 1 cut(s) 636
BssECI CCNNGG 6 cut(s) 287, 760, 815, 873, 1206, 1344
BssNI GRCGYC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 760
Bst2UI CCWGG 3 cut(s) 816, 1202, 1208
Bst4CI ACNGT 3 cut(s) 126, 444, 1187
Bst6I CTCTTC 2 cut(s) 242, 1320
BstACI GRCGYC 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 1152, 1228
BstDEI CTNAG 5 cut(s) 786, 915, 1037, 1287, 1506
BstDSI CCRYGG 2 cut(s) 287, 760
BstF5I GGATG 4 cut(s) 910, 1021, 1381, 1514
BstFNI CGCG 2 cut(s) 415, 513
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 5 cut(s) 33, 157, 307, 1156, 1174
BstMAI GTCTC 2 cut(s) 166, 433
BstMCI CGRYCG 1 cut(s) 741
BstMWI GCNNNNNNNGC 3 cut(s) 633, 1160, 1169
BstNI CCWGG 3 cut(s) 816, 1202, 1208
BstNSI RCATGY 1 cut(s) 1154
BstPAI GACNNNNGTC 1 cut(s) 1495
BstSCI CCNGG 6 cut(s) 654, 814, 872, 1200, 1206, 1343
BstSFI CTRYAG 1 cut(s) 539
BstUI CGCG 2 cut(s) 415, 513
BstV1I GCAGC 5 cut(s) 294, 297, 525, 766, 1528
BstX2I RGATCY 7 cut(s) 19, 79, 248, 340, 555, 973, 1475
BstYI RGATCY 7 cut(s) 19, 79, 248, 340, 555, 973, 1475
Bsu15I ATCGAT 1 cut(s) 741
Bsu36I CCTNAGG 1 cut(s) 915
BsuRI GGCC 6 cut(s) 38, 566, 636, 1205, 1230, 1527
BsuTUI ATCGAT 1 cut(s) 741
BtgI CCRYGG 2 cut(s) 287, 760
BtgZI GCGATG 1 cut(s) 908
BtrI CACGTC 1 cut(s) 970
BtsCI GGATG 4 cut(s) 910, 1021, 1381, 1514
BtsIMutI CAGTG 1 cut(s) 1284
BveI ACCTGC 3 cut(s) 409, 696, 1177
Cac8I GCNNGC 2 cut(s) 1152, 1228
CaiI CAGNNNCTG 1 cut(s) 1541
CciI TCATGA 1 cut(s) 408
CfoI GCGC 5 cut(s) 33, 157, 307, 1156, 1174
Cfr10I RCCGGY 1 cut(s) 636
Cfr13I GGNCC 7 cut(s) 55, 801, 928, 1187, 1204, 1229, 1526
ClaI ATCGAT 1 cut(s) 741
CseI GACGC 1 cut(s) 421
CviAII CATG 9 cut(s) 34, 302, 409, 647, 761, 805, 1151, 1487, 1519
DdeI CTNAG 5 cut(s) 786, 915, 1037, 1287, 1506
DraI TTTAAA 1 cut(s) 151
DrdI GACNNNNNNGTC 1 cut(s) 926
DseDI GACNNNNNNGTC 1 cut(s) 926
EaeI YGGCCR 3 cut(s) 36, 564, 634
Eam1104I CTCTTC 2 cut(s) 242, 1320
EarI CTCTTC 2 cut(s) 242, 1320
EciI GGCGGA 2 cut(s) 440, 967
Eco130I CCWWGG 1 cut(s) 760
Eco24I GRGCYC 1 cut(s) 656
Eco47I GGWCC 4 cut(s) 55, 801, 928, 1187
Eco47III AGCGCT 1 cut(s) 156
Eco81I CCTNAGG 1 cut(s) 915
EcoO109I RGGNCCY 1 cut(s) 55
EcoRI GAATTC 2 cut(s) 231, 507
EcoRII CCWGG 3 cut(s) 814, 1200, 1206
EcoT14I CCWWGG 1 cut(s) 760
EcoT38I GRGCYC 1 cut(s) 656
ErhI CCWWGG 1 cut(s) 760
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 9 cut(s) 37, 305, 412, 650, 764, 808, 1154, 1490, 1522
FalI AAGNNNNNCTT 2 cut(s) 972, 1004
FaqI GGGAC 1 cut(s) 1173
FatI CATG 9 cut(s) 33, 301, 408, 646, 760, 804, 1150, 1486, 1518
FauI CCCGC 1 cut(s) 1106
FbaI TGATCA 1 cut(s) 684
Fnu4HI GCNGC 8 cut(s) 308, 311, 539, 755, 870, 947, 950, 1542
FokI GGATG 4 cut(s) 917, 1028, 1388, 1501
FriOI GRGCYC 1 cut(s) 656
Fsp4HI GCNGC 8 cut(s) 308, 311, 539, 755, 870, 947, 950, 1542
FspBI CTAG 1 cut(s) 1392
FspI TGCGCA 1 cut(s) 1173
GlaI GCGC 5 cut(s) 32, 156, 306, 1155, 1173
GluI GCNGC 8 cut(s) 308, 311, 539, 755, 870, 947, 950, 1542
GsaI CCCAGC 1 cut(s) 840
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 6 cut(s) 38, 566, 636, 1205, 1230, 1527
HapII CCGG 5 cut(s) 461, 637, 656, 873, 1344
HgaI GACGC 1 cut(s) 421
HhaI GCGC 5 cut(s) 33, 157, 307, 1156, 1174
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 9 cut(s) 37, 305, 412, 650, 764, 808, 1154, 1490, 1522
Hin6I GCGC 5 cut(s) 31, 155, 305, 1154, 1172
HinP1I GCGC 5 cut(s) 31, 155, 305, 1154, 1172
HincII GTYRAC 2 cut(s) 129, 1067
HindII GTYRAC 2 cut(s) 129, 1067
HindIII AAGCTT 1 cut(s) 369
HpaII CCGG 5 cut(s) 461, 637, 656, 873, 1344
HphI GGTGA 1 cut(s) 694
Hpy166II GTNNAC 7 cut(s) 122, 129, 291, 1067, 1293, 1309, 1576
Hpy188III TCNNGA 7 cut(s) 359, 409, 736, 746, 852, 917, 1535
Hpy8I GTNNAC 7 cut(s) 122, 129, 291, 1067, 1293, 1309, 1576
HpyAV CCTTC 5 cut(s) 184, 258, 271, 941, 1111
HpyCH4III ACNGT 3 cut(s) 126, 444, 1187
HpyCH4IV ACGT 3 cut(s) 63, 175, 969
HpyCH4V TGCA 6 cut(s) 323, 541, 670, 1361, 1468, 1544
HpyF10VI GCNNNNNNNGC 3 cut(s) 633, 1160, 1169
HpyF3I CTNAG 5 cut(s) 786, 915, 1037, 1287, 1506
HpySE526I ACGT 3 cut(s) 63, 175, 969
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 9 cut(s) 37, 305, 412, 650, 764, 808, 1154, 1490, 1522
HspAI GCGC 5 cut(s) 31, 155, 305, 1154, 1172
Ksp22I TGATCA 1 cut(s) 684
LmnI GCTCC 2 cut(s) 196, 762
Lsp1109I GCAGC 5 cut(s) 294, 297, 525, 766, 1528
LweI GCATC 4 cut(s) 244, 332, 1256, 1553
MaeI CTAG 1 cut(s) 1392
MaeII ACGT 3 cut(s) 63, 175, 969
MaeIII GTNAC 2 cut(s) 662, 1181
MbiI CCGCTC 1 cut(s) 1113
MboII GAAGA 9 cut(s) 17, 56, 229, 230, 494, 507, 1248, 1307, 1469
MfeI CAATTG 2 cut(s) 831, 1175
MflI RGATCY 7 cut(s) 19, 79, 248, 340, 555, 973, 1475
MhlI GDGCHC 1 cut(s) 656
MlsI TGGCCA 2 cut(s) 38, 566
MluCI AATT 8 cut(s) 231, 507, 831, 984, 1089, 1105, 1175, 1353
MluI ACGCGT 1 cut(s) 413
MluNI TGGCCA 2 cut(s) 38, 566
MlyI GAGTC 5 cut(s) 292, 838, 1072, 1298, 1559
MmeI TCCRAC 5 cut(s) 94, 496, 576, 1470, 1479
Mox20I TGGCCA 2 cut(s) 38, 566
MscI TGGCCA 2 cut(s) 38, 566
MseI TTAA 5 cut(s) 150, 396, 1088, 1239, 1274
MslI CAYNNNNRTG 1 cut(s) 675
Msp20I TGGCCA 2 cut(s) 38, 566
MspA1I CMGCKG 3 cut(s) 538, 965, 1556
MspI CCGG 5 cut(s) 461, 637, 656, 873, 1344
MspR9I CCNGG 6 cut(s) 656, 816, 874, 1202, 1208, 1345
MunI CAATTG 2 cut(s) 831, 1175
Mva1269I GAATGC 1 cut(s) 810
MvaI CCWGG 3 cut(s) 816, 1202, 1208
MvnI CGCG 2 cut(s) 415, 513
MwoI GCNNNNNNNGC 3 cut(s) 633, 1160, 1169
NciI CCSGG 3 cut(s) 656, 874, 1345
NcoI CCATGG 1 cut(s) 760
NlaIII CATG 9 cut(s) 37, 305, 412, 650, 764, 808, 1154, 1490, 1522
NlaIV GGNNCC 6 cut(s) 81, 342, 451, 912, 975, 1189
NmuCI GTSAC 2 cut(s) 662, 1181
NsbI TGCGCA 1 cut(s) 1173
NspI RCATGY 1 cut(s) 1154
PaeI GCATGC 1 cut(s) 1154
PagI TCATGA 1 cut(s) 408
PaqCI CACCTGC 1 cut(s) 696
PctI GAATGC 1 cut(s) 810
PfeI GAWTC 7 cut(s) 221, 379, 771, 1007, 1121, 1340, 1502
PflFI GACNNNGTC 1 cut(s) 847
PflMI CCANNNNNTGG 2 cut(s) 798, 836
PkrI GCNGC 8 cut(s) 309, 312, 540, 756, 871, 948, 951, 1543
Ple19I CGATCG 1 cut(s) 741
PleI GAGTC 5 cut(s) 291, 838, 1071, 1297, 1558
PpsI GAGTC 5 cut(s) 291, 838, 1071, 1297, 1558
PpuMI RGGWCCY 1 cut(s) 55
PshAI GACNNNNGTC 1 cut(s) 1495
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 3 cut(s) 814, 1200, 1206
PspFI CCCAGC 1 cut(s) 836
PspGI CCWGG 3 cut(s) 814, 1200, 1206
PspN4I GGNNCC 6 cut(s) 81, 342, 451, 912, 975, 1189
PspPI GGNCC 7 cut(s) 55, 801, 928, 1187, 1204, 1229, 1526
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 543
PstNI CAGNNNCTG 1 cut(s) 1541
PsuI RGATCY 7 cut(s) 19, 79, 248, 340, 555, 973, 1475
PsyI GACNNNGTC 1 cut(s) 847
PvuI CGATCG 1 cut(s) 741
PvuII CAGCTG 2 cut(s) 965, 1556
RseI CAYNNNNRTG 1 cut(s) 675
SaqAI TTAA 5 cut(s) 150, 396, 1088, 1239, 1274
SatI GCNGC 8 cut(s) 308, 311, 539, 755, 870, 947, 950, 1542
Sau96I GGNCC 7 cut(s) 55, 801, 928, 1187, 1204, 1229, 1526
SchI GAGTC 5 cut(s) 292, 838, 1072, 1298, 1559
ScrFI CCNGG 6 cut(s) 656, 816, 874, 1202, 1208, 1345
SduI GDGCHC 1 cut(s) 656
SfaNI GCATC 4 cut(s) 244, 332, 1256, 1553
SfcI CTRYAG 1 cut(s) 539
SinI GGWCC 4 cut(s) 55, 801, 928, 1187
SmiMI CAYNNNNRTG 1 cut(s) 675
SmlI CTYRAG 2 cut(s) 74, 978
SmoI CTYRAG 2 cut(s) 74, 978
SphI GCATGC 1 cut(s) 1154
Sse9I AATT 8 cut(s) 231, 507, 831, 984, 1089, 1105, 1175, 1353
SsiI CCGC 8 cut(s) 257, 425, 536, 870, 946, 949, 952, 1113
SspMI CTAG 1 cut(s) 1392
StyD4I CCNGG 6 cut(s) 654, 814, 872, 1200, 1206, 1343
StyI CCWWGG 1 cut(s) 760
TaaI ACNGT 3 cut(s) 126, 444, 1187
TaiI ACGT 3 cut(s) 66, 178, 972
TaqI TCGA 8 cut(s) 100, 262, 382, 388, 737, 741, 1083, 1399
TaqII GACCGA 2 cut(s) 837, 916
TasI AATT 8 cut(s) 231, 507, 831, 984, 1089, 1105, 1175, 1353
TauI GCSGC 3 cut(s) 872, 949, 952
TfiI GAWTC 7 cut(s) 221, 379, 771, 1007, 1121, 1340, 1502
Tru1I TTAA 5 cut(s) 150, 396, 1088, 1239, 1274
Tru9I TTAA 5 cut(s) 150, 396, 1088, 1239, 1274
TscAI CASTG 1 cut(s) 1291
TseFI GTSAC 2 cut(s) 662, 1181
TseI GCWGC 5 cut(s) 307, 310, 538, 754, 1541
Tsp45I GTSAC 2 cut(s) 662, 1181
TspDTI ATGAA 5 cut(s) 290, 397, 618, 1032, 1475
TspGWI ACGGA 3 cut(s) 276, 704, 902
TspRI CASTG 1 cut(s) 1291
Tth111I GACNNNGTC 1 cut(s) 847
Van91I CCANNNNNTGG 2 cut(s) 798, 836
VpaK11BI GGWCC 4 cut(s) 55, 801, 928, 1187
XapI RAATTY 2 cut(s) 231, 507
XceI RCATGY 1 cut(s) 1154
XspI CTAG 1 cut(s) 1392
ZraI GACGTC 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.