Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 38 - 107 | 6.4e-10 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 103 |
| AclWI | GGATC | 3 cut(s) | 74, 335, 386 |
| AcsI | RAATTY | 1 cut(s) | 371 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 329 |
| AflII | CTTAAG | 1 cut(s) | 59 |
| AhlI | ACTAGT | 1 cut(s) | 362 |
| AlwI | GGATC | 3 cut(s) | 74, 335, 386 |
| ApoI | RAATTY | 1 cut(s) | 371 |
| AsuHPI | GGTGA | 3 cut(s) | 76, 269, 397 |
| BccI | CCATC | 3 cut(s) | 88, 248, 386 |
| BcuI | ACTAGT | 1 cut(s) | 362 |
| BfaI | CTAG | 1 cut(s) | 363 |
| BfmI | CTRYAG | 2 cut(s) | 275, 324 |
| BfrI | CTTAAG | 1 cut(s) | 59 |
| BlpI | GCTNAGC | 1 cut(s) | 99 |
| BmiI | GGNNCC | 1 cut(s) | 321 |
| BmsI | GCATC | 1 cut(s) | 174 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 99 |
| BsaBI | GATNNNNATC | 1 cut(s) | 54 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 329 |
| Bse8I | GATNNNNATC | 1 cut(s) | 54 |
| BseJI | GATNNNNATC | 1 cut(s) | 54 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 329 |
| BseRI | GAGGAG | 1 cut(s) | 295 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 329 |
| Bsp143I | GATC | 4 cut(s) | 55, 79, 340, 378 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 99 |
| BspACI | CCGC | 1 cut(s) | 103 |
| BspHI | TCATGA | 1 cut(s) | 430 |
| BspLI | GGNNCC | 1 cut(s) | 321 |
| BspPI | GGATC | 3 cut(s) | 74, 335, 386 |
| BspTI | CTTAAG | 1 cut(s) | 59 |
| BssMI | GATC | 4 cut(s) | 55, 79, 340, 378 |
| Bst4CI | ACNGT | 2 cut(s) | 73, 133 |
| BstAFI | CTTAAG | 1 cut(s) | 59 |
| BstDEI | CTNAG | 3 cut(s) | 84, 99, 208 |
| BstKTI | GATC | 4 cut(s) | 58, 82, 343, 381 |
| BstMBI | GATC | 4 cut(s) | 55, 79, 340, 378 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 109 |
| BstSFI | CTRYAG | 2 cut(s) | 275, 324 |
| CciI | TCATGA | 1 cut(s) | 430 |
| CviAII | CATG | 1 cut(s) | 431 |
| CviJI | RGCY | 4 cut(s) | 38, 98, 112, 337 |
| CviKI_1 | RGCY | 4 cut(s) | 38, 98, 112, 337 |
| DdeI | CTNAG | 3 cut(s) | 84, 99, 208 |
| DpnI | GATC | 4 cut(s) | 57, 81, 342, 380 |
| DpnII | GATC | 4 cut(s) | 55, 79, 340, 378 |
| EcoRI | GAATTC | 1 cut(s) | 371 |
| FaeI | CATG | 1 cut(s) | 434 |
| FaiI | YATR | 2 cut(s) | 326, 432 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 182, 214, 342, 374 |
| FatI | CATG | 1 cut(s) | 430 |
| FspBI | CTAG | 1 cut(s) | 363 |
| Hin1II | CATG | 1 cut(s) | 434 |
| HinfI | GANTC | 4 cut(s) | 152, 231, 264, 271 |
| HphI | GGTGA | 3 cut(s) | 76, 269, 397 |
| Hpy188I | TCNGA | 3 cut(s) | 44, 161, 253 |
| Hpy188III | TCNNGA | 6 cut(s) | 136, 172, 268, 368, 376, 431 |
| Hpy99I | CGWCG | 1 cut(s) | 33 |
| HpyAV | CCTTC | 3 cut(s) | 115, 184, 415 |
| HpyCH4III | ACNGT | 2 cut(s) | 73, 133 |
| HpyCH4IV | ACGT | 1 cut(s) | 9 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 109 |
| HpyF3I | CTNAG | 3 cut(s) | 84, 99, 208 |
| HpySE526I | ACGT | 1 cut(s) | 9 |
| Hsp92II | CATG | 1 cut(s) | 434 |
| Kzo9I | GATC | 4 cut(s) | 55, 79, 340, 378 |
| LweI | GCATC | 1 cut(s) | 174 |
| MaeI | CTAG | 1 cut(s) | 363 |
| MaeII | ACGT | 1 cut(s) | 9 |
| MaeIII | GTNAC | 1 cut(s) | 184 |
| MalI | GATC | 4 cut(s) | 57, 81, 342, 380 |
| MboI | GATC | 4 cut(s) | 55, 79, 340, 378 |
| MboII | GAAGA | 1 cut(s) | 151 |
| MluCI | AATT | 2 cut(s) | 371, 403 |
| MlyI | GAGTC | 1 cut(s) | 146 |
| MnlI | CCTC | 4 cut(s) | 187, 273, 327, 391 |
| MseI | TTAA | 2 cut(s) | 60, 246 |
| MspCI | CTTAAG | 1 cut(s) | 59 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 109 |
| NdeII | GATC | 4 cut(s) | 55, 79, 340, 378 |
| NlaIII | CATG | 1 cut(s) | 434 |
| NlaIV | GGNNCC | 1 cut(s) | 321 |
| PagI | TCATGA | 1 cut(s) | 430 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 15 |
| PfeI | GAWTC | 3 cut(s) | 231, 264, 271 |
| PleI | GAGTC | 1 cut(s) | 146 |
| PpsI | GAGTC | 1 cut(s) | 146 |
| PspN4I | GGNNCC | 1 cut(s) | 321 |
| SaqAI | TTAA | 2 cut(s) | 60, 246 |
| Sau3AI | GATC | 4 cut(s) | 55, 79, 340, 378 |
| SchI | GAGTC | 1 cut(s) | 146 |
| SetI | ASST | 4 cut(s) | 12, 66, 126, 426 |
| SfaNI | GCATC | 1 cut(s) | 174 |
| SfcI | CTRYAG | 2 cut(s) | 275, 324 |
| SmlI | CTYRAG | 1 cut(s) | 59 |
| SmoI | CTYRAG | 1 cut(s) | 59 |
| SpeI | ACTAGT | 1 cut(s) | 362 |
| Sse9I | AATT | 2 cut(s) | 371, 403 |
| SsiI | CCGC | 1 cut(s) | 103 |
| SspMI | CTAG | 1 cut(s) | 363 |
| TaaI | ACNGT | 2 cut(s) | 73, 133 |
| TaiI | ACGT | 1 cut(s) | 12 |
| TaqI | TCGA | 1 cut(s) | 297 |
| TasI | AATT | 2 cut(s) | 371, 403 |
| TfiI | GAWTC | 3 cut(s) | 231, 264, 271 |
| Tru1I | TTAA | 2 cut(s) | 60, 246 |
| Tru9I | TTAA | 2 cut(s) | 60, 246 |
| Vha464I | CTTAAG | 1 cut(s) | 59 |
| XapI | RAATTY | 1 cut(s) | 371 |
| XspI | CTAG | 1 cut(s) | 363 |