ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 30 |
| AclWI | GGATC | 3 cut(s) | 74, 335, 527 |
| AcuI | CTGAAG | 1 cut(s) | 542 |
| AgsI | TTSAA | 3 cut(s) | 160, 247, 565 |
| AluBI | AGCT | 3 cut(s) | 222, 498, 592 |
| AluI | AGCT | 3 cut(s) | 222, 498, 592 |
| Alw21I | GWGCWC | 2 cut(s) | 224, 612 |
| Alw26I | GTCTC | 1 cut(s) | 565 |
| AlwI | GGATC | 3 cut(s) | 74, 335, 527 |
| Ama87I | CYCGRG | 1 cut(s) | 568 |
| AspLEI | GCGC | 1 cut(s) | 406 |
| AsuC2I | CCSGG | 1 cut(s) | 345 |
| AsuHPI | GGTGA | 2 cut(s) | 29, 526 |
| AsuII | TTCGAA | 1 cut(s) | 600 |
| AvaI | CYCGRG | 1 cut(s) | 568 |
| BanI | GGYRCC | 1 cut(s) | 30 |
| BanII | GRGCYC | 1 cut(s) | 224 |
| BbsI | GAAGAC | 2 cut(s) | 229, 548 |
| Bbv12I | GWGCWC | 2 cut(s) | 224, 612 |
| BccI | CCATC | 3 cut(s) | 248, 323, 479 |
| BcnI | CCSGG | 1 cut(s) | 345 |
| BcoDI | GTCTC | 1 cut(s) | 565 |
| BfaI | CTAG | 1 cut(s) | 132 |
| Bme1390I | CCNGG | 1 cut(s) | 345 |
| BmeT110I | CYCGRG | 1 cut(s) | 568 |
| BmiI | GGNNCC | 1 cut(s) | 32 |
| BmrFI | CCNGG | 1 cut(s) | 345 |
| BpiI | GAAGAC | 2 cut(s) | 229, 548 |
| BpmI | CTGGAG | 1 cut(s) | 501 |
| Bpu14I | TTCGAA | 1 cut(s) | 600 |
| BpuMI | CCSGG | 1 cut(s) | 345 |
| BsaBI | GATNNNNATC | 1 cut(s) | 258 |
| BsaJI | CCNNGG | 2 cut(s) | 287, 344 |
| Bse1I | ACTGG | 1 cut(s) | 484 |
| Bse8I | GATNNNNATC | 1 cut(s) | 258 |
| BseDI | CCNNGG | 2 cut(s) | 287, 344 |
| BseGI | GGATG | 1 cut(s) | 82 |
| BseJI | GATNNNNATC | 1 cut(s) | 258 |
| BseMII | CTCAG | 2 cut(s) | 90, 530 |
| BseNI | ACTGG | 1 cut(s) | 484 |
| BseRI | GAGGAG | 1 cut(s) | 209 |
| BshNI | GGYRCC | 1 cut(s) | 30 |
| BsiHKAI | GWGCWC | 2 cut(s) | 224, 612 |
| BsiHKCI | CYCGRG | 1 cut(s) | 568 |
| BsiSI | CCGG | 1 cut(s) | 344 |
| BsmAI | GTCTC | 1 cut(s) | 565 |
| BsoBI | CYCGRG | 1 cut(s) | 568 |
| Bsp119I | TTCGAA | 1 cut(s) | 600 |
| Bsp1286I | GDGCHC | 2 cut(s) | 224, 612 |
| Bsp143I | GATC | 4 cut(s) | 55, 79, 340, 532 |
| Bsp19I | CCATGG | 1 cut(s) | 287 |
| BspCNI | CTCAG | 2 cut(s) | 91, 531 |
| BspLI | GGNNCC | 1 cut(s) | 32 |
| BspPI | GGATC | 3 cut(s) | 74, 335, 527 |
| BspT104I | TTCGAA | 1 cut(s) | 600 |
| BspT107I | GGYRCC | 1 cut(s) | 30 |
| BsrI | ACTGG | 1 cut(s) | 484 |
| BssECI | CCNNGG | 2 cut(s) | 287, 344 |
| BssMI | GATC | 4 cut(s) | 55, 79, 340, 532 |
| BssT1I | CCWWGG | 1 cut(s) | 287 |
| Bst4CI | ACNGT | 4 cut(s) | 73, 475, 507, 582 |
| BstBI | TTCGAA | 1 cut(s) | 600 |
| BstC8I | GCNNGC | 3 cut(s) | 312, 551, 590 |
| BstDEI | CTNAG | 2 cut(s) | 99, 539 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstF5I | GGATG | 1 cut(s) | 82 |
| BstHHI | GCGC | 1 cut(s) | 406 |
| BstKTI | GATC | 4 cut(s) | 58, 82, 343, 535 |
| BstMAI | GTCTC | 1 cut(s) | 565 |
| BstMBI | GATC | 4 cut(s) | 55, 79, 340, 532 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 403 |
| BstNSI | RCATGY | 1 cut(s) | 553 |
| BstSCI | CCNGG | 1 cut(s) | 343 |
| BstV2I | GAAGAC | 2 cut(s) | 229, 548 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtsCI | GGATG | 1 cut(s) | 82 |
| BtsIMutI | CAGTG | 1 cut(s) | 78 |
| Cac8I | GCNNGC | 3 cut(s) | 312, 551, 590 |
| CfoI | GCGC | 1 cut(s) | 406 |
| CseI | GACGC | 1 cut(s) | 542 |
| CviAII | CATG | 3 cut(s) | 288, 421, 550 |
| CviJI | RGCY | 6 cut(s) | 112, 222, 314, 366, 498, 592 |
| CviKI_1 | RGCY | 6 cut(s) | 112, 222, 314, 366, 498, 592 |
| DdeI | CTNAG | 2 cut(s) | 99, 539 |
| DpnI | GATC | 4 cut(s) | 57, 81, 342, 534 |
| DpnII | GATC | 4 cut(s) | 55, 79, 340, 532 |
| Ecl136II | GAGCTC | 1 cut(s) | 222 |
| Eco130I | CCWWGG | 1 cut(s) | 287 |
| Eco24I | GRGCYC | 1 cut(s) | 224 |
| Eco53kI | GAGCTC | 1 cut(s) | 222 |
| Eco57I | CTGAAG | 1 cut(s) | 542 |
| Eco88I | CYCGRG | 1 cut(s) | 568 |
| EcoICRI | GAGCTC | 1 cut(s) | 222 |
| EcoT14I | CCWWGG | 1 cut(s) | 287 |
| EcoT38I | GRGCYC | 1 cut(s) | 224 |
| ErhI | CCWWGG | 1 cut(s) | 287 |
| FaeI | CATG | 3 cut(s) | 291, 424, 553 |
| FaiI | YATR | 6 cut(s) | 68, 289, 422, 551, 576, 606 |
| FatI | CATG | 3 cut(s) | 287, 420, 549 |
| FokI | GGATG | 1 cut(s) | 89 |
| FriOI | GRGCYC | 1 cut(s) | 224 |
| FspBI | CTAG | 1 cut(s) | 132 |
| GlaI | GCGC | 1 cut(s) | 405 |
| GsuI | CTGGAG | 1 cut(s) | 501 |
| HapII | CCGG | 1 cut(s) | 344 |
| HgaI | GACGC | 1 cut(s) | 542 |
| HhaI | GCGC | 1 cut(s) | 406 |
| Hin1II | CATG | 3 cut(s) | 291, 424, 553 |
| Hin6I | GCGC | 1 cut(s) | 404 |
| HinP1I | GCGC | 1 cut(s) | 404 |
| HincII | GTYRAC | 4 cut(s) | 186, 355, 411, 462 |
| HindII | GTYRAC | 4 cut(s) | 186, 355, 411, 462 |
| HinfI | GANTC | 4 cut(s) | 152, 259, 264, 467 |
| HpaII | CCGG | 1 cut(s) | 344 |
| HphI | GGTGA | 2 cut(s) | 29, 526 |
| Hpy166II | GTNNAC | 4 cut(s) | 186, 355, 411, 462 |
| Hpy188I | TCNGA | 5 cut(s) | 226, 253, 269, 532, 540 |
| Hpy188III | TCNNGA | 2 cut(s) | 44, 59 |
| Hpy8I | GTNNAC | 4 cut(s) | 186, 355, 411, 462 |
| Hpy99I | CGWCG | 2 cut(s) | 53, 56 |
| HpyAV | CCTTC | 3 cut(s) | 253, 408, 420 |
| HpyCH4III | ACNGT | 4 cut(s) | 73, 475, 507, 582 |
| HpyCH4IV | ACGT | 1 cut(s) | 147 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 403 |
| HpyF3I | CTNAG | 2 cut(s) | 99, 539 |
| HpySE526I | ACGT | 1 cut(s) | 147 |
| Hsp92II | CATG | 3 cut(s) | 291, 424, 553 |
| HspAI | GCGC | 1 cut(s) | 404 |
| Kzo9I | GATC | 4 cut(s) | 55, 79, 340, 532 |
| LmnI | GCTCC | 2 cut(s) | 226, 495 |
| LpnPI | CCDG | 6 cut(s) | 29, 44, 101, 296, 357, 465 |
| MaeI | CTAG | 1 cut(s) | 132 |
| MaeII | ACGT | 1 cut(s) | 147 |
| MaeIII | GTNAC | 2 cut(s) | 17, 475 |
| MalI | GATC | 4 cut(s) | 57, 81, 342, 534 |
| MboI | GATC | 4 cut(s) | 55, 79, 340, 532 |
| MboII | GAAGA | 3 cut(s) | 187, 229, 548 |
| MhlI | GDGCHC | 2 cut(s) | 224, 612 |
| MluCI | AATT | 2 cut(s) | 301, 432 |
| MlyI | GAGTC | 1 cut(s) | 258 |
| MnlI | CCTC | 5 cut(s) | 137, 187, 504, 534, 546 |
| MseI | TTAA | 2 cut(s) | 144, 584 |
| MslI | CAYNNNNRTG | 2 cut(s) | 71, 160 |
| MspI | CCGG | 1 cut(s) | 344 |
| MspR9I | CCNGG | 1 cut(s) | 345 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 403 |
| NciI | CCSGG | 1 cut(s) | 345 |
| NcoI | CCATGG | 1 cut(s) | 287 |
| NdeII | GATC | 4 cut(s) | 55, 79, 340, 532 |
| NlaIII | CATG | 3 cut(s) | 291, 424, 553 |
| NlaIV | GGNNCC | 1 cut(s) | 32 |
| NmuCI | GTSAC | 1 cut(s) | 17 |
| NspI | RCATGY | 1 cut(s) | 553 |
| NspV | TTCGAA | 1 cut(s) | 600 |
| PaeI | GCATGC | 1 cut(s) | 553 |
| PfeI | GAWTC | 3 cut(s) | 152, 259, 467 |
| PleI | GAGTC | 1 cut(s) | 258 |
| PpsI | GAGTC | 1 cut(s) | 258 |
| Psp124BI | GAGCTC | 1 cut(s) | 224 |
| PspN4I | GGNNCC | 1 cut(s) | 32 |
| RseI | CAYNNNNRTG | 2 cut(s) | 71, 160 |
| SacI | GAGCTC | 1 cut(s) | 224 |
| SaqAI | TTAA | 2 cut(s) | 144, 584 |
| Sau3AI | GATC | 4 cut(s) | 55, 79, 340, 532 |
| SchI | GAGTC | 1 cut(s) | 258 |
| ScrFI | CCNGG | 1 cut(s) | 345 |
| SduI | GDGCHC | 2 cut(s) | 224, 612 |
| SetI | ASST | 5 cut(s) | 150, 224, 360, 500, 594 |
| SfuI | TTCGAA | 1 cut(s) | 600 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 71, 160 |
| SphI | GCATGC | 1 cut(s) | 553 |
| Sse9I | AATT | 2 cut(s) | 301, 432 |
| SspI | AATATT | 1 cut(s) | 142 |
| SspMI | CTAG | 1 cut(s) | 132 |
| SstI | GAGCTC | 1 cut(s) | 224 |
| StyD4I | CCNGG | 1 cut(s) | 343 |
| StyI | CCWWGG | 1 cut(s) | 287 |
| TaaI | ACNGT | 4 cut(s) | 73, 475, 507, 582 |
| TaiI | ACGT | 1 cut(s) | 150 |
| TaqI | TCGA | 3 cut(s) | 262, 339, 600 |
| TasI | AATT | 2 cut(s) | 301, 432 |
| TfiI | GAWTC | 3 cut(s) | 152, 259, 467 |
| Tru1I | TTAA | 2 cut(s) | 144, 584 |
| Tru9I | TTAA | 2 cut(s) | 144, 584 |
| TscAI | CASTG | 1 cut(s) | 78 |
| TseFI | GTSAC | 1 cut(s) | 17 |
| Tsp45I | GTSAC | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 479 |
| TspRI | CASTG | 1 cut(s) | 78 |
| XceI | RCATGY | 1 cut(s) | 553 |
| XspI | CTAG | 1 cut(s) | 132 |