Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 36 - 106 | 1.3e-07 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 859 |
| AatII | GACGTC | 2 cut(s) | 201, 1332 |
| Acc36I | ACCTGC | 1 cut(s) | 859 |
| AccB1I | GGYRCC | 2 cut(s) | 565, 1561 |
| AccI | GTMKAC | 2 cut(s) | 339, 1266 |
| AccIII | TCCGGA | 1 cut(s) | 381 |
| AciI | CCGC | 7 cut(s) | 841, 938, 949, 952, 955, 1113, 1347 |
| AclWI | GGATC | 4 cut(s) | 229, 373, 386, 457 |
| AcsI | RAATTY | 4 cut(s) | 473, 587, 1126, 1396 |
| AcvI | CACGTG | 1 cut(s) | 1171 |
| AcyI | GRCGYC | 2 cut(s) | 198, 1329 |
| AdeI | CACNNNGTG | 1 cut(s) | 1463 |
| AfaI | GTAC | 2 cut(s) | 166, 1245 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 388, 467, 821, 968, 1217, 1312, 1625 |
| AgsI | TTSAA | 4 cut(s) | 152, 160, 212, 1132 |
| AhlI | ACTAGT | 1 cut(s) | 13 |
| AjnI | CCWGG | 2 cut(s) | 568, 1300 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 684, 716, 716, 748 |
| AluBI | AGCT | 4 cut(s) | 371, 421, 1358, 1502 |
| AluI | AGCT | 4 cut(s) | 371, 421, 1358, 1502 |
| Alw26I | GTCTC | 2 cut(s) | 189, 1313 |
| AlwI | GGATC | 4 cut(s) | 229, 373, 386, 457 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1502 |
| Ama87I | CYCGRG | 1 cut(s) | 1096 |
| Aor13HI | TCCGGA | 1 cut(s) | 381 |
| AoxI | GGCC | 7 cut(s) | 183, 1208, 1237, 1303, 1385, 1403, 1627 |
| ApoI | RAATTY | 4 cut(s) | 473, 587, 1126, 1396 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 188, 220, 785, 817 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 104 |
| AspS9I | GGNCC | 5 cut(s) | 79, 183, 1208, 1238, 1403 |
| AsuC2I | CCSGG | 1 cut(s) | 815 |
| AsuHPI | GGTGA | 4 cut(s) | 193, 914, 1424, 1457 |
| AvaI | CYCGRG | 1 cut(s) | 1096 |
| AvaII | GGWCC | 1 cut(s) | 79 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 33 |
| BamHI | GGATCC | 1 cut(s) | 378 |
| BanI | GGYRCC | 2 cut(s) | 565, 1561 |
| BanII | GRGCYC | 2 cut(s) | 814, 1235 |
| BbrPI | CACGTG | 1 cut(s) | 1171 |
| BbvCI | CCTCAGC | 1 cut(s) | 417 |
| BccI | CCATC | 5 cut(s) | 194, 540, 856, 893, 1358 |
| BceAI | ACGGC | 5 cut(s) | 346, 1390, 1400, 1475, 1614 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1040, 1074 |
| BciT130I | CCWGG | 2 cut(s) | 570, 1302 |
| BciVI | GTATCC | 1 cut(s) | 1573 |
| BclI | TGATCA | 2 cut(s) | 643, 684 |
| BcnI | CCSGG | 1 cut(s) | 815 |
| BcoDI | GTCTC | 2 cut(s) | 189, 1313 |
| BcuI | ACTAGT | 1 cut(s) | 13 |
| BfaI | CTAG | 5 cut(s) | 14, 596, 846, 1182, 1635 |
| BfmI | CTRYAG | 1 cut(s) | 487 |
| BfuAI | ACCTGC | 1 cut(s) | 859 |
| BfuI | GTATCC | 1 cut(s) | 1573 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 818 |
| BglII | AGATCT | 1 cut(s) | 55 |
| BisI | GCNGC | 3 cut(s) | 950, 953, 956 |
| BlpI | GCTNAGC | 1 cut(s) | 945 |
| BlsI | GCNGC | 3 cut(s) | 951, 954, 957 |
| Bme1390I | CCNGG | 3 cut(s) | 570, 815, 1302 |
| Bme18I | GGWCC | 1 cut(s) | 79 |
| BmeT110I | CYCGRG | 1 cut(s) | 1096 |
| BmgT120I | GGNCC | 5 cut(s) | 79, 183, 1208, 1238, 1403 |
| BmiI | GGNNCC | 5 cut(s) | 81, 380, 567, 1404, 1563 |
| BmrFI | CCNGG | 3 cut(s) | 570, 815, 1302 |
| BmrI | ACTGGG | 2 cut(s) | 1235, 1613 |
| BmsI | GCATC | 1 cut(s) | 34 |
| BmuI | ACTGGG | 2 cut(s) | 1235, 1613 |
| Bpu10I | CCTNAGC | 1 cut(s) | 417 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 945 |
| BpuMI | CCSGG | 1 cut(s) | 815 |
| BsaAI | YACGTR | 1 cut(s) | 1171 |
| BsaHI | GRCGYC | 2 cut(s) | 198, 1329 |
| BsaJI | CCNNGG | 5 cut(s) | 287, 466, 723, 813, 1441 |
| BsaWI | WCCGGW | 3 cut(s) | 381, 580, 961 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1459, 1489, 1491, 1521 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 388, 467, 821, 968, 1217, 1312, 1625 |
| Bse1I | ACTGG | 2 cut(s) | 1241, 1619 |
| BseAI | TCCGGA | 1 cut(s) | 381 |
| BseBI | CCWGG | 2 cut(s) | 570, 1302 |
| BseDI | CCNNGG | 5 cut(s) | 287, 466, 723, 813, 1441 |
| BseGI | GGATG | 3 cut(s) | 49, 733, 1321 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 388, 467, 821, 968, 1217, 1312, 1625 |
| BseMII | CTCAG | 3 cut(s) | 431, 1368, 1538 |
| BseNI | ACTGG | 2 cut(s) | 1241, 1619 |
| BseRI | GAGGAG | 4 cut(s) | 405, 866, 980, 1380 |
| BseYI | CCCAGC | 3 cut(s) | 656, 821, 1502 |
| BsgI | GTGCAG | 2 cut(s) | 1070, 1176 |
| BshFI | GGCC | 7 cut(s) | 185, 1210, 1239, 1305, 1387, 1405, 1629 |
| BshNI | GGYRCC | 2 cut(s) | 565, 1561 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1096 |
| BsiSI | CCGG | 4 cut(s) | 382, 581, 815, 962 |
| BslFI | GGGAC | 1 cut(s) | 1098 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 388, 467, 821, 968, 1217, 1312, 1625 |
| BsmAI | GTCTC | 2 cut(s) | 189, 1313 |
| BsmBI | CGTCTC | 1 cut(s) | 189 |
| BsmFI | GGGAC | 1 cut(s) | 1098 |
| BsnI | GGCC | 7 cut(s) | 185, 1210, 1239, 1305, 1387, 1405, 1629 |
| BsoBI | CYCGRG | 1 cut(s) | 1096 |
| Bsp1286I | GDGCHC | 2 cut(s) | 814, 1235 |
| Bsp13I | TCCGGA | 1 cut(s) | 381 |
| Bsp143I | GATC | 9 cut(s) | 55, 221, 226, 237, 298, 378, 462, 643, 684 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 945 |
| Bsp19I | CCATGG | 2 cut(s) | 287, 1441 |
| BspACI | CCGC | 7 cut(s) | 841, 938, 949, 952, 955, 1113, 1347 |
| BspANI | GGCC | 7 cut(s) | 185, 1210, 1239, 1305, 1387, 1405, 1629 |
| BspCNI | CTCAG | 3 cut(s) | 430, 1369, 1537 |
| BspEI | TCCGGA | 1 cut(s) | 381 |
| BspLI | GGNNCC | 5 cut(s) | 81, 380, 567, 1404, 1563 |
| BspMI | ACCTGC | 1 cut(s) | 859 |
| BspPI | GGATC | 4 cut(s) | 229, 373, 386, 457 |
| BspT107I | GGYRCC | 2 cut(s) | 565, 1561 |
| BsrI | ACTGG | 2 cut(s) | 1241, 1619 |
| BssECI | CCNNGG | 5 cut(s) | 287, 466, 723, 813, 1441 |
| BssMI | GATC | 9 cut(s) | 55, 221, 226, 237, 298, 378, 462, 643, 684 |
| BssNI | GRCGYC | 2 cut(s) | 198, 1329 |
| BssT1I | CCWWGG | 4 cut(s) | 287, 466, 723, 1441 |
| Bst2UI | CCWGG | 2 cut(s) | 570, 1302 |
| Bst4CI | ACNGT | 8 cut(s) | 91, 488, 699, 718, 798, 1324, 1429, 1558 |
| Bst6I | CTCTTC | 7 cut(s) | 95, 155, 167, 761, 1466, 1530, 1569 |
| BstACI | GRCGYC | 2 cut(s) | 198, 1329 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1520 |
| BstBAI | YACGTR | 1 cut(s) | 1171 |
| BstC8I | GCNNGC | 6 cut(s) | 36, 423, 810, 942, 1023, 1115 |
| BstDEI | CTNAG | 5 cut(s) | 417, 926, 945, 1377, 1524 |
| BstDSI | CCRYGG | 2 cut(s) | 287, 1441 |
| BstF5I | GGATG | 3 cut(s) | 49, 733, 1321 |
| BstKTI | GATC | 9 cut(s) | 58, 224, 229, 240, 301, 381, 465, 646, 687 |
| BstMAI | GTCTC | 2 cut(s) | 189, 1313 |
| BstMBI | GATC | 9 cut(s) | 55, 221, 226, 237, 298, 378, 462, 643, 684 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 44, 818, 946, 955, 1245, 1355, 1520 |
| BstNI | CCWGG | 2 cut(s) | 570, 1302 |
| BstNSI | RCATGY | 1 cut(s) | 1025 |
| BstSCI | CCNGG | 3 cut(s) | 568, 813, 1300 |
| BstSFI | CTRYAG | 1 cut(s) | 487 |
| BstX2I | RGATCY | 3 cut(s) | 55, 221, 378 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 798 |
| BstYI | RGATCY | 3 cut(s) | 55, 221, 378 |
| BsuI | GTATCC | 1 cut(s) | 1573 |
| BsuRI | GGCC | 7 cut(s) | 185, 1210, 1239, 1305, 1387, 1405, 1629 |
| BtgI | CCRYGG | 2 cut(s) | 287, 1441 |
| BtsCI | GGATG | 3 cut(s) | 49, 733, 1321 |
| BtsIMutI | CAGTG | 4 cut(s) | 803, 1248, 1329, 1563 |
| BveI | ACCTGC | 1 cut(s) | 859 |
| Cac8I | GCNNGC | 6 cut(s) | 36, 423, 810, 942, 1023, 1115 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1502 |
| Cfr13I | GGNCC | 5 cut(s) | 79, 183, 1208, 1238, 1403 |
| CseI | GACGC | 1 cut(s) | 1014 |
| CsiI | ACCWGGT | 1 cut(s) | 568 |
| Csp6I | GTAC | 2 cut(s) | 165, 1244 |
| CviAII | CATG | 5 cut(s) | 288, 647, 1022, 1152, 1442 |
| CviQI | GTAC | 2 cut(s) | 165, 1244 |
| DdeI | CTNAG | 5 cut(s) | 417, 926, 945, 1377, 1524 |
| DpnI | GATC | 9 cut(s) | 57, 223, 228, 239, 300, 380, 464, 645, 686 |
| DpnII | GATC | 9 cut(s) | 55, 221, 226, 237, 298, 378, 462, 643, 684 |
| DraIII | CACNNNGTG | 1 cut(s) | 1463 |
| Eam1104I | CTCTTC | 7 cut(s) | 95, 155, 167, 761, 1466, 1530, 1569 |
| EarI | CTCTTC | 7 cut(s) | 95, 155, 167, 761, 1466, 1530, 1569 |
| Eco130I | CCWWGG | 4 cut(s) | 287, 466, 723, 1441 |
| Eco24I | GRGCYC | 2 cut(s) | 814, 1235 |
| Eco47I | GGWCC | 1 cut(s) | 79 |
| Eco72I | CACGTG | 1 cut(s) | 1171 |
| Eco88I | CYCGRG | 1 cut(s) | 1096 |
| EcoO109I | RGGNCCY | 1 cut(s) | 79 |
| EcoRI | GAATTC | 1 cut(s) | 1396 |
| EcoRII | CCWGG | 2 cut(s) | 568, 1300 |
| EcoT14I | CCWWGG | 4 cut(s) | 287, 466, 723, 1441 |
| EcoT38I | GRGCYC | 2 cut(s) | 814, 1235 |
| ErhI | CCWWGG | 4 cut(s) | 287, 466, 723, 1441 |
| Esp3I | CGTCTC | 1 cut(s) | 189 |
| FaeI | CATG | 5 cut(s) | 291, 650, 1025, 1155, 1445 |
| FaqI | GGGAC | 1 cut(s) | 1098 |
| FatI | CATG | 5 cut(s) | 287, 646, 1021, 1151, 1441 |
| FauI | CCCGC | 1 cut(s) | 1106 |
| FbaI | TGATCA | 2 cut(s) | 643, 684 |
| FblI | GTMKAC | 2 cut(s) | 339, 1266 |
| Fnu4HI | GCNGC | 3 cut(s) | 950, 953, 956 |
| FokI | GGATG | 3 cut(s) | 56, 740, 1328 |
| FriOI | GRGCYC | 2 cut(s) | 814, 1235 |
| Fsp4HI | GCNGC | 3 cut(s) | 950, 953, 956 |
| FspBI | CTAG | 5 cut(s) | 14, 596, 846, 1182, 1635 |
| GluI | GCNGC | 3 cut(s) | 950, 953, 956 |
| GsaI | CCCAGC | 3 cut(s) | 660, 825, 1506 |
| HaeIII | GGCC | 7 cut(s) | 185, 1210, 1239, 1305, 1387, 1405, 1629 |
| HapII | CCGG | 4 cut(s) | 382, 581, 815, 962 |
| HgaI | GACGC | 1 cut(s) | 1014 |
| Hin1I | GRCGYC | 2 cut(s) | 198, 1329 |
| Hin1II | CATG | 5 cut(s) | 291, 650, 1025, 1155, 1445 |
| HindIII | AAGCTT | 2 cut(s) | 369, 1356 |
| HinfI | GANTC | 6 cut(s) | 67, 905, 980, 1078, 1454, 1639 |
| HpaII | CCGG | 4 cut(s) | 382, 581, 815, 962 |
| HphI | GGTGA | 4 cut(s) | 193, 914, 1424, 1457 |
| Hpy166II | GTNNAC | 7 cut(s) | 340, 454, 529, 735, 1267, 1327, 1448 |
| Hpy188I | TCNGA | 6 cut(s) | 72, 226, 1000, 1030, 1395, 1527 |
| Hpy188III | TCNNGA | 8 cut(s) | 251, 382, 521, 596, 1038, 1096, 1137, 1497 |
| Hpy8I | GTNNAC | 7 cut(s) | 340, 454, 529, 735, 1267, 1327, 1448 |
| Hpy99I | CGWCG | 1 cut(s) | 332 |
| HpyAV | CCTTC | 3 cut(s) | 630, 671, 1564 |
| HpyCH4III | ACNGT | 8 cut(s) | 91, 488, 699, 718, 798, 1324, 1429, 1558 |
| HpyCH4IV | ACGT | 7 cut(s) | 63, 198, 607, 706, 1170, 1329, 1603 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 44, 818, 946, 955, 1245, 1355, 1520 |
| HpyF3I | CTNAG | 5 cut(s) | 417, 926, 945, 1377, 1524 |
| HpySE526I | ACGT | 7 cut(s) | 63, 198, 607, 706, 1170, 1329, 1603 |
| Hsp92I | GRCGYC | 2 cut(s) | 198, 1329 |
| Hsp92II | CATG | 5 cut(s) | 291, 650, 1025, 1155, 1445 |
| Kpn2I | TCCGGA | 1 cut(s) | 381 |
| Ksp22I | TGATCA | 2 cut(s) | 643, 684 |
| Kzo9I | GATC | 9 cut(s) | 55, 221, 226, 237, 298, 378, 462, 643, 684 |
| LmnI | GCTCC | 2 cut(s) | 865, 1499 |
| LweI | GCATC | 1 cut(s) | 34 |
| MabI | ACCWGGT | 1 cut(s) | 568 |
| MaeI | CTAG | 5 cut(s) | 14, 596, 846, 1182, 1635 |
| MaeII | ACGT | 7 cut(s) | 63, 198, 607, 706, 1170, 1329, 1603 |
| MaeIII | GTNAC | 3 cut(s) | 199, 1171, 1380 |
| MalI | GATC | 9 cut(s) | 57, 223, 228, 239, 300, 380, 464, 645, 686 |
| MboI | GATC | 9 cut(s) | 55, 221, 226, 237, 298, 378, 462, 643, 684 |
| MfeI | CAATTG | 2 cut(s) | 432, 755 |
| MflI | RGATCY | 3 cut(s) | 55, 221, 378 |
| MhlI | GDGCHC | 2 cut(s) | 814, 1235 |
| MluCI | AATT | 9 cut(s) | 432, 443, 473, 587, 755, 1031, 1068, 1126, 1396 |
| MlyI | GAGTC | 2 cut(s) | 914, 989 |
| MmeI | TCCRAC | 3 cut(s) | 689, 1045, 1603 |
| MroI | TCCGGA | 1 cut(s) | 381 |
| MroXI | GAANNNNTTC | 1 cut(s) | 104 |
| MseI | TTAA | 3 cut(s) | 387, 477, 1071 |
| MslI | CAYNNNNRTG | 1 cut(s) | 651 |
| MspA1I | CMGCKG | 1 cut(s) | 940 |
| MspI | CCGG | 4 cut(s) | 382, 581, 815, 962 |
| MspR9I | CCNGG | 3 cut(s) | 570, 815, 1302 |
| MunI | CAATTG | 2 cut(s) | 432, 755 |
| MvaI | CCWGG | 2 cut(s) | 570, 1302 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 44, 818, 946, 955, 1245, 1355, 1520 |
| NciI | CCSGG | 1 cut(s) | 815 |
| NcoI | CCATGG | 2 cut(s) | 287, 1441 |
| NdeII | GATC | 9 cut(s) | 55, 221, 226, 237, 298, 378, 462, 643, 684 |
| NlaIII | CATG | 5 cut(s) | 291, 650, 1025, 1155, 1445 |
| NlaIV | GGNNCC | 5 cut(s) | 81, 380, 567, 1404, 1563 |
| NmuCI | GTSAC | 2 cut(s) | 199, 1171 |
| NspI | RCATGY | 1 cut(s) | 1025 |
| PaeI | GCATGC | 1 cut(s) | 1025 |
| PaeR7I | CTCGAG | 1 cut(s) | 1096 |
| PaqCI | CACCTGC | 1 cut(s) | 859 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 703 |
| PdmI | GAANNNNTTC | 1 cut(s) | 104 |
| PfeI | GAWTC | 4 cut(s) | 67, 1078, 1454, 1639 |
| PflFI | GACNNNGTC | 2 cut(s) | 718, 979 |
| PkrI | GCNGC | 3 cut(s) | 951, 954, 957 |
| PleI | GAGTC | 2 cut(s) | 913, 988 |
| PmaCI | CACGTG | 1 cut(s) | 1171 |
| PmlI | CACGTG | 1 cut(s) | 1171 |
| PpsI | GAGTC | 2 cut(s) | 913, 988 |
| Ppu21I | YACGTR | 1 cut(s) | 1171 |
| PpuMI | RGGWCCY | 1 cut(s) | 79 |
| Psp5II | RGGWCCY | 1 cut(s) | 79 |
| Psp6I | CCWGG | 2 cut(s) | 568, 1300 |
| PspCI | CACGTG | 1 cut(s) | 1171 |
| PspFI | CCCAGC | 3 cut(s) | 656, 821, 1502 |
| PspGI | CCWGG | 2 cut(s) | 568, 1300 |
| PspN4I | GGNNCC | 5 cut(s) | 81, 380, 567, 1404, 1563 |
| PspPI | GGNCC | 5 cut(s) | 79, 183, 1208, 1238, 1403 |
| PspPPI | RGGWCCY | 1 cut(s) | 79 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1502 |
| PsuI | RGATCY | 3 cut(s) | 55, 221, 378 |
| PsyI | GACNNNGTC | 2 cut(s) | 718, 979 |
| RsaI | GTAC | 2 cut(s) | 166, 1245 |
| RsaNI | GTAC | 2 cut(s) | 165, 1244 |
| RseI | CAYNNNNRTG | 1 cut(s) | 651 |
| SaqAI | TTAA | 3 cut(s) | 387, 477, 1071 |
| SatI | GCNGC | 3 cut(s) | 950, 953, 956 |
| Sau3AI | GATC | 9 cut(s) | 55, 221, 226, 237, 298, 378, 462, 643, 684 |
| Sau96I | GGNCC | 5 cut(s) | 79, 183, 1208, 1238, 1403 |
| SchI | GAGTC | 2 cut(s) | 914, 989 |
| ScrFI | CCNGG | 3 cut(s) | 570, 815, 1302 |
| SduI | GDGCHC | 2 cut(s) | 814, 1235 |
| SexAI | ACCWGGT | 1 cut(s) | 568 |
| SfaNI | GCATC | 1 cut(s) | 34 |
| SfcI | CTRYAG | 1 cut(s) | 487 |
| Sfr274I | CTCGAG | 1 cut(s) | 1096 |
| SinI | GGWCC | 1 cut(s) | 79 |
| SlaI | CTCGAG | 1 cut(s) | 1096 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 651 |
| SmlI | CTYRAG | 1 cut(s) | 1096 |
| SmoI | CTYRAG | 1 cut(s) | 1096 |
| SpeI | ACTAGT | 1 cut(s) | 13 |
| SphI | GCATGC | 1 cut(s) | 1025 |
| Sse9I | AATT | 9 cut(s) | 432, 443, 473, 587, 755, 1031, 1068, 1126, 1396 |
| SsiI | CCGC | 7 cut(s) | 841, 938, 949, 952, 955, 1113, 1347 |
| SspI | AATATT | 1 cut(s) | 234 |
| SspMI | CTAG | 5 cut(s) | 14, 596, 846, 1182, 1635 |
| StyD4I | CCNGG | 3 cut(s) | 568, 813, 1300 |
| StyI | CCWWGG | 4 cut(s) | 287, 466, 723, 1441 |
| TaaI | ACNGT | 8 cut(s) | 91, 488, 699, 718, 798, 1324, 1429, 1558 |
| TaiI | ACGT | 7 cut(s) | 66, 201, 610, 709, 1173, 1332, 1606 |
| TaqI | TCGA | 7 cut(s) | 229, 297, 741, 1097, 1353, 1490, 1642 |
| TasI | AATT | 9 cut(s) | 432, 443, 473, 587, 755, 1031, 1068, 1126, 1396 |
| TauI | GCSGC | 3 cut(s) | 952, 955, 958 |
| TfiI | GAWTC | 4 cut(s) | 67, 1078, 1454, 1639 |
| Tru1I | TTAA | 3 cut(s) | 387, 477, 1071 |
| Tru9I | TTAA | 3 cut(s) | 387, 477, 1071 |
| TscAI | CASTG | 4 cut(s) | 803, 1255, 1329, 1563 |
| TseFI | GTSAC | 2 cut(s) | 199, 1171 |
| Tsp45I | GTSAC | 2 cut(s) | 199, 1171 |
| TspDTI | ATGAA | 4 cut(s) | 185, 618, 1140, 1431 |
| TspGWI | ACGGA | 4 cut(s) | 41, 556, 992, 1547 |
| TspRI | CASTG | 4 cut(s) | 803, 1255, 1329, 1563 |
| Tth111I | GACNNNGTC | 2 cut(s) | 718, 979 |
| VpaK11BI | GGWCC | 1 cut(s) | 79 |
| XapI | RAATTY | 4 cut(s) | 473, 587, 1126, 1396 |
| XbaI | TCTAGA | 1 cut(s) | 595 |
| XceI | RCATGY | 1 cut(s) | 1025 |
| XhoI | CTCGAG | 1 cut(s) | 1096 |
| XmiI | GTMKAC | 2 cut(s) | 339, 1266 |
| XmnI | GAANNNNTTC | 1 cut(s) | 104 |
| XspI | CTAG | 5 cut(s) | 14, 596, 846, 1182, 1635 |
| ZraI | GACGTC | 2 cut(s) | 199, 1330 |