ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 38 - 84 | 3e-08 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 52, 219 |
| AcsI | RAATTY | 2 cut(s) | 75, 202 |
| AcuI | CTGAAG | 3 cut(s) | 316, 519, 725 |
| AcyI | GRCGYC | 1 cut(s) | 392 |
| AfaI | GTAC | 3 cut(s) | 47, 280, 672 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 549, 649 |
| AgsI | TTSAA | 2 cut(s) | 388, 560 |
| AjnI | CCWGG | 2 cut(s) | 431, 642 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 275, 307, 632, 664 |
| AluBI | AGCT | 1 cut(s) | 571 |
| AluI | AGCT | 1 cut(s) | 571 |
| ApoI | RAATTY | 2 cut(s) | 75, 202 |
| AseI | ATTAAT | 1 cut(s) | 156 |
| AspLEI | GCGC | 1 cut(s) | 549 |
| AspS9I | GGNCC | 3 cut(s) | 229, 381, 463 |
| AsuHPI | GGTGA | 1 cut(s) | 620 |
| AvaII | GGWCC | 3 cut(s) | 229, 381, 463 |
| BanII | GRGCYC | 1 cut(s) | 366 |
| BauI | CACGAG | 1 cut(s) | 474 |
| BccI | CCATC | 1 cut(s) | 442 |
| BciT130I | CCWGG | 2 cut(s) | 433, 644 |
| BfaI | CTAG | 1 cut(s) | 611 |
| BfmI | CTRYAG | 1 cut(s) | 618 |
| BfoI | RGCGCY | 1 cut(s) | 550 |
| Bme1390I | CCNGG | 2 cut(s) | 433, 644 |
| Bme18I | GGWCC | 3 cut(s) | 229, 381, 463 |
| BmgT120I | GGNCC | 3 cut(s) | 229, 381, 463 |
| BmiI | GGNNCC | 1 cut(s) | 641 |
| BmrFI | CCNGG | 2 cut(s) | 433, 644 |
| BmsI | GCATC | 2 cut(s) | 129, 623 |
| BpuEI | CTTGAG | 3 cut(s) | 115, 128, 325 |
| BsaHI | GRCGYC | 1 cut(s) | 392 |
| BsaJI | CCNNGG | 3 cut(s) | 37, 432, 635 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 549, 649 |
| Bse1I | ACTGG | 1 cut(s) | 289 |
| BseBI | CCWGG | 2 cut(s) | 433, 644 |
| BseDI | CCNNGG | 3 cut(s) | 37, 432, 635 |
| BseGI | GGATG | 2 cut(s) | 144, 526 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 549, 649 |
| BseNI | ACTGG | 1 cut(s) | 289 |
| BseRI | GAGGAG | 1 cut(s) | 23 |
| BsiSI | CCGG | 1 cut(s) | 550 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 549, 649 |
| Bsp1286I | GDGCHC | 1 cut(s) | 366 |
| Bsp143I | GATC | 2 cut(s) | 12, 58 |
| BspACI | CCGC | 2 cut(s) | 52, 219 |
| BspLI | GGNNCC | 1 cut(s) | 641 |
| BsrI | ACTGG | 1 cut(s) | 289 |
| BssECI | CCNNGG | 3 cut(s) | 37, 432, 635 |
| BssMI | GATC | 2 cut(s) | 12, 58 |
| BssNI | GRCGYC | 1 cut(s) | 392 |
| BssSI | CACGAG | 1 cut(s) | 474 |
| BssT1I | CCWWGG | 2 cut(s) | 37, 635 |
| Bst2BI | CACGAG | 1 cut(s) | 474 |
| Bst2UI | CCWGG | 2 cut(s) | 433, 644 |
| Bst4CI | ACNGT | 1 cut(s) | 424 |
| BstACI | GRCGYC | 1 cut(s) | 392 |
| BstF5I | GGATG | 2 cut(s) | 144, 526 |
| BstH2I | RGCGCY | 1 cut(s) | 550 |
| BstHHI | GCGC | 1 cut(s) | 549 |
| BstKTI | GATC | 2 cut(s) | 15, 61 |
| BstMBI | GATC | 2 cut(s) | 12, 58 |
| BstNI | CCWGG | 2 cut(s) | 433, 644 |
| BstSCI | CCNGG | 2 cut(s) | 431, 642 |
| BstSFI | CTRYAG | 1 cut(s) | 618 |
| BtsCI | GGATG | 2 cut(s) | 144, 526 |
| BtsI | GCAGTG | 1 cut(s) | 666 |
| BtsIMutI | CAGTG | 3 cut(s) | 54, 429, 666 |
| CfoI | GCGC | 1 cut(s) | 549 |
| Cfr13I | GGNCC | 3 cut(s) | 229, 381, 463 |
| CseI | GACGC | 1 cut(s) | 381 |
| Csp6I | GTAC | 3 cut(s) | 46, 279, 671 |
| CviAII | CATG | 5 cut(s) | 233, 317, 367, 378, 504 |
| CviJI | RGCY | 4 cut(s) | 196, 364, 456, 571 |
| CviKI_1 | RGCY | 4 cut(s) | 196, 364, 456, 571 |
| CviQI | GTAC | 3 cut(s) | 46, 279, 671 |
| DpnI | GATC | 2 cut(s) | 14, 60 |
| DpnII | GATC | 2 cut(s) | 12, 58 |
| Eco130I | CCWWGG | 2 cut(s) | 37, 635 |
| Eco24I | GRGCYC | 1 cut(s) | 366 |
| Eco47I | GGWCC | 3 cut(s) | 229, 381, 463 |
| Eco57I | CTGAAG | 3 cut(s) | 316, 519, 725 |
| EcoRII | CCWGG | 2 cut(s) | 431, 642 |
| EcoT14I | CCWWGG | 2 cut(s) | 37, 635 |
| EcoT22I | ATGCAT | 1 cut(s) | 509 |
| EcoT38I | GRGCYC | 1 cut(s) | 366 |
| ErhI | CCWWGG | 2 cut(s) | 37, 635 |
| FaeI | CATG | 5 cut(s) | 236, 320, 370, 381, 507 |
| FatI | CATG | 5 cut(s) | 232, 316, 366, 377, 503 |
| FokI | GGATG | 2 cut(s) | 151, 533 |
| FriOI | GRGCYC | 1 cut(s) | 366 |
| FspBI | CTAG | 1 cut(s) | 611 |
| GlaI | GCGC | 1 cut(s) | 548 |
| HaeII | RGCGCY | 1 cut(s) | 550 |
| HapII | CCGG | 1 cut(s) | 550 |
| HgaI | GACGC | 1 cut(s) | 381 |
| HhaI | GCGC | 1 cut(s) | 549 |
| Hin1I | GRCGYC | 1 cut(s) | 392 |
| Hin1II | CATG | 5 cut(s) | 236, 320, 370, 381, 507 |
| Hin6I | GCGC | 1 cut(s) | 547 |
| HinP1I | GCGC | 1 cut(s) | 547 |
| HincII | GTYRAC | 2 cut(s) | 496, 686 |
| HindII | GTYRAC | 2 cut(s) | 496, 686 |
| HindIII | AAGCTT | 1 cut(s) | 569 |
| HinfI | GANTC | 4 cut(s) | 148, 274, 470, 482 |
| HpaII | CCGG | 1 cut(s) | 550 |
| HphI | GGTGA | 1 cut(s) | 620 |
| Hpy166II | GTNNAC | 2 cut(s) | 496, 686 |
| Hpy188I | TCNGA | 9 cut(s) | 17, 132, 153, 296, 335, 397, 419, 487, 705 |
| Hpy188III | TCNNGA | 2 cut(s) | 145, 304 |
| Hpy8I | GTNNAC | 2 cut(s) | 496, 686 |
| Hpy99I | CGWCG | 1 cut(s) | 397 |
| HpyAV | CCTTC | 2 cut(s) | 314, 382 |
| HpyCH4III | ACNGT | 1 cut(s) | 424 |
| HpyCH4IV | ACGT | 2 cut(s) | 48, 673 |
| HpyCH4V | TGCA | 4 cut(s) | 252, 507, 659, 678 |
| HpySE526I | ACGT | 2 cut(s) | 48, 673 |
| Hsp92I | GRCGYC | 1 cut(s) | 392 |
| Hsp92II | CATG | 5 cut(s) | 236, 320, 370, 381, 507 |
| HspAI | GCGC | 1 cut(s) | 547 |
| Kzo9I | GATC | 2 cut(s) | 12, 58 |
| LpnPI | CCDG | 7 cut(s) | 163, 302, 418, 445, 563, 629, 656 |
| LweI | GCATC | 2 cut(s) | 129, 623 |
| MaeI | CTAG | 1 cut(s) | 611 |
| MaeII | ACGT | 2 cut(s) | 48, 673 |
| MaeIII | GTNAC | 3 cut(s) | 29, 529, 538 |
| MalI | GATC | 2 cut(s) | 14, 60 |
| MboI | GATC | 2 cut(s) | 12, 58 |
| MboII | GAAGA | 2 cut(s) | 322, 449 |
| MhlI | GDGCHC | 1 cut(s) | 366 |
| MluCI | AATT | 5 cut(s) | 75, 202, 690, 699, 719 |
| MmeI | TCCRAC | 3 cut(s) | 93, 375, 397 |
| MnlI | CCTC | 9 cut(s) | 61, 138, 186, 300, 511, 546, 577, 636, 717 |
| Mph1103I | ATGCAT | 1 cut(s) | 509 |
| MseI | TTAA | 1 cut(s) | 156 |
| MspI | CCGG | 1 cut(s) | 550 |
| MspR9I | CCNGG | 2 cut(s) | 433, 644 |
| MvaI | CCWGG | 2 cut(s) | 433, 644 |
| NdeII | GATC | 2 cut(s) | 12, 58 |
| NlaIII | CATG | 5 cut(s) | 236, 320, 370, 381, 507 |
| NlaIV | GGNNCC | 1 cut(s) | 641 |
| NmuCI | GTSAC | 1 cut(s) | 529 |
| NsiI | ATGCAT | 1 cut(s) | 509 |
| PfeI | GAWTC | 4 cut(s) | 148, 274, 470, 482 |
| PflFI | GACNNNGTC | 3 cut(s) | 379, 401, 491 |
| PshBI | ATTAAT | 1 cut(s) | 156 |
| Psp6I | CCWGG | 2 cut(s) | 431, 642 |
| PspGI | CCWGG | 2 cut(s) | 431, 642 |
| PspN4I | GGNNCC | 1 cut(s) | 641 |
| PspPI | GGNCC | 3 cut(s) | 229, 381, 463 |
| PsyI | GACNNNGTC | 3 cut(s) | 379, 401, 491 |
| RsaI | GTAC | 3 cut(s) | 47, 280, 672 |
| RsaNI | GTAC | 3 cut(s) | 46, 279, 671 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| Sau3AI | GATC | 2 cut(s) | 12, 58 |
| Sau96I | GGNCC | 3 cut(s) | 229, 381, 463 |
| ScrFI | CCNGG | 2 cut(s) | 433, 644 |
| SduI | GDGCHC | 1 cut(s) | 366 |
| SetI | ASST | 9 cut(s) | 51, 130, 182, 557, 573, 628, 637, 645, 676 |
| SfaNI | GCATC | 2 cut(s) | 129, 623 |
| SfcI | CTRYAG | 1 cut(s) | 618 |
| SinI | GGWCC | 3 cut(s) | 229, 381, 463 |
| SmlI | CTYRAG | 3 cut(s) | 94, 143, 304 |
| SmoI | CTYRAG | 3 cut(s) | 94, 143, 304 |
| Sse9I | AATT | 5 cut(s) | 75, 202, 690, 699, 719 |
| SsiI | CCGC | 2 cut(s) | 52, 219 |
| SspMI | CTAG | 1 cut(s) | 611 |
| StyD4I | CCNGG | 2 cut(s) | 431, 642 |
| StyI | CCWWGG | 2 cut(s) | 37, 635 |
| TaaI | ACNGT | 1 cut(s) | 424 |
| TaiI | ACGT | 2 cut(s) | 51, 676 |
| TaqI | TCGA | 2 cut(s) | 374, 405 |
| TasI | AATT | 5 cut(s) | 75, 202, 690, 699, 719 |
| TfiI | GAWTC | 4 cut(s) | 148, 274, 470, 482 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TscAI | CASTG | 3 cut(s) | 61, 429, 666 |
| TseFI | GTSAC | 1 cut(s) | 529 |
| Tsp45I | GTSAC | 1 cut(s) | 529 |
| TspDTI | ATGAA | 2 cut(s) | 333, 383 |
| TspGWI | ACGGA | 2 cut(s) | 20, 87 |
| TspRI | CASTG | 3 cut(s) | 61, 429, 666 |
| Tth111I | GACNNNGTC | 3 cut(s) | 379, 401, 491 |
| VpaK11BI | GGWCC | 3 cut(s) | 229, 381, 463 |
| VspI | ATTAAT | 1 cut(s) | 156 |
| XapI | RAATTY | 2 cut(s) | 75, 202 |
| XspI | CTAG | 1 cut(s) | 611 |
| Zsp2I | ATGCAT | 1 cut(s) | 509 |