ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 2 - 54 | 1.5e-10 | Domain of unknown function (DUF4283) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 157 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 21 |
| AccII | CGCG | 1 cut(s) | 348 |
| AciI | CCGC | 2 cut(s) | 53, 346 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 21 |
| AgeI | ACCGGT | 1 cut(s) | 160 |
| AjnI | CCWGG | 1 cut(s) | 468 |
| Alw21I | GWGCWC | 1 cut(s) | 335 |
| ApeKI | GCWGC | 1 cut(s) | 170 |
| AsiGI | ACCGGT | 1 cut(s) | 160 |
| AspLEI | GCGC | 1 cut(s) | 6 |
| AsuHPI | GGTGA | 2 cut(s) | 491, 540 |
| BanI | GGYRCC | 1 cut(s) | 157 |
| BbsI | GAAGAC | 1 cut(s) | 408 |
| Bbv12I | GWGCWC | 1 cut(s) | 335 |
| BbvI | GCAGC | 1 cut(s) | 182 |
| BccI | CCATC | 3 cut(s) | 110, 148, 565 |
| BceAI | ACGGC | 1 cut(s) | 183 |
| BciT130I | CCWGG | 1 cut(s) | 470 |
| BciVI | GTATCC | 1 cut(s) | 353 |
| BfuI | GTATCC | 1 cut(s) | 353 |
| BisI | GCNGC | 1 cut(s) | 171 |
| BlsI | GCNGC | 1 cut(s) | 172 |
| Bme1390I | CCNGG | 1 cut(s) | 470 |
| BmiI | GGNNCC | 3 cut(s) | 123, 159, 504 |
| BmrFI | CCNGG | 1 cut(s) | 470 |
| BmsI | GCATC | 1 cut(s) | 182 |
| BpiI | GAAGAC | 1 cut(s) | 408 |
| BpmI | CTGGAG | 1 cut(s) | 452 |
| BpuEI | CTTGAG | 1 cut(s) | 381 |
| BsaBI | GATNNNNATC | 2 cut(s) | 300, 363 |
| BsaJI | CCNNGG | 2 cut(s) | 125, 233 |
| BsaWI | WCCGGW | 1 cut(s) | 160 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 21 |
| Bse118I | RCCGGY | 1 cut(s) | 160 |
| Bse8I | GATNNNNATC | 2 cut(s) | 300, 363 |
| BseBI | CCWGG | 1 cut(s) | 470 |
| BseDI | CCNNGG | 2 cut(s) | 125, 233 |
| BseGI | GGATG | 3 cut(s) | 173, 364, 478 |
| BseJI | GATNNNNATC | 2 cut(s) | 300, 363 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 21 |
| BseMII | CTCAG | 2 cut(s) | 212, 507 |
| BseXI | GCAGC | 1 cut(s) | 182 |
| Bsh1236I | CGCG | 1 cut(s) | 348 |
| BshNI | GGYRCC | 1 cut(s) | 157 |
| BshTI | ACCGGT | 1 cut(s) | 160 |
| BsiHKAI | GWGCWC | 1 cut(s) | 335 |
| BsiSI | CCGG | 1 cut(s) | 161 |
| BslFI | GGGAC | 1 cut(s) | 287 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 21 |
| BsmFI | GGGAC | 1 cut(s) | 287 |
| Bsp1286I | GDGCHC | 1 cut(s) | 335 |
| Bsp143I | GATC | 1 cut(s) | 301 |
| Bsp19I | CCATGG | 1 cut(s) | 125 |
| BspACI | CCGC | 2 cut(s) | 53, 346 |
| BspCNI | CTCAG | 2 cut(s) | 211, 506 |
| BspFNI | CGCG | 1 cut(s) | 348 |
| BspLI | GGNNCC | 3 cut(s) | 123, 159, 504 |
| BspT107I | GGYRCC | 1 cut(s) | 157 |
| BsrFI | RCCGGY | 1 cut(s) | 160 |
| BssAI | RCCGGY | 1 cut(s) | 160 |
| BssECI | CCNNGG | 2 cut(s) | 125, 233 |
| BssMI | GATC | 1 cut(s) | 301 |
| BssT1I | CCWWGG | 2 cut(s) | 125, 233 |
| Bst2UI | CCWGG | 1 cut(s) | 470 |
| Bst4CI | ACNGT | 2 cut(s) | 323, 391 |
| Bst6I | CTCTTC | 2 cut(s) | 74, 342 |
| BstDEI | CTNAG | 3 cut(s) | 198, 239, 493 |
| BstDSI | CCRYGG | 1 cut(s) | 125 |
| BstF5I | GGATG | 3 cut(s) | 173, 364, 478 |
| BstFNI | CGCG | 1 cut(s) | 348 |
| BstHHI | GCGC | 1 cut(s) | 6 |
| BstKTI | GATC | 1 cut(s) | 304 |
| BstMBI | GATC | 1 cut(s) | 301 |
| BstNI | CCWGG | 1 cut(s) | 470 |
| BstSCI | CCNGG | 1 cut(s) | 468 |
| BstUI | CGCG | 1 cut(s) | 348 |
| BstV1I | GCAGC | 1 cut(s) | 182 |
| BstV2I | GAAGAC | 1 cut(s) | 408 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 476 |
| BsuI | GTATCC | 1 cut(s) | 353 |
| BtgI | CCRYGG | 1 cut(s) | 125 |
| BtsCI | GGATG | 3 cut(s) | 173, 364, 478 |
| BtsIMutI | CAGTG | 1 cut(s) | 291 |
| CfoI | GCGC | 1 cut(s) | 6 |
| Cfr10I | RCCGGY | 1 cut(s) | 160 |
| CspAI | ACCGGT | 1 cut(s) | 160 |
| CviAII | CATG | 2 cut(s) | 126, 218 |
| CviJI | RGCY | 3 cut(s) | 238, 371, 503 |
| CviKI_1 | RGCY | 3 cut(s) | 238, 371, 503 |
| DdeI | CTNAG | 3 cut(s) | 198, 239, 493 |
| DpnI | GATC | 1 cut(s) | 303 |
| DpnII | GATC | 1 cut(s) | 301 |
| Eam1104I | CTCTTC | 2 cut(s) | 74, 342 |
| EarI | CTCTTC | 2 cut(s) | 74, 342 |
| Eco130I | CCWWGG | 2 cut(s) | 125, 233 |
| EcoRII | CCWGG | 1 cut(s) | 468 |
| EcoT14I | CCWWGG | 2 cut(s) | 125, 233 |
| ErhI | CCWWGG | 2 cut(s) | 125, 233 |
| FaeI | CATG | 2 cut(s) | 129, 221 |
| FaqI | GGGAC | 1 cut(s) | 287 |
| FatI | CATG | 2 cut(s) | 125, 217 |
| Fnu4HI | GCNGC | 1 cut(s) | 171 |
| FokI | GGATG | 3 cut(s) | 160, 371, 485 |
| Fsp4HI | GCNGC | 1 cut(s) | 171 |
| GlaI | GCGC | 1 cut(s) | 5 |
| GluI | GCNGC | 1 cut(s) | 171 |
| GsuI | CTGGAG | 1 cut(s) | 452 |
| HapII | CCGG | 1 cut(s) | 161 |
| HhaI | GCGC | 1 cut(s) | 6 |
| Hin1II | CATG | 2 cut(s) | 129, 221 |
| Hin6I | GCGC | 1 cut(s) | 4 |
| HinP1I | GCGC | 1 cut(s) | 4 |
| HincII | GTYRAC | 1 cut(s) | 58 |
| HindII | GTYRAC | 1 cut(s) | 58 |
| HinfI | GANTC | 3 cut(s) | 196, 251, 575 |
| HpaII | CCGG | 1 cut(s) | 161 |
| HphI | GGTGA | 2 cut(s) | 491, 540 |
| Hpy166II | GTNNAC | 2 cut(s) | 58, 291 |
| Hpy188I | TCNGA | 1 cut(s) | 496 |
| Hpy188III | TCNNGA | 5 cut(s) | 113, 305, 328, 356, 398 |
| Hpy8I | GTNNAC | 2 cut(s) | 58, 291 |
| HpyAV | CCTTC | 1 cut(s) | 43 |
| HpyCH4III | ACNGT | 2 cut(s) | 323, 391 |
| HpyCH4IV | ACGT | 1 cut(s) | 265 |
| HpyCH4V | TGCA | 2 cut(s) | 103, 486 |
| HpyF3I | CTNAG | 3 cut(s) | 198, 239, 493 |
| HpySE526I | ACGT | 1 cut(s) | 265 |
| Hsp92II | CATG | 2 cut(s) | 129, 221 |
| HspAI | GCGC | 1 cut(s) | 4 |
| Kzo9I | GATC | 1 cut(s) | 301 |
| LmnI | GCTCC | 2 cut(s) | 330, 508 |
| LpnPI | CCDG | 8 cut(s) | 28, 174, 185, 196, 341, 353, 455, 482 |
| Lsp1109I | GCAGC | 1 cut(s) | 182 |
| LweI | GCATC | 1 cut(s) | 182 |
| MaeII | ACGT | 1 cut(s) | 265 |
| MaeIII | GTNAC | 1 cut(s) | 163 |
| MalI | GATC | 1 cut(s) | 303 |
| MboI | GATC | 1 cut(s) | 301 |
| MboII | GAAGA | 3 cut(s) | 61, 329, 413 |
| MhlI | GDGCHC | 1 cut(s) | 335 |
| MluCI | AATT | 3 cut(s) | 186, 205, 487 |
| MlyI | GAGTC | 2 cut(s) | 190, 260 |
| MnlI | CCTC | 6 cut(s) | 83, 187, 405, 412, 502, 517 |
| MseI | TTAA | 3 cut(s) | 146, 204, 363 |
| MspI | CCGG | 1 cut(s) | 161 |
| MspR9I | CCNGG | 1 cut(s) | 470 |
| MvaI | CCWGG | 1 cut(s) | 470 |
| MvnI | CGCG | 1 cut(s) | 348 |
| NcoI | CCATGG | 1 cut(s) | 125 |
| NdeII | GATC | 1 cut(s) | 301 |
| NlaIII | CATG | 2 cut(s) | 129, 221 |
| NlaIV | GGNNCC | 3 cut(s) | 123, 159, 504 |
| PfeI | GAWTC | 1 cut(s) | 575 |
| PflFI | GACNNNGTC | 1 cut(s) | 250 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 21 |
| PfoI | TCCNGGA | 1 cut(s) | 468 |
| PinAI | ACCGGT | 1 cut(s) | 160 |
| PkrI | GCNGC | 1 cut(s) | 172 |
| PleI | GAGTC | 2 cut(s) | 190, 259 |
| PpsI | GAGTC | 2 cut(s) | 190, 259 |
| Psp6I | CCWGG | 1 cut(s) | 468 |
| PspGI | CCWGG | 1 cut(s) | 468 |
| PspN4I | GGNNCC | 3 cut(s) | 123, 159, 504 |
| PsyI | GACNNNGTC | 1 cut(s) | 250 |
| SaqAI | TTAA | 3 cut(s) | 146, 204, 363 |
| SatI | GCNGC | 1 cut(s) | 171 |
| Sau3AI | GATC | 1 cut(s) | 301 |
| SchI | GAGTC | 2 cut(s) | 190, 260 |
| ScrFI | CCNGG | 1 cut(s) | 470 |
| SduI | GDGCHC | 1 cut(s) | 335 |
| SetI | ASST | 4 cut(s) | 204, 268, 423, 553 |
| SfaNI | GCATC | 1 cut(s) | 182 |
| SmlI | CTYRAG | 1 cut(s) | 396 |
| SmoI | CTYRAG | 1 cut(s) | 396 |
| Sse9I | AATT | 3 cut(s) | 186, 205, 487 |
| SsiI | CCGC | 2 cut(s) | 53, 346 |
| StyD4I | CCNGG | 1 cut(s) | 468 |
| StyI | CCWWGG | 2 cut(s) | 125, 233 |
| TaaI | ACNGT | 2 cut(s) | 323, 391 |
| TaiI | ACGT | 1 cut(s) | 268 |
| TaqII | GACCGA | 2 cut(s) | 263, 272 |
| TasI | AATT | 3 cut(s) | 186, 205, 487 |
| TfiI | GAWTC | 1 cut(s) | 575 |
| Tru1I | TTAA | 3 cut(s) | 146, 204, 363 |
| Tru9I | TTAA | 3 cut(s) | 146, 204, 363 |
| TscAI | CASTG | 1 cut(s) | 298 |
| TseI | GCWGC | 1 cut(s) | 170 |
| TspDTI | ATGAA | 3 cut(s) | 206, 212, 450 |
| TspRI | CASTG | 1 cut(s) | 298 |
| Tth111I | GACNNNGTC | 1 cut(s) | 250 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 21 |