Rroxscaffold_2G00094770

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000022
Physical Location & Seq
Forward (+)
16162309 .. 16176592
14284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094770.1

Sequence Viewer

Length: 1704 bp
ATGGAAGGGGGTCCTACAGTGGGGATGCTTGGACAAATTTGGACTGGGCTAATCGTGTCATCTATCACATCTATCATCATGAATTCAAGTGCTAACTCCGCAGCAGCTTACCCCGCTCCGGCTTCCCAACAGGGACGTTACATCCAGGTGCCGCCTCCAGCCGGCTATCCCACCATGACAGACGATCAGTTGCCCCGAAGCCACGGTCCAGTCGAGACCAAGTCGAAGGGTGATGACTTTTGGAAGGGTTGCTGTGCTGCTCTTTGTTGCTGTTCACAGCTTGTGCACCAGTGGTTAGGGGCCAAGTTTCGTGCAACAGGTCAAGAGGAGGAGGCGACGGAAATCATTCTTCCTAATGGCCCGGAGCAGTGGAGATCTCGTAAGTTTCTACTCGTGGGGCGGCTGTTGACGAGTAAGAAGTATAGCATGGAAGCATTGATCGGGACAATGAAGGCGCTCTGGACACCCAAGAAACATGTGGGGGAGAGAAGTAGGGTGACGGCGGTGGCTCTTGAAGGGAGTGACAGAGTGGTGTTCTCGTTCTCACATGAATATGATCGGAATCGGGTCCTATGGGGCTGTCCTTGGCACTTTAACAAGTCCTTATTTGCGGTGGTGACTAGTGATGGGCTGGATGATCTGCGCCAGATTCCATTAAAGTGGCAATTCTTCTGGATACGGGCCTGGGGTATTCCGCCTCTTTACATGGAGAAGGAGACGGGGGTGAGGATAGGTAATGCGATAGGATGGTTTGTGCGCATGGAGGATCCCGAACATGGAGTTTATCTGGGTACGAGTTTGAAGGTTCGGGTCCTCATTGATACTGATTTACCTTTGCGGAGAGTAGCGCATGTTAGACTCCCAGGGCTGAGTAAGGGCTCGTGTTTCGAGCTTGATTATCTGAAGCTTCCTTTGTTCTGTTATTACTGTGGAGTACTCCATCATGACTCGAACAGTTGTGAGCTTCATCGAAGTGGGGTGATATGCGAAAAACAATTTGATTTCCTACTCTGTGCGGAGAAGAAGGATCGATGGTTGGCGGAGAAGGAAGCTCGTGAGCGGAAGGCAGCGTTGGAAAACCTGGTTCGAAATGGACGACGGTTTGGGATCTTAGACAAAGGTAAGGGCGGGTGGTCGATGCAGGTGCCGGAGTTCCCTCTTTCTGGGATGGTTCGGAATAGGGAGGAATGGGAGGAGTTGGACGGTACGGCGGGTGCTGAAAATGCTATGGACCTTGACCGGGTTTTGACGGAGGGGGACGACGGACGACAACTCAAACGACGCTGCCAGAGGACTGTGGTGGTGGCGGAGTCTTCTTCGGGGCTGTTTCCTTTTCGGGCTCCATGTATTAATGTTGATGGGGATTCTGCGGAGTCATTTAATGAAATTGGTATCTCCAAGGATCTTATTTCGGGTGATATGGAGGTGATGGCGGATAGCCAGCTGGGGTCCAAGATGTTTGGTAGAGAAATTATTATCCCATCTTTTACGGGGGTTGATGAGCAATGTTTAGTGGTAGGTGGGGAGTCCAGGGTGGCTGGGCCACCTGGTTTTGATTTGAATAAACCCAATGATGAAAGGGAGCAAGGGGACCCCACTTCAGTTGAGGTGGCTGCTGGTTTGGACTATTTGGGTCAGAAGAGGGGTACTGGCCTTTTTGATGGGTTGGGAAGTAGTAAGGGGGGTCTGCCGGGGATGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

567

Amino Acids

62.72

Weight (kDa)

6.03

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 56 - 91 2.1e-07 Cysteine-rich TM module stress tolerance
DUF4283 PF14111 128 - 205 1.2e-06 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1132
Acc16I TGCGCA 1 cut(s) 758
Acc36I ACCTGC 1 cut(s) 1132
AccB1I GGYRCC 2 cut(s) 148, 1144
AccBSI CCGCTC 2 cut(s) 116, 1060
AclWI GGATC 5 cut(s) 761, 774, 1035, 1115, 1410
AcsI RAATTY 2 cut(s) 36, 82
AcuI CTGAAG 2 cut(s) 923, 1584
AfaI GTAC 4 cut(s) 793, 936, 1207, 1648
AfiI CCNNNNNNNGG 7 cut(s) 20, 118, 161, 776, 1163, 1240, 1697
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 4 cut(s) 87, 515, 802, 1561
AhlI ACTAGT 1 cut(s) 620
AjnI CCWGG 6 cut(s) 144, 683, 862, 1080, 1529, 1546
AjuI GAANNNNNNNTTGG 2 cut(s) 1055, 1087
AluBI AGCT 7 cut(s) 107, 280, 892, 907, 964, 1052, 1444
AluI AGCT 7 cut(s) 107, 280, 892, 907, 964, 1052, 1444
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 2 cut(s) 209, 710
Alw44I GTGCAC 1 cut(s) 284
AlwI GGATC 5 cut(s) 761, 774, 1035, 1115, 1410
AoxI GGCC 5 cut(s) 300, 358, 681, 1541, 1651
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 6 cut(s) 101, 104, 257, 1067, 1284, 1613
ApoI RAATTY 2 cut(s) 36, 82
ArsI GACNNNNNNTTYG 2 cut(s) 190, 222
AseI ATTAAT 1 cut(s) 1350
Asp700I GAANNNNTTC 1 cut(s) 345
AspLEI GCGC 4 cut(s) 457, 645, 759, 850
AsuC2I CCSGG 3 cut(s) 362, 1241, 1692
AsuHPI GGTGA 7 cut(s) 242, 508, 628, 736, 991, 1427, 1438
AsuII TTCGAA 1 cut(s) 1087
AvaII GGWCC 7 cut(s) 11, 206, 568, 811, 1231, 1449, 1591
BaeGI GKGCMC 1 cut(s) 288
BamHI GGATCC 1 cut(s) 766
BanI GGYRCC 2 cut(s) 148, 1144
BanII GRGCYC 2 cut(s) 881, 1342
BauI CACGAG 3 cut(s) 392, 880, 1053
BbsI GAAGAC 1 cut(s) 1305
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 6 cut(s) 113, 116, 244, 1079, 1271, 1600
BceAI ACGGC 2 cut(s) 516, 1224
BcgI CGANNNNNNTGC 2 cut(s) 1126, 1160
BciT130I CCWGG 6 cut(s) 146, 685, 864, 1082, 1531, 1548
BciVI GTATCC 1 cut(s) 669
BcnI CCSGG 3 cut(s) 362, 1241, 1692
BcoDI GTCTC 2 cut(s) 209, 710
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 458
BfuAI ACCTGC 1 cut(s) 1132
BfuI GTATCC 1 cut(s) 669
BglII AGATCT 1 cut(s) 374
BisI GCNGC 8 cut(s) 102, 105, 152, 258, 401, 1068, 1285, 1614
BlsI GCNGC 8 cut(s) 103, 106, 153, 259, 402, 1069, 1286, 1615
BmcAI AGTACT 1 cut(s) 936
Bme1390I CCNGG 9 cut(s) 146, 362, 685, 864, 1082, 1241, 1531, 1548, 1692
Bme18I GGWCC 7 cut(s) 11, 206, 568, 811, 1231, 1449, 1591
BmrFI CCNGG 9 cut(s) 146, 362, 685, 864, 1082, 1241, 1531, 1548, 1692
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 2 cut(s) 15, 1128
BmuI ACTGGG 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 1305
BpmI CTGGAG 1 cut(s) 141
Bpu14I TTCGAA 1 cut(s) 1087
BpuMI CCSGG 3 cut(s) 362, 1241, 1692
Bsa29I ATCGAT 1 cut(s) 1030
BsaBI GATNNNNATC 1 cut(s) 561
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 8 cut(s) 202, 584, 684, 862, 863, 1398, 1530, 1691
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 7 cut(s) 20, 118, 161, 776, 1163, 1240, 1697
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 4 cut(s) 49, 209, 289, 1654
Bse3DI GCAATG 1 cut(s) 1511
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 6 cut(s) 146, 685, 864, 1082, 1531, 1548
BseCI ATCGAT 1 cut(s) 1030
BseDI CCNNGG 8 cut(s) 202, 584, 684, 862, 863, 1398, 1530, 1691
BseGI GGATG 6 cut(s) 30, 141, 640, 752, 1173, 1701
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 7 cut(s) 20, 118, 161, 776, 1163, 1240, 1697
BseMI GCAATG 1 cut(s) 1511
BseMII CTCAG 1 cut(s) 860
BseNI ACTGG 4 cut(s) 49, 209, 289, 1654
BseRI GAGGAG 3 cut(s) 341, 344, 1208
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 6 cut(s) 113, 116, 244, 1079, 1271, 1600
BseYI CCCAGC 2 cut(s) 1444, 1538
BshFI GGCC 5 cut(s) 302, 360, 683, 1543, 1653
BshNI GGYRCC 2 cut(s) 148, 1144
BshVI ATCGAT 1 cut(s) 1030
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 6 cut(s) 119, 162, 362, 1148, 1240, 1691
BslFI GGGAC 4 cut(s) 147, 457, 1271, 1604
BslI CCNNNNNNNGG 7 cut(s) 20, 118, 161, 776, 1163, 1240, 1697
BsmAI GTCTC 2 cut(s) 209, 710
BsmBI CGTCTC 1 cut(s) 710
BsmFI GGGAC 4 cut(s) 147, 457, 1271, 1604
BsnI GGCC 5 cut(s) 302, 360, 683, 1543, 1653
Bso31I GGTCTC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 1087
Bsp1286I GDGCHC 3 cut(s) 288, 881, 1342
Bsp143I GATC 9 cut(s) 184, 374, 438, 556, 637, 766, 1027, 1107, 1402
BspANI GGCC 5 cut(s) 302, 360, 683, 1543, 1653
BspCNI CTCAG 1 cut(s) 861
BspDI ATCGAT 1 cut(s) 1030
BspHI TCATGA 2 cut(s) 78, 943
BspMI ACCTGC 1 cut(s) 1132
BspPI GGATC 5 cut(s) 761, 774, 1035, 1115, 1410
BspT104I TTCGAA 1 cut(s) 1087
BspT107I GGYRCC 2 cut(s) 148, 1144
BspTNI GGTCTC 1 cut(s) 209
BsrBI CCGCTC 2 cut(s) 116, 1060
BsrDI GCAATG 1 cut(s) 1511
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 4 cut(s) 49, 209, 289, 1654
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 8 cut(s) 202, 584, 684, 862, 863, 1398, 1530, 1691
BssMI GATC 9 cut(s) 184, 374, 438, 556, 637, 766, 1027, 1107, 1402
BssSI CACGAG 3 cut(s) 392, 880, 1053
BssT1I CCWWGG 2 cut(s) 584, 1398
Bst2BI CACGAG 3 cut(s) 392, 880, 1053
Bst2UI CCWGG 6 cut(s) 146, 685, 864, 1082, 1531, 1548
Bst4CI ACNGT 7 cut(s) 19, 206, 929, 956, 1101, 1205, 1297
Bst6I CTCTTC 1 cut(s) 1634
BstBI TTCGAA 1 cut(s) 1087
BstC8I GCNNGC 2 cut(s) 163, 1442
BstDEI CTNAG 2 cut(s) 869, 1111
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 6 cut(s) 30, 141, 640, 752, 1173, 1701
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 4 cut(s) 457, 645, 759, 850
BstKTI GATC 9 cut(s) 187, 377, 441, 559, 640, 769, 1030, 1110, 1405
BstMAI GTCTC 2 cut(s) 209, 710
BstMBI GATC 9 cut(s) 184, 374, 438, 556, 637, 766, 1027, 1107, 1402
BstMWI GCNNNNNNNGC 3 cut(s) 98, 113, 1223
BstNI CCWGG 6 cut(s) 146, 685, 864, 1082, 1531, 1548
BstNSI RCATGY 2 cut(s) 479, 854
BstSCI CCNGG 9 cut(s) 144, 360, 683, 862, 1080, 1239, 1529, 1546, 1690
BstSFI CTRYAG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 288
BstV1I GCAGC 6 cut(s) 113, 116, 244, 1079, 1271, 1600
BstV2I GAAGAC 1 cut(s) 1305
BstX2I RGATCY 4 cut(s) 374, 766, 1107, 1402
BstXI CCANNNNNNTGG 1 cut(s) 660
BstYI RGATCY 4 cut(s) 374, 766, 1107, 1402
Bsu15I ATCGAT 1 cut(s) 1030
BsuI GTATCC 1 cut(s) 669
BsuRI GGCC 5 cut(s) 302, 360, 683, 1543, 1653
BsuTUI ATCGAT 1 cut(s) 1030
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 6 cut(s) 30, 141, 640, 752, 1173, 1701
BtsI GCAGTG 1 cut(s) 374
BtsIMutI CAGTG 3 cut(s) 24, 296, 374
BveI ACCTGC 1 cut(s) 1132
Cac8I GCNNGC 2 cut(s) 163, 1442
CciI TCATGA 2 cut(s) 78, 943
CfoI GCGC 4 cut(s) 457, 645, 759, 850
Cfr10I RCCGGY 1 cut(s) 161
ClaI ATCGAT 1 cut(s) 1030
CseI GACGC 1 cut(s) 1290
CsiI ACCWGGT 2 cut(s) 1080, 1546
Csp6I GTAC 4 cut(s) 792, 935, 1206, 1647
CspCI CAANNNNNGTGG 2 cut(s) 1585, 1620
CviQI GTAC 4 cut(s) 792, 935, 1206, 1647
DdeI CTNAG 2 cut(s) 869, 1111
DpnI GATC 9 cut(s) 186, 376, 440, 558, 639, 768, 1029, 1109, 1404
DpnII GATC 9 cut(s) 184, 374, 438, 556, 637, 766, 1027, 1107, 1402
Eam1104I CTCTTC 1 cut(s) 1634
EarI CTCTTC 1 cut(s) 1634
EciI GGCGGA 4 cut(s) 684, 1055, 1322, 1448
Eco130I CCWWGG 2 cut(s) 584, 1398
Eco24I GRGCYC 2 cut(s) 881, 1342
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 7 cut(s) 11, 206, 568, 811, 1231, 1449, 1591
Eco57I CTGAAG 2 cut(s) 923, 1584
EcoO109I RGGNCCY 4 cut(s) 11, 568, 811, 1591
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 6 cut(s) 144, 683, 862, 1080, 1529, 1546
EcoT14I CCWWGG 2 cut(s) 584, 1398
EcoT38I GRGCYC 2 cut(s) 881, 1342
ErhI CCWWGG 2 cut(s) 584, 1398
Esp3I CGTCTC 1 cut(s) 710
FaqI GGGAC 4 cut(s) 147, 457, 1271, 1604
FauI CCCGC 3 cut(s) 121, 1121, 1204
Fnu4HI GCNGC 8 cut(s) 102, 105, 152, 258, 401, 1068, 1285, 1614
FokI GGATG 5 cut(s) 37, 128, 647, 759, 1180
FriOI GRGCYC 2 cut(s) 881, 1342
Fsp4HI GCNGC 8 cut(s) 102, 105, 152, 258, 401, 1068, 1285, 1614
FspAI RTGCGCAY 1 cut(s) 758
FspBI CTAG 1 cut(s) 621
FspI TGCGCA 1 cut(s) 758
GlaI GCGC 4 cut(s) 456, 644, 758, 849
GluI GCNGC 8 cut(s) 102, 105, 152, 258, 401, 1068, 1285, 1614
GsaI CCCAGC 2 cut(s) 1448, 1542
GsuI CTGGAG 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 5 cut(s) 302, 360, 683, 1543, 1653
HapII CCGG 6 cut(s) 119, 162, 362, 1148, 1240, 1691
HgaI GACGC 1 cut(s) 1290
HhaI GCGC 4 cut(s) 457, 645, 759, 850
Hin6I GCGC 4 cut(s) 455, 643, 757, 848
HinP1I GCGC 4 cut(s) 455, 643, 757, 848
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HindIII AAGCTT 1 cut(s) 905
HinfI GANTC 8 cut(s) 562, 649, 858, 947, 1310, 1364, 1373, 1526
HpaII CCGG 6 cut(s) 119, 162, 362, 1148, 1240, 1691
HphI GGTGA 7 cut(s) 242, 508, 628, 736, 991, 1427, 1438
Hpy166II GTNNAC 3 cut(s) 275, 286, 408
Hpy188I TCNGA 4 cut(s) 561, 903, 1176, 1638
Hpy8I GTNNAC 3 cut(s) 275, 286, 408
Hpy99I CGWCG 4 cut(s) 340, 1101, 1265, 1284
HpyAV CCTTC 9 cut(s) 220, 238, 445, 509, 706, 796, 1018, 1039, 1057
HpyCH4III ACNGT 7 cut(s) 19, 206, 929, 956, 1101, 1205, 1297
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 286, 314, 1141
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 113, 1223
HpyF3I CTNAG 2 cut(s) 869, 1111
HpySE526I ACGT 1 cut(s) 136
HspAI GCGC 4 cut(s) 455, 643, 757, 848
KflI GGGWCCC 1 cut(s) 1591
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Kzo9I GATC 9 cut(s) 184, 374, 438, 556, 637, 766, 1027, 1107, 1402
LmnI GCTCC 4 cut(s) 121, 364, 1345, 1582
Lsp1109I GCAGC 6 cut(s) 113, 116, 244, 1079, 1271, 1600
LweI GCATC 2 cut(s) 15, 1128
MabI ACCWGGT 2 cut(s) 1080, 1546
MaeI CTAG 1 cut(s) 621
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 4 cut(s) 137, 496, 521, 616
MalI GATC 9 cut(s) 186, 376, 440, 558, 639, 768, 1029, 1109, 1404
MbiI CCGCTC 2 cut(s) 116, 1060
MboI GATC 9 cut(s) 184, 374, 438, 556, 637, 766, 1027, 1107, 1402
MboII GAAGA 6 cut(s) 341, 661, 1033, 1305, 1308, 1651
MflI RGATCY 4 cut(s) 374, 766, 1107, 1402
MhlI GDGCHC 3 cut(s) 288, 881, 1342
MluCI AATT 6 cut(s) 36, 82, 665, 995, 1386, 1470
MlyI GAGTC 5 cut(s) 852, 941, 1319, 1382, 1535
MmeI TCCRAC 2 cut(s) 1053, 1179
MroNI GCCGGC 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 4 cut(s) 594, 656, 1350, 1380
MslI CAYNNNNRTG 4 cut(s) 146, 552, 658, 972
MspA1I CMGCKG 1 cut(s) 1444
MspI CCGG 6 cut(s) 119, 162, 362, 1148, 1240, 1691
MspR9I CCNGG 9 cut(s) 146, 362, 685, 864, 1082, 1241, 1531, 1548, 1692
MvaI CCWGG 6 cut(s) 146, 685, 864, 1082, 1531, 1548
MwoI GCNNNNNNNGC 3 cut(s) 98, 113, 1223
NaeI GCCGGC 1 cut(s) 163
NciI CCSGG 3 cut(s) 362, 1241, 1692
NdeII GATC 9 cut(s) 184, 374, 438, 556, 637, 766, 1027, 1107, 1402
NgoMIV GCCGGC 1 cut(s) 161
NmuCI GTSAC 3 cut(s) 496, 521, 616
NsbI TGCGCA 1 cut(s) 758
NspI RCATGY 2 cut(s) 479, 854
NspV TTCGAA 1 cut(s) 1087
PagI TCATGA 2 cut(s) 78, 943
PaqCI CACCTGC 1 cut(s) 1132
PasI CCCWGGG 1 cut(s) 863
PciI ACATGT 1 cut(s) 475
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 1093
PdiI GCCGGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 3 cut(s) 562, 649, 1364
PflFI GACNNNGTC 1 cut(s) 220
PkrI GCNGC 8 cut(s) 103, 106, 153, 259, 402, 1069, 1286, 1615
PleI GAGTC 5 cut(s) 852, 941, 1318, 1381, 1534
PpsI GAGTC 5 cut(s) 852, 941, 1318, 1381, 1534
PpuMI RGGWCCY 4 cut(s) 11, 568, 811, 1591
PscI ACATGT 1 cut(s) 475
PshBI ATTAAT 1 cut(s) 1350
Psp5II RGGWCCY 4 cut(s) 11, 568, 811, 1591
Psp6I CCWGG 6 cut(s) 144, 683, 862, 1080, 1529, 1546
PspFI CCCAGC 2 cut(s) 1444, 1538
PspGI CCWGG 6 cut(s) 144, 683, 862, 1080, 1529, 1546
PspPPI RGGWCCY 4 cut(s) 11, 568, 811, 1591
PsuI RGATCY 4 cut(s) 374, 766, 1107, 1402
PsyI GACNNNGTC 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 1444
RsaI GTAC 4 cut(s) 793, 936, 1207, 1648
RsaNI GTAC 4 cut(s) 792, 935, 1206, 1647
RseI CAYNNNNRTG 4 cut(s) 146, 552, 658, 972
SaqAI TTAA 4 cut(s) 594, 656, 1350, 1380
SatI GCNGC 8 cut(s) 102, 105, 152, 258, 401, 1068, 1285, 1614
Sau3AI GATC 9 cut(s) 184, 374, 438, 556, 637, 766, 1027, 1107, 1402
ScaI AGTACT 1 cut(s) 936
SchI GAGTC 5 cut(s) 852, 941, 1319, 1382, 1535
ScrFI CCNGG 9 cut(s) 146, 362, 685, 864, 1082, 1241, 1531, 1548, 1692
SduI GDGCHC 3 cut(s) 288, 881, 1342
SexAI ACCWGGT 2 cut(s) 1080, 1546
SfaNI GCATC 2 cut(s) 15, 1128
SfcI CTRYAG 1 cut(s) 15
SfuI TTCGAA 1 cut(s) 1087
SinI GGWCC 7 cut(s) 11, 206, 568, 811, 1231, 1449, 1591
SmiMI CAYNNNNRTG 4 cut(s) 146, 552, 658, 972
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 6 cut(s) 36, 82, 665, 995, 1386, 1470
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 9 cut(s) 144, 360, 683, 862, 1080, 1239, 1529, 1546, 1690
StyI CCWWGG 2 cut(s) 584, 1398
TaaI ACNGT 7 cut(s) 19, 206, 929, 956, 1101, 1205, 1297
TaiI ACGT 1 cut(s) 139
TaqI TCGA 8 cut(s) 213, 224, 888, 950, 970, 1030, 1087, 1136
TasI AATT 6 cut(s) 36, 82, 665, 995, 1386, 1470
TatI WGTACW 1 cut(s) 934
TauI GCSGC 2 cut(s) 154, 403
TfiI GAWTC 3 cut(s) 562, 649, 1364
Tru1I TTAA 4 cut(s) 594, 656, 1350, 1380
Tru9I TTAA 4 cut(s) 594, 656, 1350, 1380
TscAI CASTG 3 cut(s) 24, 296, 374
TseFI GTSAC 3 cut(s) 496, 521, 616
TseI GCWGC 6 cut(s) 101, 104, 257, 1067, 1284, 1613
Tsp45I GTSAC 3 cut(s) 496, 521, 616
TspDTI ATGAA 6 cut(s) 95, 464, 564, 956, 1398, 1590
TspGWI ACGGA 3 cut(s) 353, 1265, 1278
TspRI CASTG 3 cut(s) 24, 296, 374
Tth111I GACNNNGTC 1 cut(s) 220
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 7 cut(s) 11, 206, 568, 811, 1231, 1449, 1591
VspI ATTAAT 1 cut(s) 1350
XapI RAATTY 2 cut(s) 36, 82
XceI RCATGY 2 cut(s) 479, 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 1 cut(s) 621
ZrmI AGTACT 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.