Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 31 - 104 | 7.9e-09 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 700 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 682 |
| AccII | CGCG | 1 cut(s) | 203 |
| AciI | CCGC | 2 cut(s) | 203, 589 |
| AclWI | GGATC | 3 cut(s) | 174, 448, 506 |
| AcsI | RAATTY | 1 cut(s) | 757 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 82, 83, 553, 682 |
| AflIII | ACRYGT | 2 cut(s) | 445, 692 |
| AgsI | TTSAA | 4 cut(s) | 68, 163, 238, 714 |
| AjiI | CACGTC | 1 cut(s) | 23 |
| AluBI | AGCT | 2 cut(s) | 543, 640 |
| AluI | AGCT | 2 cut(s) | 543, 640 |
| Alw21I | GWGCWC | 2 cut(s) | 28, 120 |
| Alw26I | GTCTC | 2 cut(s) | 13, 502 |
| AlwI | GGATC | 3 cut(s) | 174, 448, 506 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 317 |
| AoxI | GGCC | 1 cut(s) | 7 |
| ApoI | RAATTY | 1 cut(s) | 757 |
| AspLEI | GCGC | 1 cut(s) | 203 |
| AsuC2I | CCSGG | 2 cut(s) | 548, 626 |
| AsuHPI | GGTGA | 2 cut(s) | 274, 517 |
| BanI | GGYRCC | 1 cut(s) | 700 |
| Bbv12I | GWGCWC | 2 cut(s) | 28, 120 |
| BccI | CCATC | 4 cut(s) | 203, 314, 626, 763 |
| BceAI | ACGGC | 1 cut(s) | 138 |
| BcnI | CCSGG | 2 cut(s) | 548, 626 |
| BcoDI | GTCTC | 2 cut(s) | 13, 502 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| Bme1390I | CCNGG | 2 cut(s) | 548, 626 |
| BmgBI | CACGTC | 1 cut(s) | 23 |
| BmiI | GGNNCC | 2 cut(s) | 386, 702 |
| BmrFI | CCNGG | 2 cut(s) | 548, 626 |
| BmsI | GCATC | 1 cut(s) | 255 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 10, 42 |
| BpmI | CTGGAG | 1 cut(s) | 773 |
| BpuEI | CTTGAG | 1 cut(s) | 355 |
| BpuMI | CCSGG | 2 cut(s) | 548, 626 |
| BsaJI | CCNNGG | 1 cut(s) | 278 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 134, 164 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 82, 83, 553, 682 |
| Bse1I | ACTGG | 1 cut(s) | 756 |
| Bse3DI | GCAATG | 1 cut(s) | 201 |
| BseDI | CCNNGG | 1 cut(s) | 278 |
| BseGI | GGATG | 4 cut(s) | 214, 278, 463, 637 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 82, 83, 553, 682 |
| BseMI | GCAATG | 1 cut(s) | 201 |
| BseMII | CTCAG | 2 cut(s) | 696, 756 |
| BseNI | ACTGG | 1 cut(s) | 756 |
| BseRI | GAGGAG | 1 cut(s) | 381 |
| Bsh1236I | CGCG | 1 cut(s) | 203 |
| BshFI | GGCC | 1 cut(s) | 9 |
| BshNI | GGYRCC | 1 cut(s) | 700 |
| BsiHKAI | GWGCWC | 2 cut(s) | 28, 120 |
| BsiSI | CCGG | 3 cut(s) | 548, 625, 664 |
| BslFI | GGGAC | 2 cut(s) | 658, 736 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 82, 83, 553, 682 |
| BsmAI | GTCTC | 2 cut(s) | 13, 502 |
| BsmBI | CGTCTC | 1 cut(s) | 13 |
| BsmFI | GGGAC | 2 cut(s) | 658, 736 |
| BsnI | GGCC | 1 cut(s) | 9 |
| Bsp1286I | GDGCHC | 2 cut(s) | 28, 120 |
| Bsp143I | GATC | 5 cut(s) | 11, 166, 440, 498, 778 |
| Bsp19I | CCATGG | 1 cut(s) | 278 |
| BspACI | CCGC | 2 cut(s) | 203, 589 |
| BspANI | GGCC | 1 cut(s) | 9 |
| BspCNI | CTCAG | 2 cut(s) | 697, 757 |
| BspFNI | CGCG | 1 cut(s) | 203 |
| BspLI | GGNNCC | 2 cut(s) | 386, 702 |
| BspMAI | CTGCAG | 1 cut(s) | 37 |
| BspPI | GGATC | 3 cut(s) | 174, 448, 506 |
| BspT107I | GGYRCC | 1 cut(s) | 700 |
| BsrDI | GCAATG | 1 cut(s) | 201 |
| BsrI | ACTGG | 1 cut(s) | 756 |
| BssECI | CCNNGG | 1 cut(s) | 278 |
| BssMI | GATC | 5 cut(s) | 11, 166, 440, 498, 778 |
| BssT1I | CCWWGG | 1 cut(s) | 278 |
| Bst4CI | ACNGT | 4 cut(s) | 434, 601, 719, 727 |
| Bst6I | CTCTTC | 1 cut(s) | 39 |
| BstC8I | GCNNGC | 1 cut(s) | 7 |
| BstDEI | CTNAG | 2 cut(s) | 705, 765 |
| BstDSI | CCRYGG | 1 cut(s) | 278 |
| BstF5I | GGATG | 4 cut(s) | 214, 278, 463, 637 |
| BstFNI | CGCG | 1 cut(s) | 203 |
| BstHHI | GCGC | 1 cut(s) | 203 |
| BstKTI | GATC | 5 cut(s) | 14, 169, 443, 501, 781 |
| BstMAI | GTCTC | 2 cut(s) | 13, 502 |
| BstMBI | GATC | 5 cut(s) | 11, 166, 440, 498, 778 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 32, 200 |
| BstNSI | RCATGY | 2 cut(s) | 449, 696 |
| BstSCI | CCNGG | 2 cut(s) | 546, 624 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstUI | CGCG | 1 cut(s) | 203 |
| BstX2I | RGATCY | 2 cut(s) | 166, 778 |
| BstYI | RGATCY | 2 cut(s) | 166, 778 |
| BsuRI | GGCC | 1 cut(s) | 9 |
| BtgI | CCRYGG | 1 cut(s) | 278 |
| BtrI | CACGTC | 1 cut(s) | 23 |
| BtsCI | GGATG | 4 cut(s) | 214, 278, 463, 637 |
| BtsI | GCAGTG | 1 cut(s) | 318 |
| BtsIMutI | CAGTG | 3 cut(s) | 318, 724, 732 |
| Cac8I | GCNNGC | 1 cut(s) | 7 |
| CaiI | CAGNNNCTG | 1 cut(s) | 317 |
| CfoI | GCGC | 1 cut(s) | 203 |
| CviAII | CATG | 4 cut(s) | 279, 446, 563, 693 |
| CviJI | RGCY | 9 cut(s) | 9, 146, 213, 234, 385, 543, 582, 640, 687 |
| CviKI_1 | RGCY | 9 cut(s) | 9, 146, 213, 234, 385, 543, 582, 640, 687 |
| DdeI | CTNAG | 2 cut(s) | 705, 765 |
| DpnI | GATC | 5 cut(s) | 13, 168, 442, 500, 780 |
| DpnII | GATC | 5 cut(s) | 11, 166, 440, 498, 778 |
| Eam1104I | CTCTTC | 1 cut(s) | 39 |
| EarI | CTCTTC | 1 cut(s) | 39 |
| Eco130I | CCWWGG | 1 cut(s) | 278 |
| EcoT14I | CCWWGG | 1 cut(s) | 278 |
| ErhI | CCWWGG | 1 cut(s) | 278 |
| Esp3I | CGTCTC | 1 cut(s) | 13 |
| FaeI | CATG | 4 cut(s) | 282, 449, 566, 696 |
| FaqI | GGGAC | 2 cut(s) | 658, 736 |
| FatI | CATG | 4 cut(s) | 278, 445, 562, 692 |
| FokI | GGATG | 4 cut(s) | 221, 285, 470, 644 |
| GlaI | GCGC | 1 cut(s) | 202 |
| GsuI | CTGGAG | 1 cut(s) | 773 |
| HaeIII | GGCC | 1 cut(s) | 9 |
| HapII | CCGG | 3 cut(s) | 548, 625, 664 |
| HhaI | GCGC | 1 cut(s) | 203 |
| Hin1II | CATG | 4 cut(s) | 282, 449, 566, 696 |
| Hin6I | GCGC | 1 cut(s) | 201 |
| HinP1I | GCGC | 1 cut(s) | 201 |
| HinfI | GANTC | 4 cut(s) | 94, 356, 660, 671 |
| HpaII | CCGG | 3 cut(s) | 548, 625, 664 |
| HphI | GGTGA | 2 cut(s) | 274, 517 |
| Hpy188I | TCNGA | 4 cut(s) | 217, 244, 331, 380 |
| Hpy188III | TCNNGA | 2 cut(s) | 451, 764 |
| HpyAV | CCTTC | 3 cut(s) | 157, 375, 547 |
| HpyCH4III | ACNGT | 4 cut(s) | 434, 601, 719, 727 |
| HpyCH4IV | ACGT | 1 cut(s) | 22 |
| HpyCH4V | TGCA | 4 cut(s) | 35, 194, 268, 746 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 32, 200 |
| HpyF3I | CTNAG | 2 cut(s) | 705, 765 |
| HpySE526I | ACGT | 1 cut(s) | 22 |
| Hsp92II | CATG | 4 cut(s) | 282, 449, 566, 696 |
| HspAI | GCGC | 1 cut(s) | 201 |
| Kzo9I | GATC | 5 cut(s) | 11, 166, 440, 498, 778 |
| LmnI | GCTCC | 2 cut(s) | 390, 772 |
| LweI | GCATC | 1 cut(s) | 255 |
| MaeII | ACGT | 1 cut(s) | 22 |
| MaeIII | GTNAC | 1 cut(s) | 313 |
| MalI | GATC | 5 cut(s) | 13, 168, 442, 500, 780 |
| MboI | GATC | 5 cut(s) | 11, 166, 440, 498, 778 |
| MboII | GAAGA | 1 cut(s) | 56 |
| MflI | RGATCY | 2 cut(s) | 166, 778 |
| MhlI | GDGCHC | 2 cut(s) | 28, 120 |
| MluCI | AATT | 4 cut(s) | 238, 245, 423, 757 |
| MlyI | GAGTC | 3 cut(s) | 103, 654, 680 |
| MmeI | TCCRAC | 1 cut(s) | 88 |
| MseI | TTAA | 4 cut(s) | 153, 402, 513, 642 |
| MspI | CCGG | 3 cut(s) | 548, 625, 664 |
| MspR9I | CCNGG | 2 cut(s) | 548, 626 |
| MvnI | CGCG | 1 cut(s) | 203 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 32, 200 |
| NciI | CCSGG | 2 cut(s) | 548, 626 |
| NcoI | CCATGG | 1 cut(s) | 278 |
| NdeII | GATC | 5 cut(s) | 11, 166, 440, 498, 778 |
| NlaIII | CATG | 4 cut(s) | 282, 449, 566, 696 |
| NlaIV | GGNNCC | 2 cut(s) | 386, 702 |
| NmuCI | GTSAC | 1 cut(s) | 313 |
| NspI | RCATGY | 2 cut(s) | 449, 696 |
| PciI | ACATGT | 2 cut(s) | 445, 692 |
| PfeI | GAWTC | 1 cut(s) | 356 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 682 |
| PleI | GAGTC | 3 cut(s) | 102, 654, 679 |
| PpsI | GAGTC | 3 cut(s) | 102, 654, 679 |
| PscI | ACATGT | 2 cut(s) | 445, 692 |
| PspN4I | GGNNCC | 2 cut(s) | 386, 702 |
| PstI | CTGCAG | 1 cut(s) | 37 |
| PstNI | CAGNNNCTG | 1 cut(s) | 317 |
| PsuI | RGATCY | 2 cut(s) | 166, 778 |
| SaqAI | TTAA | 4 cut(s) | 153, 402, 513, 642 |
| Sau3AI | GATC | 5 cut(s) | 11, 166, 440, 498, 778 |
| SchI | GAGTC | 3 cut(s) | 103, 654, 680 |
| ScrFI | CCNGG | 2 cut(s) | 548, 626 |
| SduI | GDGCHC | 2 cut(s) | 28, 120 |
| SfaNI | GCATC | 1 cut(s) | 255 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SmlI | CTYRAG | 1 cut(s) | 334 |
| SmoI | CTYRAG | 1 cut(s) | 334 |
| Sse9I | AATT | 4 cut(s) | 238, 245, 423, 757 |
| SsiI | CCGC | 2 cut(s) | 203, 589 |
| StyD4I | CCNGG | 2 cut(s) | 546, 624 |
| StyI | CCWWGG | 1 cut(s) | 278 |
| TaaI | ACNGT | 4 cut(s) | 434, 601, 719, 727 |
| TaiI | ACGT | 1 cut(s) | 25 |
| TasI | AATT | 4 cut(s) | 238, 245, 423, 757 |
| TfiI | GAWTC | 1 cut(s) | 356 |
| Tru1I | TTAA | 4 cut(s) | 153, 402, 513, 642 |
| Tru9I | TTAA | 4 cut(s) | 153, 402, 513, 642 |
| TscAI | CASTG | 3 cut(s) | 318, 724, 732 |
| TseFI | GTSAC | 1 cut(s) | 313 |
| Tsp45I | GTSAC | 1 cut(s) | 313 |
| TspDTI | ATGAA | 1 cut(s) | 579 |
| TspGWI | ACGGA | 2 cut(s) | 470, 596 |
| TspRI | CASTG | 3 cut(s) | 318, 724, 732 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 682 |
| XapI | RAATTY | 1 cut(s) | 757 |
| XceI | RCATGY | 2 cut(s) | 449, 696 |