Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 118 - 166 | 5.9e-07 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 643 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 533 |
| AccBSI | CCGCTC | 1 cut(s) | 1051 |
| AccI | GTMKAC | 1 cut(s) | 977 |
| AciI | CCGC | 3 cut(s) | 230, 803, 1049 |
| AclWI | GGATC | 6 cut(s) | 71, 167, 180, 363, 657, 822 |
| AcsI | RAATTY | 2 cut(s) | 225, 829 |
| AcuI | CTGAAG | 1 cut(s) | 380 |
| AfaI | GTAC | 2 cut(s) | 771, 966 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 533, 653 |
| AgsI | TTSAA | 1 cut(s) | 1019 |
| AluBI | AGCT | 3 cut(s) | 203, 420, 910 |
| AluI | AGCT | 3 cut(s) | 203, 420, 910 |
| Alw26I | GTCTC | 2 cut(s) | 294, 396 |
| AlwI | GGATC | 6 cut(s) | 71, 167, 180, 363, 657, 822 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 986 |
| Ama87I | CYCGRG | 1 cut(s) | 872 |
| AoxI | GGCC | 3 cut(s) | 785, 893, 932 |
| ApeKI | GCWGC | 3 cut(s) | 139, 217, 776 |
| ApoI | RAATTY | 2 cut(s) | 225, 829 |
| AspA2I | CCTAGG | 1 cut(s) | 1064 |
| AspS9I | GGNCC | 2 cut(s) | 894, 932 |
| AsuHPI | GGTGA | 2 cut(s) | 646, 755 |
| AvaI | CYCGRG | 1 cut(s) | 872 |
| AvrII | CCTAGG | 1 cut(s) | 1064 |
| AxyI | CCTNAGG | 1 cut(s) | 371 |
| BamHI | GGATCC | 1 cut(s) | 172 |
| BanI | GGYRCC | 1 cut(s) | 643 |
| BauI | CACGAG | 1 cut(s) | 1052 |
| BbsI | GAAGAC | 1 cut(s) | 1076 |
| BbvI | GCAGC | 3 cut(s) | 126, 204, 788 |
| BccI | CCATC | 5 cut(s) | 155, 247, 725, 757, 1035 |
| BclI | TGATCA | 2 cut(s) | 130, 516 |
| BcoDI | GTCTC | 2 cut(s) | 294, 396 |
| BfaI | CTAG | 3 cut(s) | 653, 711, 1065 |
| BfmI | CTRYAG | 3 cut(s) | 978, 993, 1038 |
| BisI | GCNGC | 4 cut(s) | 140, 218, 777, 804 |
| BlnI | CCTAGG | 1 cut(s) | 1064 |
| BlpI | GCTNAGC | 1 cut(s) | 258 |
| BlsI | GCNGC | 4 cut(s) | 141, 219, 778, 805 |
| BmeT110I | CYCGRG | 1 cut(s) | 872 |
| BmgT120I | GGNCC | 2 cut(s) | 894, 932 |
| BmiI | GGNNCC | 4 cut(s) | 174, 186, 525, 645 |
| BmsI | GCATC | 1 cut(s) | 1000 |
| BpiI | GAAGAC | 1 cut(s) | 1076 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 258 |
| Bsa29I | ATCGAT | 1 cut(s) | 555 |
| BsaBI | GATNNNNATC | 1 cut(s) | 573 |
| BsaJI | CCNNGG | 4 cut(s) | 119, 788, 890, 1064 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1030, 1060 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 533, 653 |
| Bse118I | RCCGGY | 1 cut(s) | 772 |
| Bse1I | ACTGG | 1 cut(s) | 598 |
| Bse21I | CCTNAGG | 1 cut(s) | 371 |
| Bse8I | GATNNNNATC | 1 cut(s) | 573 |
| BseCI | ATCGAT | 1 cut(s) | 555 |
| BseDI | CCNNGG | 4 cut(s) | 119, 788, 890, 1064 |
| BseGI | GGATG | 3 cut(s) | 31, 166, 859 |
| BseJI | GATNNNNATC | 1 cut(s) | 573 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 533, 653 |
| BseMII | CTCAG | 3 cut(s) | 249, 349, 385 |
| BseNI | ACTGG | 1 cut(s) | 598 |
| BseXI | GCAGC | 3 cut(s) | 126, 204, 788 |
| BshFI | GGCC | 3 cut(s) | 787, 895, 934 |
| BshNI | GGYRCC | 1 cut(s) | 643 |
| BshVI | ATCGAT | 1 cut(s) | 555 |
| BsiHKCI | CYCGRG | 1 cut(s) | 872 |
| BsiSI | CCGG | 2 cut(s) | 647, 773 |
| BslFI | GGGAC | 1 cut(s) | 1142 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 533, 653 |
| BsmAI | GTCTC | 2 cut(s) | 294, 396 |
| BsmFI | GGGAC | 1 cut(s) | 1142 |
| BsnI | GGCC | 3 cut(s) | 787, 895, 934 |
| BsoBI | CYCGRG | 1 cut(s) | 872 |
| Bsp143I | GATC | 8 cut(s) | 58, 63, 130, 172, 355, 516, 649, 814 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 258 |
| Bsp19I | CCATGG | 1 cut(s) | 119 |
| BspACI | CCGC | 3 cut(s) | 230, 803, 1049 |
| BspANI | GGCC | 3 cut(s) | 787, 895, 934 |
| BspCNI | CTCAG | 3 cut(s) | 250, 348, 384 |
| BspDI | ATCGAT | 1 cut(s) | 555 |
| BspLI | GGNNCC | 4 cut(s) | 174, 186, 525, 645 |
| BspPI | GGATC | 6 cut(s) | 71, 167, 180, 363, 657, 822 |
| BspT107I | GGYRCC | 1 cut(s) | 643 |
| BsrBI | CCGCTC | 1 cut(s) | 1051 |
| BsrFI | RCCGGY | 1 cut(s) | 772 |
| BsrI | ACTGG | 1 cut(s) | 598 |
| BssAI | RCCGGY | 1 cut(s) | 772 |
| BssECI | CCNNGG | 4 cut(s) | 119, 788, 890, 1064 |
| BssMI | GATC | 8 cut(s) | 58, 63, 130, 172, 355, 516, 649, 814 |
| BssSI | CACGAG | 1 cut(s) | 1052 |
| BssT1I | CCWWGG | 2 cut(s) | 119, 1064 |
| Bst2BI | CACGAG | 1 cut(s) | 1052 |
| BstC8I | GCNNGC | 4 cut(s) | 234, 414, 418, 808 |
| BstDEI | CTNAG | 3 cut(s) | 258, 335, 371 |
| BstDSI | CCRYGG | 1 cut(s) | 119 |
| BstF5I | GGATG | 3 cut(s) | 31, 166, 859 |
| BstKTI | GATC | 8 cut(s) | 61, 66, 133, 175, 358, 519, 652, 817 |
| BstMAI | GTCTC | 2 cut(s) | 294, 396 |
| BstMBI | GATC | 8 cut(s) | 58, 63, 130, 172, 355, 516, 649, 814 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 773 |
| BstNSI | RCATGY | 1 cut(s) | 810 |
| BstSFI | CTRYAG | 3 cut(s) | 978, 993, 1038 |
| BstV1I | GCAGC | 3 cut(s) | 126, 204, 788 |
| BstV2I | GAAGAC | 1 cut(s) | 1076 |
| BstX2I | RGATCY | 4 cut(s) | 172, 355, 649, 814 |
| BstYI | RGATCY | 4 cut(s) | 172, 355, 649, 814 |
| Bsu15I | ATCGAT | 1 cut(s) | 555 |
| Bsu36I | CCTNAGG | 1 cut(s) | 371 |
| BsuRI | GGCC | 3 cut(s) | 787, 895, 934 |
| BsuTUI | ATCGAT | 1 cut(s) | 555 |
| BtgI | CCRYGG | 1 cut(s) | 119 |
| BtgZI | GCGATG | 1 cut(s) | 330 |
| BtsCI | GGATG | 3 cut(s) | 31, 166, 859 |
| BtsI | GCAGTG | 1 cut(s) | 721 |
| BtsIMutI | CAGTG | 3 cut(s) | 50, 591, 721 |
| Cac8I | GCNNGC | 4 cut(s) | 234, 414, 418, 808 |
| CaiI | CAGNNNCTG | 1 cut(s) | 986 |
| Cfr10I | RCCGGY | 1 cut(s) | 772 |
| Cfr13I | GGNCC | 2 cut(s) | 894, 932 |
| ClaI | ATCGAT | 1 cut(s) | 555 |
| Csp6I | GTAC | 2 cut(s) | 770, 965 |
| CviAII | CATG | 8 cut(s) | 120, 134, 221, 479, 807, 811, 917, 936 |
| CviQI | GTAC | 2 cut(s) | 770, 965 |
| DdeI | CTNAG | 3 cut(s) | 258, 335, 371 |
| DpnI | GATC | 8 cut(s) | 60, 65, 132, 174, 357, 518, 651, 816 |
| DpnII | GATC | 8 cut(s) | 58, 63, 130, 172, 355, 516, 649, 814 |
| EciI | GGCGGA | 1 cut(s) | 219 |
| Eco130I | CCWWGG | 2 cut(s) | 119, 1064 |
| Eco32I | GATATC | 1 cut(s) | 571 |
| Eco57I | CTGAAG | 1 cut(s) | 380 |
| Eco81I | CCTNAGG | 1 cut(s) | 371 |
| Eco88I | CYCGRG | 1 cut(s) | 872 |
| EcoRI | GAATTC | 1 cut(s) | 225 |
| EcoRV | GATATC | 1 cut(s) | 571 |
| EcoT14I | CCWWGG | 2 cut(s) | 119, 1064 |
| EcoT22I | ATGCAT | 2 cut(s) | 812, 840 |
| ErhI | CCWWGG | 2 cut(s) | 119, 1064 |
| FaeI | CATG | 8 cut(s) | 123, 137, 224, 482, 810, 814, 920, 939 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 409, 441 |
| FaqI | GGGAC | 1 cut(s) | 1142 |
| FatI | CATG | 8 cut(s) | 119, 133, 220, 478, 806, 810, 916, 935 |
| FbaI | TGATCA | 2 cut(s) | 130, 516 |
| FblI | GTMKAC | 1 cut(s) | 977 |
| Fnu4HI | GCNGC | 4 cut(s) | 140, 218, 777, 804 |
| FokI | GGATG | 3 cut(s) | 38, 173, 866 |
| Fsp4HI | GCNGC | 4 cut(s) | 140, 218, 777, 804 |
| FspBI | CTAG | 3 cut(s) | 653, 711, 1065 |
| GluI | GCNGC | 4 cut(s) | 140, 218, 777, 804 |
| HaeIII | GGCC | 3 cut(s) | 787, 895, 934 |
| HapII | CCGG | 2 cut(s) | 647, 773 |
| Hin1II | CATG | 8 cut(s) | 123, 137, 224, 482, 810, 814, 920, 939 |
| HindIII | AAGCTT | 2 cut(s) | 201, 908 |
| HinfI | GANTC | 8 cut(s) | 264, 339, 475, 755, 821, 845, 983, 1103 |
| HpaII | CCGG | 2 cut(s) | 647, 773 |
| HphI | GGTGA | 2 cut(s) | 646, 755 |
| Hpy166II | GTNNAC | 2 cut(s) | 887, 978 |
| Hpy188III | TCNNGA | 7 cut(s) | 23, 208, 268, 293, 373, 818, 1016 |
| Hpy8I | GTNNAC | 2 cut(s) | 887, 978 |
| Hpy99I | CGWCG | 1 cut(s) | 681 |
| HpyAV | CCTTC | 5 cut(s) | 93, 373, 627, 791, 1090 |
| HpyCH4IV | ACGT | 1 cut(s) | 529 |
| HpyCH4V | TGCA | 4 cut(s) | 220, 694, 810, 838 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 773 |
| HpyF3I | CTNAG | 3 cut(s) | 258, 335, 371 |
| HpySE526I | ACGT | 1 cut(s) | 529 |
| Hsp92II | CATG | 8 cut(s) | 123, 137, 224, 482, 810, 814, 920, 939 |
| Ksp22I | TGATCA | 2 cut(s) | 130, 516 |
| Kzo9I | GATC | 8 cut(s) | 58, 63, 130, 172, 355, 516, 649, 814 |
| LmnI | GCTCC | 1 cut(s) | 523 |
| Lsp1109I | GCAGC | 3 cut(s) | 126, 204, 788 |
| LweI | GCATC | 1 cut(s) | 1000 |
| MaeI | CTAG | 3 cut(s) | 653, 711, 1065 |
| MaeII | ACGT | 1 cut(s) | 529 |
| MaeIII | GTNAC | 1 cut(s) | 634 |
| MalI | GATC | 8 cut(s) | 60, 65, 132, 174, 357, 518, 651, 816 |
| MbiI | CCGCTC | 1 cut(s) | 1051 |
| MboI | GATC | 8 cut(s) | 58, 63, 130, 172, 355, 516, 649, 814 |
| MboII | GAAGA | 3 cut(s) | 108, 388, 1081 |
| MflI | RGATCY | 4 cut(s) | 172, 355, 649, 814 |
| MluCI | AATT | 4 cut(s) | 52, 225, 668, 829 |
| MlyI | GAGTC | 4 cut(s) | 333, 484, 764, 992 |
| MmeI | TCCRAC | 3 cut(s) | 732, 738, 774 |
| MnlI | CCTC | 8 cut(s) | 264, 302, 380, 531, 783, 871, 885, 1056 |
| Mph1103I | ATGCAT | 2 cut(s) | 812, 840 |
| MseI | TTAA | 7 cut(s) | 107, 242, 833, 861, 912, 924, 1032 |
| MspI | CCGG | 2 cut(s) | 647, 773 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 773 |
| NcoI | CCATGG | 1 cut(s) | 119 |
| NdeII | GATC | 8 cut(s) | 58, 63, 130, 172, 355, 516, 649, 814 |
| NlaIII | CATG | 8 cut(s) | 123, 137, 224, 482, 810, 814, 920, 939 |
| NlaIV | GGNNCC | 4 cut(s) | 174, 186, 525, 645 |
| NmeAIII | GCCGAG | 1 cut(s) | 813 |
| NmuCI | GTSAC | 1 cut(s) | 634 |
| NsiI | ATGCAT | 2 cut(s) | 812, 840 |
| NspI | RCATGY | 1 cut(s) | 810 |
| PaeI | GCATGC | 1 cut(s) | 810 |
| PfeI | GAWTC | 4 cut(s) | 264, 821, 845, 1103 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 533 |
| PkrI | GCNGC | 4 cut(s) | 141, 219, 778, 805 |
| PleI | GAGTC | 4 cut(s) | 333, 483, 763, 991 |
| PpsI | GAGTC | 4 cut(s) | 333, 483, 763, 991 |
| PspN4I | GGNNCC | 4 cut(s) | 174, 186, 525, 645 |
| PspPI | GGNCC | 2 cut(s) | 894, 932 |
| PstNI | CAGNNNCTG | 1 cut(s) | 986 |
| PsuI | RGATCY | 4 cut(s) | 172, 355, 649, 814 |
| RsaI | GTAC | 2 cut(s) | 771, 966 |
| RsaNI | GTAC | 2 cut(s) | 770, 965 |
| SaqAI | TTAA | 7 cut(s) | 107, 242, 833, 861, 912, 924, 1032 |
| SatI | GCNGC | 4 cut(s) | 140, 218, 777, 804 |
| Sau3AI | GATC | 8 cut(s) | 58, 63, 130, 172, 355, 516, 649, 814 |
| Sau96I | GGNCC | 2 cut(s) | 894, 932 |
| SchI | GAGTC | 4 cut(s) | 333, 484, 764, 992 |
| SfaNI | GCATC | 1 cut(s) | 1000 |
| SfcI | CTRYAG | 3 cut(s) | 978, 993, 1038 |
| SphI | GCATGC | 1 cut(s) | 810 |
| Sse9I | AATT | 4 cut(s) | 52, 225, 668, 829 |
| SsiI | CCGC | 3 cut(s) | 230, 803, 1049 |
| SspMI | CTAG | 3 cut(s) | 653, 711, 1065 |
| StyI | CCWWGG | 2 cut(s) | 119, 1064 |
| TaiI | ACGT | 1 cut(s) | 532 |
| TaqI | TCGA | 2 cut(s) | 267, 555 |
| TasI | AATT | 4 cut(s) | 52, 225, 668, 829 |
| TauI | GCSGC | 1 cut(s) | 806 |
| TfiI | GAWTC | 4 cut(s) | 264, 821, 845, 1103 |
| Tru1I | TTAA | 7 cut(s) | 107, 242, 833, 861, 912, 924, 1032 |
| Tru9I | TTAA | 7 cut(s) | 107, 242, 833, 861, 912, 924, 1032 |
| TscAI | CASTG | 3 cut(s) | 50, 598, 721 |
| TseFI | GTSAC | 1 cut(s) | 634 |
| TseI | GCWGC | 3 cut(s) | 139, 217, 776 |
| Tsp45I | GTSAC | 1 cut(s) | 634 |
| TspDTI | ATGAA | 3 cut(s) | 42, 699, 842 |
| TspRI | CASTG | 3 cut(s) | 50, 598, 721 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 533 |
| XapI | RAATTY | 2 cut(s) | 225, 829 |
| XceI | RCATGY | 1 cut(s) | 810 |
| XmaJI | CCTAGG | 1 cut(s) | 1064 |
| XmiI | GTMKAC | 1 cut(s) | 977 |
| XspI | CTAG | 3 cut(s) | 653, 711, 1065 |
| Zsp2I | ATGCAT | 2 cut(s) | 812, 840 |