Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 307, 540, 547, 671 |
| AclWI | GGATC | 8 cut(s) | 50, 104, 260, 273, 298, 311, 405, 681 |
| AcuI | CTGAAG | 1 cut(s) | 99 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 64, 178, 203, 313, 494, 611, 628 |
| AflII | CTTAAG | 1 cut(s) | 428 |
| AflIII | ACRYGT | 1 cut(s) | 381 |
| AgeI | ACCGGT | 1 cut(s) | 347 |
| AgsI | TTSAA | 2 cut(s) | 190, 274 |
| AluBI | AGCT | 1 cut(s) | 665 |
| AluI | AGCT | 1 cut(s) | 665 |
| Alw21I | GWGCWC | 1 cut(s) | 389 |
| Alw26I | GTCTC | 2 cut(s) | 56, 338 |
| Alw44I | GTGCAC | 1 cut(s) | 385 |
| AlwI | GGATC | 8 cut(s) | 50, 104, 260, 273, 298, 311, 405, 681 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 251 |
| AoxI | GGCC | 3 cut(s) | 99, 194, 630 |
| ApaLI | GTGCAC | 1 cut(s) | 385 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 183, 215 |
| AsiGI | ACCGGT | 1 cut(s) | 347 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 651 |
| AspA2I | CCTAGG | 1 cut(s) | 575 |
| AspLEI | GCGC | 1 cut(s) | 595 |
| AspS9I | GGNCC | 2 cut(s) | 619, 630 |
| AsuHPI | GGTGA | 2 cut(s) | 362, 509 |
| AvaII | GGWCC | 1 cut(s) | 619 |
| AvrII | CCTAGG | 1 cut(s) | 575 |
| BaeGI | GKGCMC | 1 cut(s) | 389 |
| BamHI | GGATCC | 2 cut(s) | 265, 303 |
| BauI | CACGAG | 1 cut(s) | 88 |
| BbsI | GAAGAC | 1 cut(s) | 311 |
| Bbv12I | GWGCWC | 1 cut(s) | 389 |
| BccI | CCATC | 2 cut(s) | 58, 248 |
| BcoDI | GTCTC | 2 cut(s) | 56, 338 |
| BfaI | CTAG | 3 cut(s) | 525, 576, 627 |
| BfrI | CTTAAG | 1 cut(s) | 428 |
| BlnI | CCTAGG | 1 cut(s) | 575 |
| Bme18I | GGWCC | 1 cut(s) | 619 |
| BmgT120I | GGNCC | 2 cut(s) | 619, 630 |
| BmiI | GGNNCC | 4 cut(s) | 170, 267, 305, 654 |
| BmsI | GCATC | 1 cut(s) | 20 |
| BpiI | GAAGAC | 1 cut(s) | 311 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 29, 61, 195, 227 |
| BpuEI | CTTGAG | 1 cut(s) | 281 |
| Bsa29I | ATCGAT | 1 cut(s) | 62 |
| BsaAI | YACGTR | 1 cut(s) | 382 |
| BsaI | GGTCTC | 2 cut(s) | 56, 338 |
| BsaJI | CCNNGG | 1 cut(s) | 575 |
| BsaWI | WCCGGW | 1 cut(s) | 347 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 64, 178, 203, 313, 494, 611, 628 |
| Bse118I | RCCGGY | 1 cut(s) | 347 |
| BseCI | ATCGAT | 1 cut(s) | 62 |
| BseDI | CCNNGG | 1 cut(s) | 575 |
| BseGI | GGATG | 2 cut(s) | 187, 343 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 64, 178, 203, 313, 494, 611, 628 |
| BseMII | CTCAG | 2 cut(s) | 455, 588 |
| BseSI | GKGCMC | 1 cut(s) | 389 |
| BseYI | CCCAGC | 1 cut(s) | 665 |
| BsgI | GTGCAG | 1 cut(s) | 549 |
| Bsh1285I | CGRYCG | 1 cut(s) | 62 |
| BshFI | GGCC | 3 cut(s) | 101, 196, 632 |
| BshTI | ACCGGT | 1 cut(s) | 347 |
| BshVI | ATCGAT | 1 cut(s) | 62 |
| BsiEI | CGRYCG | 1 cut(s) | 62 |
| BsiHKAI | GWGCWC | 1 cut(s) | 389 |
| BsiSI | CCGG | 2 cut(s) | 348, 488 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 64, 178, 203, 313, 494, 611, 628 |
| BsmAI | GTCTC | 2 cut(s) | 56, 338 |
| BsnI | GGCC | 3 cut(s) | 101, 196, 632 |
| Bso31I | GGTCTC | 2 cut(s) | 56, 338 |
| Bsp1286I | GDGCHC | 1 cut(s) | 389 |
| Bsp143I | GATC | 8 cut(s) | 42, 59, 109, 265, 303, 397, 432, 673 |
| BspACI | CCGC | 4 cut(s) | 307, 540, 547, 671 |
| BspANI | GGCC | 3 cut(s) | 101, 196, 632 |
| BspCNI | CTCAG | 2 cut(s) | 456, 589 |
| BspDI | ATCGAT | 1 cut(s) | 62 |
| BspLI | GGNNCC | 4 cut(s) | 170, 267, 305, 654 |
| BspPI | GGATC | 8 cut(s) | 50, 104, 260, 273, 298, 311, 405, 681 |
| BspTI | CTTAAG | 1 cut(s) | 428 |
| BspTNI | GGTCTC | 2 cut(s) | 56, 338 |
| BsrFI | RCCGGY | 1 cut(s) | 347 |
| BssAI | RCCGGY | 1 cut(s) | 347 |
| BssECI | CCNNGG | 1 cut(s) | 575 |
| BssMI | GATC | 8 cut(s) | 42, 59, 109, 265, 303, 397, 432, 673 |
| BssSI | CACGAG | 1 cut(s) | 88 |
| BssT1I | CCWWGG | 1 cut(s) | 575 |
| Bst2BI | CACGAG | 1 cut(s) | 88 |
| Bst6I | CTCTTC | 1 cut(s) | 336 |
| BstAFI | CTTAAG | 1 cut(s) | 428 |
| BstBAI | YACGTR | 1 cut(s) | 382 |
| BstDEI | CTNAG | 2 cut(s) | 464, 597 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 201 |
| BstF5I | GGATG | 2 cut(s) | 187, 343 |
| BstHHI | GCGC | 1 cut(s) | 595 |
| BstKTI | GATC | 8 cut(s) | 45, 62, 112, 268, 306, 400, 435, 676 |
| BstMAI | GTCTC | 2 cut(s) | 56, 338 |
| BstMBI | GATC | 8 cut(s) | 42, 59, 109, 265, 303, 397, 432, 673 |
| BstMCI | CGRYCG | 1 cut(s) | 62 |
| BstSLI | GKGCMC | 1 cut(s) | 389 |
| BstV2I | GAAGAC | 1 cut(s) | 311 |
| BstX2I | RGATCY | 3 cut(s) | 42, 265, 303 |
| BstYI | RGATCY | 3 cut(s) | 42, 265, 303 |
| Bsu15I | ATCGAT | 1 cut(s) | 62 |
| BsuRI | GGCC | 3 cut(s) | 101, 196, 632 |
| BsuTUI | ATCGAT | 1 cut(s) | 62 |
| BtsCI | GGATG | 2 cut(s) | 187, 343 |
| BtsIMutI | CAGTG | 1 cut(s) | 249 |
| CaiI | CAGNNNCTG | 1 cut(s) | 251 |
| CfoI | GCGC | 1 cut(s) | 595 |
| Cfr10I | RCCGGY | 1 cut(s) | 347 |
| Cfr13I | GGNCC | 2 cut(s) | 619, 630 |
| ClaI | ATCGAT | 1 cut(s) | 62 |
| CspAI | ACCGGT | 1 cut(s) | 347 |
| CviAII | CATG | 2 cut(s) | 334, 658 |
| CviJI | RGCY | 6 cut(s) | 101, 196, 210, 487, 632, 665 |
| CviKI_1 | RGCY | 6 cut(s) | 101, 196, 210, 487, 632, 665 |
| DdeI | CTNAG | 2 cut(s) | 464, 597 |
| DpnI | GATC | 8 cut(s) | 44, 61, 111, 267, 305, 399, 434, 675 |
| DpnII | GATC | 8 cut(s) | 42, 59, 109, 265, 303, 397, 432, 673 |
| Eam1104I | CTCTTC | 1 cut(s) | 336 |
| EarI | CTCTTC | 1 cut(s) | 336 |
| EciI | GGCGGA | 1 cut(s) | 686 |
| Eco130I | CCWWGG | 1 cut(s) | 575 |
| Eco31I | GGTCTC | 2 cut(s) | 56, 338 |
| Eco47I | GGWCC | 1 cut(s) | 619 |
| Eco57I | CTGAAG | 1 cut(s) | 99 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 201 |
| EcoT14I | CCWWGG | 1 cut(s) | 575 |
| ErhI | CCWWGG | 1 cut(s) | 575 |
| FaeI | CATG | 2 cut(s) | 337, 661 |
| FaiI | YATR | 8 cut(s) | 20, 220, 222, 331, 335, 587, 659, 689 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 386, 418 |
| FatI | CATG | 2 cut(s) | 333, 657 |
| FauNDI | CATATG | 1 cut(s) | 220 |
| FokI | GGATG | 2 cut(s) | 194, 350 |
| FspBI | CTAG | 3 cut(s) | 525, 576, 627 |
| GlaI | GCGC | 1 cut(s) | 594 |
| GsaI | CCCAGC | 1 cut(s) | 669 |
| HaeIII | GGCC | 3 cut(s) | 101, 196, 632 |
| HapII | CCGG | 2 cut(s) | 348, 488 |
| HhaI | GCGC | 1 cut(s) | 595 |
| Hin1II | CATG | 2 cut(s) | 337, 661 |
| Hin6I | GCGC | 1 cut(s) | 593 |
| HinP1I | GCGC | 1 cut(s) | 593 |
| HincII | GTYRAC | 1 cut(s) | 288 |
| HindII | GTYRAC | 1 cut(s) | 288 |
| HpaII | CCGG | 2 cut(s) | 348, 488 |
| HphI | GGTGA | 2 cut(s) | 362, 509 |
| Hpy166II | GTNNAC | 3 cut(s) | 288, 387, 561 |
| Hpy188I | TCNGA | 7 cut(s) | 59, 109, 203, 437, 465, 510, 623 |
| Hpy188III | TCNNGA | 5 cut(s) | 88, 148, 172, 260, 301 |
| Hpy8I | GTNNAC | 3 cut(s) | 288, 387, 561 |
| HpyAV | CCTTC | 5 cut(s) | 74, 268, 485, 527, 641 |
| HpyCH4IV | ACGT | 2 cut(s) | 366, 381 |
| HpyCH4V | TGCA | 4 cut(s) | 11, 245, 387, 530 |
| HpyF3I | CTNAG | 2 cut(s) | 464, 597 |
| HpySE526I | ACGT | 2 cut(s) | 366, 381 |
| Hsp92II | CATG | 2 cut(s) | 337, 661 |
| HspAI | GCGC | 1 cut(s) | 593 |
| Kzo9I | GATC | 8 cut(s) | 42, 59, 109, 265, 303, 397, 432, 673 |
| LweI | GCATC | 1 cut(s) | 20 |
| MaeI | CTAG | 3 cut(s) | 525, 576, 627 |
| MaeII | ACGT | 2 cut(s) | 366, 381 |
| MaeIII | GTNAC | 4 cut(s) | 73, 247, 362, 422 |
| MalI | GATC | 8 cut(s) | 44, 61, 111, 267, 305, 399, 434, 675 |
| MboI | GATC | 8 cut(s) | 42, 59, 109, 265, 303, 397, 432, 673 |
| MboII | GAAGA | 5 cut(s) | 80, 163, 311, 353, 656 |
| MfeI | CAATTG | 1 cut(s) | 409 |
| MflI | RGATCY | 3 cut(s) | 42, 265, 303 |
| MhlI | GDGCHC | 1 cut(s) | 389 |
| MluCI | AATT | 1 cut(s) | 409 |
| MnlI | CCTC | 6 cut(s) | 197, 221, 256, 459, 471, 676 |
| MroXI | GAANNNNTTC | 1 cut(s) | 651 |
| MseI | TTAA | 1 cut(s) | 429 |
| MslI | CAYNNNNRTG | 1 cut(s) | 455 |
| MspA1I | CMGCKG | 1 cut(s) | 547 |
| MspCI | CTTAAG | 1 cut(s) | 428 |
| MspI | CCGG | 2 cut(s) | 348, 488 |
| MunI | CAATTG | 1 cut(s) | 409 |
| NdeI | CATATG | 1 cut(s) | 220 |
| NdeII | GATC | 8 cut(s) | 42, 59, 109, 265, 303, 397, 432, 673 |
| NlaIII | CATG | 2 cut(s) | 337, 661 |
| NlaIV | GGNNCC | 4 cut(s) | 170, 267, 305, 654 |
| NmeAIII | GCCGAG | 1 cut(s) | 658 |
| NmuCI | GTSAC | 1 cut(s) | 247 |
| PdmI | GAANNNNTTC | 1 cut(s) | 651 |
| PinAI | ACCGGT | 1 cut(s) | 347 |
| Ple19I | CGATCG | 1 cut(s) | 62 |
| Ppu21I | YACGTR | 1 cut(s) | 382 |
| PspFI | CCCAGC | 1 cut(s) | 665 |
| PspN4I | GGNNCC | 4 cut(s) | 170, 267, 305, 654 |
| PspPI | GGNCC | 2 cut(s) | 619, 630 |
| PstNI | CAGNNNCTG | 1 cut(s) | 251 |
| PsuI | RGATCY | 3 cut(s) | 42, 265, 303 |
| PvuI | CGATCG | 1 cut(s) | 62 |
| RseI | CAYNNNNRTG | 1 cut(s) | 455 |
| SaqAI | TTAA | 1 cut(s) | 429 |
| Sau3AI | GATC | 8 cut(s) | 42, 59, 109, 265, 303, 397, 432, 673 |
| Sau96I | GGNCC | 2 cut(s) | 619, 630 |
| SduI | GDGCHC | 1 cut(s) | 389 |
| SfaNI | GCATC | 1 cut(s) | 20 |
| SinI | GGWCC | 1 cut(s) | 619 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 455 |
| SmlI | CTYRAG | 2 cut(s) | 260, 428 |
| SmoI | CTYRAG | 2 cut(s) | 260, 428 |
| Sse9I | AATT | 1 cut(s) | 409 |
| SsiI | CCGC | 4 cut(s) | 307, 540, 547, 671 |
| SspI | AATATT | 1 cut(s) | 296 |
| SspMI | CTAG | 3 cut(s) | 525, 576, 627 |
| StyI | CCWWGG | 1 cut(s) | 575 |
| TaiI | ACGT | 2 cut(s) | 369, 384 |
| TaqI | TCGA | 2 cut(s) | 62, 483 |
| TasI | AATT | 1 cut(s) | 409 |
| Tru1I | TTAA | 1 cut(s) | 429 |
| Tru9I | TTAA | 1 cut(s) | 429 |
| TscAI | CASTG | 1 cut(s) | 256 |
| TseFI | GTSAC | 1 cut(s) | 247 |
| Tsp45I | GTSAC | 1 cut(s) | 247 |
| TspDTI | ATGAA | 1 cut(s) | 354 |
| TspGWI | ACGGA | 1 cut(s) | 258 |
| TspRI | CASTG | 1 cut(s) | 256 |
| Vha464I | CTTAAG | 1 cut(s) | 428 |
| VneI | GTGCAC | 1 cut(s) | 385 |
| VpaK11BI | GGWCC | 1 cut(s) | 619 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 201 |
| XmaJI | CCTAGG | 1 cut(s) | 575 |
| XmnI | GAANNNNTTC | 1 cut(s) | 651 |
| XspI | CTAG | 3 cut(s) | 525, 576, 627 |