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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 466 |
| AciI | CCGC | 1 cut(s) | 58 |
| AclWI | GGATC | 2 cut(s) | 272, 285 |
| AcsI | RAATTY | 3 cut(s) | 104, 373, 379 |
| AcuI | CTGAAG | 1 cut(s) | 351 |
| AcyI | GRCGYC | 3 cut(s) | 153, 185, 461 |
| AfaI | GTAC | 1 cut(s) | 445 |
| AgsI | TTSAA | 3 cut(s) | 118, 379, 384 |
| AhlI | ACTAGT | 1 cut(s) | 446 |
| AjnI | CCWGG | 2 cut(s) | 463, 483 |
| AluBI | AGCT | 1 cut(s) | 434 |
| AluI | AGCT | 1 cut(s) | 434 |
| Alw26I | GTCTC | 2 cut(s) | 348, 386 |
| AlwI | GGATC | 2 cut(s) | 272, 285 |
| AoxI | GGCC | 3 cut(s) | 174, 324, 481 |
| ApaI | GGGCCC | 1 cut(s) | 328 |
| ApoI | RAATTY | 3 cut(s) | 104, 373, 379 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 66 |
| AspA2I | CCTAGG | 1 cut(s) | 212 |
| AspLEI | GCGC | 1 cut(s) | 232 |
| AspS9I | GGNCC | 3 cut(s) | 175, 324, 325 |
| AvrII | CCTAGG | 1 cut(s) | 212 |
| BaeGI | GKGCMC | 1 cut(s) | 328 |
| BamHI | GGATCC | 1 cut(s) | 277 |
| BanII | GRGCYC | 1 cut(s) | 328 |
| BbsI | GAAGAC | 1 cut(s) | 354 |
| BccI | CCATC | 3 cut(s) | 230, 268, 482 |
| BciT130I | CCWGG | 2 cut(s) | 465, 485 |
| BcoDI | GTCTC | 2 cut(s) | 348, 386 |
| BcuI | ACTAGT | 1 cut(s) | 446 |
| BfaI | CTAG | 4 cut(s) | 213, 282, 312, 447 |
| BfoI | RGCGCY | 1 cut(s) | 233 |
| BlnI | CCTAGG | 1 cut(s) | 212 |
| Bme1390I | CCNGG | 2 cut(s) | 465, 485 |
| BmgT120I | GGNCC | 3 cut(s) | 175, 324, 325 |
| BmiI | GGNNCC | 5 cut(s) | 166, 279, 326, 327, 534 |
| BmrFI | CCNGG | 2 cut(s) | 465, 485 |
| BmsI | GCATC | 2 cut(s) | 198, 339 |
| BoxI | GACNNNNGTC | 1 cut(s) | 253 |
| BpiI | GAAGAC | 1 cut(s) | 354 |
| BpmI | CTGGAG | 1 cut(s) | 456 |
| BsaHI | GRCGYC | 3 cut(s) | 153, 185, 461 |
| BsaJI | CCNNGG | 2 cut(s) | 212, 464 |
| BseBI | CCWGG | 2 cut(s) | 465, 485 |
| BseDI | CCNNGG | 2 cut(s) | 212, 464 |
| BseGI | GGATG | 3 cut(s) | 279, 493, 511 |
| BseMII | CTCAG | 1 cut(s) | 28 |
| BseRI | GAGGAG | 3 cut(s) | 62, 65, 545 |
| BseSI | GKGCMC | 1 cut(s) | 328 |
| BshFI | GGCC | 3 cut(s) | 176, 326, 483 |
| BslFI | GGGAC | 1 cut(s) | 442 |
| BsmAI | GTCTC | 2 cut(s) | 348, 386 |
| BsmBI | CGTCTC | 1 cut(s) | 348 |
| BsmFI | GGGAC | 1 cut(s) | 442 |
| BsnI | GGCC | 3 cut(s) | 176, 326, 483 |
| Bsp120I | GGGCCC | 1 cut(s) | 324 |
| Bsp1286I | GDGCHC | 1 cut(s) | 328 |
| Bsp143I | GATC | 3 cut(s) | 95, 197, 277 |
| BspACI | CCGC | 1 cut(s) | 58 |
| BspANI | GGCC | 3 cut(s) | 176, 326, 483 |
| BspCNI | CTCAG | 1 cut(s) | 27 |
| BspLI | GGNNCC | 5 cut(s) | 166, 279, 326, 327, 534 |
| BspPI | GGATC | 2 cut(s) | 272, 285 |
| BssECI | CCNNGG | 2 cut(s) | 212, 464 |
| BssMI | GATC | 3 cut(s) | 95, 197, 277 |
| BssNI | GRCGYC | 3 cut(s) | 153, 185, 461 |
| BssT1I | CCWWGG | 1 cut(s) | 212 |
| Bst2UI | CCWGG | 2 cut(s) | 465, 485 |
| Bst4CI | ACNGT | 2 cut(s) | 223, 255 |
| BstACI | GRCGYC | 3 cut(s) | 153, 185, 461 |
| BstDEI | CTNAG | 1 cut(s) | 14 |
| BstF5I | GGATG | 3 cut(s) | 279, 493, 511 |
| BstH2I | RGCGCY | 1 cut(s) | 233 |
| BstHHI | GCGC | 1 cut(s) | 232 |
| BstKTI | GATC | 3 cut(s) | 98, 200, 280 |
| BstMAI | GTCTC | 2 cut(s) | 348, 386 |
| BstMBI | GATC | 3 cut(s) | 95, 197, 277 |
| BstNI | CCWGG | 2 cut(s) | 465, 485 |
| BstNSI | RCATGY | 1 cut(s) | 444 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 253 |
| BstSCI | CCNGG | 2 cut(s) | 463, 483 |
| BstSLI | GKGCMC | 1 cut(s) | 328 |
| BstV2I | GAAGAC | 1 cut(s) | 354 |
| BstX2I | RGATCY | 1 cut(s) | 277 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 90 |
| BstYI | RGATCY | 1 cut(s) | 277 |
| BsuRI | GGCC | 3 cut(s) | 176, 326, 483 |
| BtsCI | GGATG | 3 cut(s) | 279, 493, 511 |
| CfoI | GCGC | 1 cut(s) | 232 |
| Cfr13I | GGNCC | 3 cut(s) | 175, 324, 325 |
| CseI | GACGC | 3 cut(s) | 161, 193, 469 |
| Csp6I | GTAC | 1 cut(s) | 444 |
| CviAII | CATG | 2 cut(s) | 266, 441 |
| CviJI | RGCY | 6 cut(s) | 176, 326, 434, 483, 514, 535 |
| CviKI_1 | RGCY | 6 cut(s) | 176, 326, 434, 483, 514, 535 |
| CviQI | GTAC | 1 cut(s) | 444 |
| DdeI | CTNAG | 1 cut(s) | 14 |
| DpnI | GATC | 3 cut(s) | 97, 199, 279 |
| DpnII | GATC | 3 cut(s) | 95, 197, 277 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 466 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 466 |
| Eco130I | CCWWGG | 1 cut(s) | 212 |
| Eco24I | GRGCYC | 1 cut(s) | 328 |
| Eco57I | CTGAAG | 1 cut(s) | 351 |
| EcoO109I | RGGNCCY | 3 cut(s) | 175, 324, 325 |
| EcoRI | GAATTC | 1 cut(s) | 379 |
| EcoRII | CCWGG | 2 cut(s) | 463, 483 |
| EcoT14I | CCWWGG | 1 cut(s) | 212 |
| EcoT38I | GRGCYC | 1 cut(s) | 328 |
| ErhI | CCWWGG | 1 cut(s) | 212 |
| Esp3I | CGTCTC | 1 cut(s) | 348 |
| FaeI | CATG | 2 cut(s) | 269, 444 |
| FaiI | YATR | 5 cut(s) | 161, 170, 267, 442, 458 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 140, 172 |
| FaqI | GGGAC | 1 cut(s) | 442 |
| FatI | CATG | 2 cut(s) | 265, 440 |
| FauI | CCCGC | 1 cut(s) | 51 |
| FokI | GGATG | 3 cut(s) | 286, 500, 518 |
| FriOI | GRGCYC | 1 cut(s) | 328 |
| FspBI | CTAG | 4 cut(s) | 213, 282, 312, 447 |
| GlaI | GCGC | 1 cut(s) | 231 |
| GsuI | CTGGAG | 1 cut(s) | 456 |
| HaeII | RGCGCY | 1 cut(s) | 233 |
| HaeIII | GGCC | 3 cut(s) | 176, 326, 483 |
| HgaI | GACGC | 3 cut(s) | 161, 193, 469 |
| HhaI | GCGC | 1 cut(s) | 232 |
| Hin1I | GRCGYC | 3 cut(s) | 153, 185, 461 |
| Hin1II | CATG | 2 cut(s) | 269, 444 |
| Hin6I | GCGC | 1 cut(s) | 230 |
| HinP1I | GCGC | 1 cut(s) | 230 |
| HincII | GTYRAC | 1 cut(s) | 129 |
| HindII | GTYRAC | 1 cut(s) | 129 |
| HinfI | GANTC | 2 cut(s) | 118, 359 |
| Hpy166II | GTNNAC | 1 cut(s) | 129 |
| Hpy188I | TCNGA | 2 cut(s) | 17, 46 |
| Hpy188III | TCNNGA | 1 cut(s) | 74 |
| Hpy8I | GTNNAC | 1 cut(s) | 129 |
| Hpy99I | CGWCG | 1 cut(s) | 252 |
| HpyAV | CCTTC | 1 cut(s) | 518 |
| HpyCH4III | ACNGT | 2 cut(s) | 223, 255 |
| HpyCH4IV | ACGT | 2 cut(s) | 398, 543 |
| HpyCH4V | TGCA | 1 cut(s) | 265 |
| HpyF3I | CTNAG | 1 cut(s) | 14 |
| HpySE526I | ACGT | 2 cut(s) | 398, 543 |
| Hsp92I | GRCGYC | 3 cut(s) | 153, 185, 461 |
| Hsp92II | CATG | 2 cut(s) | 269, 444 |
| HspAI | GCGC | 1 cut(s) | 230 |
| Kzo9I | GATC | 3 cut(s) | 95, 197, 277 |
| LmnI | GCTCC | 2 cut(s) | 437, 532 |
| LweI | GCATC | 2 cut(s) | 198, 339 |
| MaeI | CTAG | 4 cut(s) | 213, 282, 312, 447 |
| MaeII | ACGT | 2 cut(s) | 398, 543 |
| MaeIII | GTNAC | 1 cut(s) | 449 |
| MalI | GATC | 3 cut(s) | 97, 199, 279 |
| MboI | GATC | 3 cut(s) | 95, 197, 277 |
| MboII | GAAGA | 4 cut(s) | 62, 112, 354, 357 |
| MfeI | CAATTG | 1 cut(s) | 122 |
| MflI | RGATCY | 1 cut(s) | 277 |
| MhlI | GDGCHC | 1 cut(s) | 328 |
| MluCI | AATT | 6 cut(s) | 66, 104, 122, 344, 373, 379 |
| MlyI | GAGTC | 1 cut(s) | 368 |
| MroXI | GAANNNNTTC | 1 cut(s) | 66 |
| MseI | TTAA | 3 cut(s) | 335, 401, 416 |
| MspA1I | CMGCKG | 1 cut(s) | 434 |
| MspR9I | CCNGG | 2 cut(s) | 465, 485 |
| MunI | CAATTG | 1 cut(s) | 122 |
| MvaI | CCWGG | 2 cut(s) | 465, 485 |
| NdeII | GATC | 3 cut(s) | 95, 197, 277 |
| NlaIII | CATG | 2 cut(s) | 269, 444 |
| NlaIV | GGNNCC | 5 cut(s) | 166, 279, 326, 327, 534 |
| NmuCI | GTSAC | 1 cut(s) | 449 |
| NspI | RCATGY | 1 cut(s) | 444 |
| PdmI | GAANNNNTTC | 1 cut(s) | 66 |
| PfeI | GAWTC | 1 cut(s) | 118 |
| PleI | GAGTC | 1 cut(s) | 367 |
| PpsI | GAGTC | 1 cut(s) | 367 |
| PshAI | GACNNNNGTC | 1 cut(s) | 253 |
| Psp6I | CCWGG | 2 cut(s) | 463, 483 |
| PspGI | CCWGG | 2 cut(s) | 463, 483 |
| PspN4I | GGNNCC | 5 cut(s) | 166, 279, 326, 327, 534 |
| PspOMI | GGGCCC | 1 cut(s) | 324 |
| PspPI | GGNCC | 3 cut(s) | 175, 324, 325 |
| PsuI | RGATCY | 1 cut(s) | 277 |
| PvuII | CAGCTG | 1 cut(s) | 434 |
| RsaI | GTAC | 1 cut(s) | 445 |
| RsaNI | GTAC | 1 cut(s) | 444 |
| SaqAI | TTAA | 3 cut(s) | 335, 401, 416 |
| Sau3AI | GATC | 3 cut(s) | 95, 197, 277 |
| Sau96I | GGNCC | 3 cut(s) | 175, 324, 325 |
| SchI | GAGTC | 1 cut(s) | 368 |
| ScrFI | CCNGG | 2 cut(s) | 465, 485 |
| SduI | GDGCHC | 1 cut(s) | 328 |
| SetI | ASST | 9 cut(s) | 22, 35, 57, 295, 390, 401, 436, 546, 557 |
| SfaNI | GCATC | 2 cut(s) | 198, 339 |
| SpeI | ACTAGT | 1 cut(s) | 446 |
| Sse9I | AATT | 6 cut(s) | 66, 104, 122, 344, 373, 379 |
| SsiI | CCGC | 1 cut(s) | 58 |
| SspMI | CTAG | 4 cut(s) | 213, 282, 312, 447 |
| StyD4I | CCNGG | 2 cut(s) | 463, 483 |
| StyI | CCWWGG | 1 cut(s) | 212 |
| TaaI | ACNGT | 2 cut(s) | 223, 255 |
| TaiI | ACGT | 2 cut(s) | 401, 546 |
| TaqI | TCGA | 3 cut(s) | 98, 257, 305 |
| TasI | AATT | 6 cut(s) | 66, 104, 122, 344, 373, 379 |
| TatI | WGTACW | 1 cut(s) | 443 |
| TfiI | GAWTC | 1 cut(s) | 118 |
| Tru1I | TTAA | 3 cut(s) | 335, 401, 416 |
| Tru9I | TTAA | 3 cut(s) | 335, 401, 416 |
| TseFI | GTSAC | 1 cut(s) | 449 |
| Tsp45I | GTSAC | 1 cut(s) | 449 |
| XapI | RAATTY | 3 cut(s) | 104, 373, 379 |
| XceI | RCATGY | 1 cut(s) | 444 |
| XmaJI | CCTAGG | 1 cut(s) | 212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 66 |
| XspI | CTAG | 4 cut(s) | 213, 282, 312, 447 |