Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 585 |
| AatII | GACGTC | 1 cut(s) | 879 |
| Acc36I | ACCTGC | 1 cut(s) | 585 |
| AccII | CGCG | 3 cut(s) | 81, 192, 268 |
| AciI | CCGC | 6 cut(s) | 79, 161, 186, 190, 219, 829 |
| AclI | AACGTT | 1 cut(s) | 586 |
| AclWI | GGATC | 2 cut(s) | 389, 515 |
| AcoI | YGGCCR | 1 cut(s) | 187 |
| AcuI | CTGAAG | 1 cut(s) | 141 |
| AcyI | GRCGYC | 1 cut(s) | 876 |
| AfaI | GTAC | 1 cut(s) | 369 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 383, 384, 784 |
| AgsI | TTSAA | 2 cut(s) | 314, 891 |
| AhlI | ACTAGT | 1 cut(s) | 370 |
| AleI | CACNNNNGTG | 1 cut(s) | 829 |
| AluBI | AGCT | 2 cut(s) | 427, 667 |
| AluI | AGCT | 2 cut(s) | 427, 667 |
| Alw21I | GWGCWC | 1 cut(s) | 100 |
| Alw26I | GTCTC | 3 cut(s) | 205, 221, 779 |
| AlwI | GGATC | 2 cut(s) | 389, 515 |
| AoxI | GGCC | 3 cut(s) | 133, 187, 216 |
| ApeKI | GCWGC | 1 cut(s) | 75 |
| AspLEI | GCGC | 3 cut(s) | 194, 270, 812 |
| AspS9I | GGNCC | 1 cut(s) | 133 |
| AsuHPI | GGTGA | 1 cut(s) | 853 |
| AsuII | TTCGAA | 1 cut(s) | 611 |
| BanII | GRGCYC | 1 cut(s) | 341 |
| BbsI | GAAGAC | 2 cut(s) | 608, 887 |
| Bbv12I | GWGCWC | 1 cut(s) | 100 |
| BbvI | GCAGC | 1 cut(s) | 87 |
| BccI | CCATC | 5 cut(s) | 377, 469, 533, 752, 789 |
| BceAI | ACGGC | 1 cut(s) | 842 |
| BcoDI | GTCTC | 3 cut(s) | 205, 221, 779 |
| BcuI | ACTAGT | 1 cut(s) | 370 |
| BfaI | CTAG | 7 cut(s) | 137, 195, 222, 231, 371, 704, 807 |
| BfoI | RGCGCY | 1 cut(s) | 813 |
| BfuAI | ACCTGC | 1 cut(s) | 585 |
| BisI | GCNGC | 6 cut(s) | 76, 79, 161, 187, 190, 219 |
| BlsI | GCNGC | 6 cut(s) | 77, 80, 162, 188, 191, 220 |
| BmgT120I | GGNCC | 1 cut(s) | 133 |
| BmiI | GGNNCC | 2 cut(s) | 159, 338 |
| BmsI | GCATC | 1 cut(s) | 179 |
| BpiI | GAAGAC | 2 cut(s) | 608, 887 |
| BpmI | CTGGAG | 2 cut(s) | 176, 438 |
| Bpu14I | TTCGAA | 1 cut(s) | 611 |
| BsaBI | GATNNNNATC | 1 cut(s) | 69 |
| BsaHI | GRCGYC | 1 cut(s) | 876 |
| BsaJI | CCNNGG | 2 cut(s) | 341, 824 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 149, 179 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 383, 384, 784 |
| Bse8I | GATNNNNATC | 1 cut(s) | 69 |
| BseDI | CCNNGG | 2 cut(s) | 341, 824 |
| BseGI | GGATG | 3 cut(s) | 393, 622, 763 |
| BseJI | GATNNNNATC | 1 cut(s) | 69 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 383, 384, 784 |
| BseRI | GAGGAG | 3 cut(s) | 223, 767, 810 |
| BseX3I | CGGCCG | 1 cut(s) | 187 |
| BseXI | GCAGC | 1 cut(s) | 87 |
| BsgI | GTGCAG | 2 cut(s) | 783, 853 |
| Bsh1236I | CGCG | 3 cut(s) | 81, 192, 268 |
| Bsh1285I | CGRYCG | 2 cut(s) | 190, 858 |
| BshFI | GGCC | 3 cut(s) | 135, 189, 218 |
| BsiEI | CGRYCG | 2 cut(s) | 190, 858 |
| BsiHKAI | GWGCWC | 1 cut(s) | 100 |
| BslFI | GGGAC | 1 cut(s) | 776 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 383, 384, 784 |
| BsmAI | GTCTC | 3 cut(s) | 205, 221, 779 |
| BsmBI | CGTCTC | 1 cut(s) | 779 |
| BsmFI | GGGAC | 1 cut(s) | 776 |
| BsmI | GAATGC | 1 cut(s) | 703 |
| BsnI | GGCC | 3 cut(s) | 135, 189, 218 |
| Bsp119I | TTCGAA | 1 cut(s) | 611 |
| Bsp1286I | GDGCHC | 2 cut(s) | 100, 341 |
| Bsp143I | GATC | 4 cut(s) | 394, 520, 631, 769 |
| BspACI | CCGC | 6 cut(s) | 79, 161, 186, 190, 219, 829 |
| BspANI | GGCC | 3 cut(s) | 135, 189, 218 |
| BspFNI | CGCG | 3 cut(s) | 81, 192, 268 |
| BspLI | GGNNCC | 2 cut(s) | 159, 338 |
| BspMI | ACCTGC | 1 cut(s) | 585 |
| BspPI | GGATC | 2 cut(s) | 389, 515 |
| BspT104I | TTCGAA | 1 cut(s) | 611 |
| BssECI | CCNNGG | 2 cut(s) | 341, 824 |
| BssMI | GATC | 4 cut(s) | 394, 520, 631, 769 |
| BssNI | GRCGYC | 1 cut(s) | 876 |
| BssT1I | CCWWGG | 1 cut(s) | 341 |
| Bst6I | CTCTTC | 2 cut(s) | 561, 735 |
| BstACI | GRCGYC | 1 cut(s) | 876 |
| BstBI | TTCGAA | 1 cut(s) | 611 |
| BstDSI | CCRYGG | 1 cut(s) | 824 |
| BstF5I | GGATG | 3 cut(s) | 393, 622, 763 |
| BstFNI | CGCG | 3 cut(s) | 81, 192, 268 |
| BstH2I | RGCGCY | 1 cut(s) | 813 |
| BstHHI | GCGC | 3 cut(s) | 194, 270, 812 |
| BstKTI | GATC | 4 cut(s) | 397, 523, 634, 772 |
| BstMAI | GTCTC | 3 cut(s) | 205, 221, 779 |
| BstMBI | GATC | 4 cut(s) | 394, 520, 631, 769 |
| BstMCI | CGRYCG | 2 cut(s) | 190, 858 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 160, 176 |
| BstUI | CGCG | 3 cut(s) | 81, 192, 268 |
| BstV1I | GCAGC | 1 cut(s) | 87 |
| BstV2I | GAAGAC | 2 cut(s) | 608, 887 |
| BstX2I | RGATCY | 1 cut(s) | 520 |
| BstYI | RGATCY | 1 cut(s) | 520 |
| BstZI | CGGCCG | 1 cut(s) | 187 |
| BsuRI | GGCC | 3 cut(s) | 135, 189, 218 |
| BtgI | CCRYGG | 1 cut(s) | 824 |
| BtsCI | GGATG | 3 cut(s) | 393, 622, 763 |
| BtsIMutI | CAGTG | 1 cut(s) | 378 |
| BveI | ACCTGC | 1 cut(s) | 585 |
| CciNI | GCGGCCGC | 1 cut(s) | 187 |
| CfoI | GCGC | 3 cut(s) | 194, 270, 812 |
| Cfr13I | GGNCC | 1 cut(s) | 133 |
| Csp6I | GTAC | 1 cut(s) | 368 |
| CviAII | CATG | 2 cut(s) | 271, 650 |
| CviQI | GTAC | 1 cut(s) | 368 |
| DpnI | GATC | 4 cut(s) | 396, 522, 633, 771 |
| DpnII | GATC | 4 cut(s) | 394, 520, 631, 769 |
| EaeI | YGGCCR | 1 cut(s) | 187 |
| EagI | CGGCCG | 1 cut(s) | 187 |
| Eam1104I | CTCTTC | 2 cut(s) | 561, 735 |
| EarI | CTCTTC | 2 cut(s) | 561, 735 |
| EclXI | CGGCCG | 1 cut(s) | 187 |
| Eco130I | CCWWGG | 1 cut(s) | 341 |
| Eco24I | GRGCYC | 1 cut(s) | 341 |
| Eco52I | CGGCCG | 1 cut(s) | 187 |
| Eco57I | CTGAAG | 1 cut(s) | 141 |
| EcoO109I | RGGNCCY | 1 cut(s) | 133 |
| EcoT14I | CCWWGG | 1 cut(s) | 341 |
| EcoT38I | GRGCYC | 1 cut(s) | 341 |
| ErhI | CCWWGG | 1 cut(s) | 341 |
| Esp3I | CGTCTC | 1 cut(s) | 779 |
| FaeI | CATG | 2 cut(s) | 274, 653 |
| FaiI | YATR | 7 cut(s) | 38, 272, 500, 515, 651, 688, 695 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 605, 637 |
| FaqI | GGGAC | 1 cut(s) | 776 |
| FatI | CATG | 2 cut(s) | 270, 649 |
| Fnu4HI | GCNGC | 6 cut(s) | 76, 79, 161, 187, 190, 219 |
| FokI | GGATG | 3 cut(s) | 400, 629, 770 |
| FriOI | GRGCYC | 1 cut(s) | 341 |
| Fsp4HI | GCNGC | 6 cut(s) | 76, 79, 161, 187, 190, 219 |
| FspBI | CTAG | 7 cut(s) | 137, 195, 222, 231, 371, 704, 807 |
| GlaI | GCGC | 3 cut(s) | 193, 269, 811 |
| GluI | GCNGC | 6 cut(s) | 76, 79, 161, 187, 190, 219 |
| GsuI | CTGGAG | 2 cut(s) | 176, 438 |
| HaeII | RGCGCY | 1 cut(s) | 813 |
| HaeIII | GGCC | 3 cut(s) | 135, 189, 218 |
| HhaI | GCGC | 3 cut(s) | 194, 270, 812 |
| Hin1I | GRCGYC | 1 cut(s) | 876 |
| Hin1II | CATG | 2 cut(s) | 274, 653 |
| Hin6I | GCGC | 3 cut(s) | 192, 268, 810 |
| HinP1I | GCGC | 3 cut(s) | 192, 268, 810 |
| HinfI | GANTC | 2 cut(s) | 815, 851 |
| HphI | GGTGA | 1 cut(s) | 853 |
| Hpy188I | TCNGA | 7 cut(s) | 121, 414, 465, 525, 675, 850, 874 |
| Hpy188III | TCNNGA | 4 cut(s) | 314, 398, 422, 704 |
| Hpy99I | CGWCG | 3 cut(s) | 96, 878, 881 |
| HpyAV | CCTTC | 6 cut(s) | 116, 124, 229, 436, 607, 648 |
| HpyCH4IV | ACGT | 2 cut(s) | 586, 876 |
| HpyCH4V | TGCA | 4 cut(s) | 552, 649, 764, 834 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 160, 176 |
| HpySE526I | ACGT | 2 cut(s) | 586, 876 |
| Hsp92I | GRCGYC | 1 cut(s) | 876 |
| Hsp92II | CATG | 2 cut(s) | 274, 653 |
| HspAI | GCGC | 3 cut(s) | 192, 268, 810 |
| Kzo9I | GATC | 4 cut(s) | 394, 520, 631, 769 |
| LmnI | GCTCC | 3 cut(s) | 157, 336, 424 |
| Lsp1109I | GCAGC | 1 cut(s) | 87 |
| LweI | GCATC | 1 cut(s) | 179 |
| MaeI | CTAG | 7 cut(s) | 137, 195, 222, 231, 371, 704, 807 |
| MaeII | ACGT | 2 cut(s) | 586, 876 |
| MalI | GATC | 4 cut(s) | 396, 522, 633, 771 |
| MboI | GATC | 4 cut(s) | 394, 520, 631, 769 |
| MboII | GAAGA | 7 cut(s) | 80, 578, 583, 613, 694, 752, 887 |
| MflI | RGATCY | 1 cut(s) | 520 |
| MhlI | GDGCHC | 2 cut(s) | 100, 341 |
| MluCI | AATT | 4 cut(s) | 148, 355, 486, 547 |
| MlyI | GAGTC | 1 cut(s) | 845 |
| MmeI | TCCRAC | 1 cut(s) | 897 |
| MslI | CAYNNNNRTG | 1 cut(s) | 829 |
| MspA1I | CMGCKG | 1 cut(s) | 163 |
| Mva1269I | GAATGC | 1 cut(s) | 703 |
| MvnI | CGCG | 3 cut(s) | 81, 192, 268 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 160, 176 |
| NdeII | GATC | 4 cut(s) | 394, 520, 631, 769 |
| NlaIII | CATG | 2 cut(s) | 274, 653 |
| NlaIV | GGNNCC | 2 cut(s) | 159, 338 |
| NotI | GCGGCCGC | 1 cut(s) | 187 |
| NspV | TTCGAA | 1 cut(s) | 611 |
| OliI | CACNNNNGTG | 1 cut(s) | 829 |
| PaqCI | CACCTGC | 1 cut(s) | 585 |
| PctI | GAATGC | 1 cut(s) | 703 |
| PfeI | GAWTC | 1 cut(s) | 815 |
| PflFI | GACNNNGTC | 1 cut(s) | 854 |
| PkrI | GCNGC | 6 cut(s) | 77, 80, 162, 188, 191, 220 |
| PleI | GAGTC | 1 cut(s) | 845 |
| PpsI | GAGTC | 1 cut(s) | 845 |
| Psp1406I | AACGTT | 1 cut(s) | 586 |
| PspN4I | GGNNCC | 2 cut(s) | 159, 338 |
| PspPI | GGNCC | 1 cut(s) | 133 |
| PsuI | RGATCY | 1 cut(s) | 520 |
| PsyI | GACNNNGTC | 1 cut(s) | 854 |
| RsaI | GTAC | 1 cut(s) | 369 |
| RsaNI | GTAC | 1 cut(s) | 368 |
| RseI | CAYNNNNRTG | 1 cut(s) | 829 |
| SatI | GCNGC | 6 cut(s) | 76, 79, 161, 187, 190, 219 |
| Sau3AI | GATC | 4 cut(s) | 394, 520, 631, 769 |
| Sau96I | GGNCC | 1 cut(s) | 133 |
| SchI | GAGTC | 1 cut(s) | 845 |
| SduI | GDGCHC | 2 cut(s) | 100, 341 |
| SfaNI | GCATC | 1 cut(s) | 179 |
| SfuI | TTCGAA | 1 cut(s) | 611 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 829 |
| SpeI | ACTAGT | 1 cut(s) | 370 |
| Sse9I | AATT | 4 cut(s) | 148, 355, 486, 547 |
| SsiI | CCGC | 6 cut(s) | 79, 161, 186, 190, 219, 829 |
| SspMI | CTAG | 7 cut(s) | 137, 195, 222, 231, 371, 704, 807 |
| StyI | CCWWGG | 1 cut(s) | 341 |
| TaiI | ACGT | 2 cut(s) | 589, 879 |
| TaqI | TCGA | 4 cut(s) | 351, 611, 663, 858 |
| TaqII | GACCGA | 1 cut(s) | 844 |
| TasI | AATT | 4 cut(s) | 148, 355, 486, 547 |
| TauI | GCSGC | 5 cut(s) | 81, 163, 189, 192, 221 |
| TfiI | GAWTC | 1 cut(s) | 815 |
| TscAI | CASTG | 1 cut(s) | 385 |
| TseI | GCWGC | 1 cut(s) | 75 |
| TspDTI | ATGAA | 1 cut(s) | 710 |
| TspRI | CASTG | 1 cut(s) | 385 |
| Tth111I | GACNNNGTC | 1 cut(s) | 854 |
| XbaI | TCTAGA | 1 cut(s) | 703 |
| XspI | CTAG | 7 cut(s) | 137, 195, 222, 231, 371, 704, 807 |
| ZraI | GACGTC | 1 cut(s) | 877 |