Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 9 - 33 | 4.9e-06 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 129 |
| Acc16I | TGCGCA | 1 cut(s) | 600 |
| Acc36I | ACCTGC | 2 cut(s) | 129, 644 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 231 |
| AciI | CCGC | 3 cut(s) | 263, 297, 540 |
| AclWI | GGATC | 3 cut(s) | 261, 274, 395 |
| AcoI | YGGCCR | 1 cut(s) | 67 |
| AcsI | RAATTY | 1 cut(s) | 287 |
| AcvI | CACGTG | 1 cut(s) | 569 |
| AfaI | GTAC | 1 cut(s) | 448 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 231, 653 |
| AgsI | TTSAA | 6 cut(s) | 76, 194, 293, 472, 521, 553 |
| AjnI | CCWGG | 1 cut(s) | 627 |
| AluBI | AGCT | 2 cut(s) | 527, 637 |
| AluI | AGCT | 2 cut(s) | 527, 637 |
| Alw21I | GWGCWC | 1 cut(s) | 585 |
| Alw26I | GTCTC | 2 cut(s) | 376, 512 |
| AlwI | GGATC | 3 cut(s) | 261, 274, 395 |
| AoxI | GGCC | 3 cut(s) | 67, 222, 630 |
| ApeKI | GCWGC | 1 cut(s) | 389 |
| ApoI | RAATTY | 1 cut(s) | 287 |
| AseI | ATTAAT | 1 cut(s) | 410 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 42 |
| AspLEI | GCGC | 1 cut(s) | 601 |
| AspS9I | GGNCC | 5 cut(s) | 234, 614, 625, 631, 656 |
| AsuHPI | GGTGA | 1 cut(s) | 347 |
| AvaII | GGWCC | 4 cut(s) | 234, 614, 625, 656 |
| AxyI | CCTNAGG | 1 cut(s) | 219 |
| BalI | TGGCCA | 1 cut(s) | 69 |
| BamHI | GGATCC | 1 cut(s) | 266 |
| BbrPI | CACGTG | 1 cut(s) | 569 |
| Bbv12I | GWGCWC | 1 cut(s) | 585 |
| BbvI | GCAGC | 1 cut(s) | 401 |
| BccI | CCATC | 3 cut(s) | 104, 316, 326 |
| BceAI | ACGGC | 1 cut(s) | 392 |
| BciT130I | CCWGG | 1 cut(s) | 629 |
| BcoDI | GTCTC | 2 cut(s) | 376, 512 |
| BfaI | CTAG | 1 cut(s) | 300 |
| BfmI | CTRYAG | 1 cut(s) | 651 |
| BfuAI | ACCTGC | 2 cut(s) | 129, 644 |
| BisI | GCNGC | 2 cut(s) | 297, 390 |
| BlsI | GCNGC | 2 cut(s) | 298, 391 |
| Bme1390I | CCNGG | 1 cut(s) | 629 |
| Bme18I | GGWCC | 4 cut(s) | 234, 614, 625, 656 |
| BmgT120I | GGNCC | 5 cut(s) | 234, 614, 625, 631, 656 |
| BmiI | GGNNCC | 1 cut(s) | 268 |
| BmrFI | CCNGG | 1 cut(s) | 629 |
| BmsI | GCATC | 1 cut(s) | 610 |
| BsaAI | YACGTR | 1 cut(s) | 569 |
| BsaWI | WCCGGW | 1 cut(s) | 364 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 231, 653 |
| Bse1I | ACTGG | 1 cut(s) | 25 |
| Bse21I | CCTNAGG | 1 cut(s) | 219 |
| BseBI | CCWGG | 1 cut(s) | 629 |
| BseGI | GGATG | 1 cut(s) | 337 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 231, 653 |
| BseMII | CTCAG | 1 cut(s) | 356 |
| BseNI | ACTGG | 1 cut(s) | 25 |
| BseRI | GAGGAG | 2 cut(s) | 140, 332 |
| BseXI | GCAGC | 1 cut(s) | 401 |
| BseYI | CCCAGC | 1 cut(s) | 633 |
| Bsh1285I | CGRYCG | 1 cut(s) | 174 |
| BshFI | GGCC | 3 cut(s) | 69, 224, 632 |
| BsiEI | CGRYCG | 1 cut(s) | 174 |
| BsiHKAI | GWGCWC | 1 cut(s) | 585 |
| BsiSI | CCGG | 2 cut(s) | 14, 365 |
| BslFI | GGGAC | 1 cut(s) | 198 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 231, 653 |
| BsmAI | GTCTC | 2 cut(s) | 376, 512 |
| BsmFI | GGGAC | 1 cut(s) | 198 |
| BsmI | GAATGC | 1 cut(s) | 418 |
| BsnI | GGCC | 3 cut(s) | 69, 224, 632 |
| Bsp1286I | GDGCHC | 1 cut(s) | 585 |
| Bsp143I | GATC | 3 cut(s) | 171, 266, 400 |
| BspACI | CCGC | 3 cut(s) | 263, 297, 540 |
| BspANI | GGCC | 3 cut(s) | 69, 224, 632 |
| BspCNI | CTCAG | 1 cut(s) | 355 |
| BspLI | GGNNCC | 1 cut(s) | 268 |
| BspMAI | CTGCAG | 1 cut(s) | 655 |
| BspMI | ACCTGC | 2 cut(s) | 129, 644 |
| BspPI | GGATC | 3 cut(s) | 261, 274, 395 |
| BsrI | ACTGG | 1 cut(s) | 25 |
| BssMI | GATC | 3 cut(s) | 171, 266, 400 |
| Bst2UI | CCWGG | 1 cut(s) | 629 |
| BstBAI | YACGTR | 1 cut(s) | 569 |
| BstDEI | CTNAG | 2 cut(s) | 219, 342 |
| BstF5I | GGATG | 1 cut(s) | 337 |
| BstHHI | GCGC | 1 cut(s) | 601 |
| BstKTI | GATC | 3 cut(s) | 174, 269, 403 |
| BstMAI | GTCTC | 2 cut(s) | 376, 512 |
| BstMBI | GATC | 3 cut(s) | 171, 266, 400 |
| BstMCI | CGRYCG | 1 cut(s) | 174 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 395 |
| BstNI | CCWGG | 1 cut(s) | 629 |
| BstSCI | CCNGG | 1 cut(s) | 627 |
| BstSFI | CTRYAG | 1 cut(s) | 651 |
| BstV1I | GCAGC | 1 cut(s) | 401 |
| BstX2I | RGATCY | 2 cut(s) | 266, 400 |
| BstYI | RGATCY | 2 cut(s) | 266, 400 |
| Bsu36I | CCTNAGG | 1 cut(s) | 219 |
| BsuRI | GGCC | 3 cut(s) | 69, 224, 632 |
| BtsCI | GGATG | 1 cut(s) | 337 |
| BtsIMutI | CAGTG | 1 cut(s) | 659 |
| BveI | ACCTGC | 2 cut(s) | 129, 644 |
| CfoI | GCGC | 1 cut(s) | 601 |
| Cfr13I | GGNCC | 5 cut(s) | 234, 614, 625, 631, 656 |
| Csp6I | GTAC | 1 cut(s) | 447 |
| CviAII | CATG | 4 cut(s) | 80, 238, 423, 611 |
| CviQI | GTAC | 1 cut(s) | 447 |
| DdeI | CTNAG | 2 cut(s) | 219, 342 |
| DpnI | GATC | 3 cut(s) | 173, 268, 402 |
| DpnII | GATC | 3 cut(s) | 171, 266, 400 |
| EaeI | YGGCCR | 1 cut(s) | 67 |
| Eco47I | GGWCC | 4 cut(s) | 234, 614, 625, 656 |
| Eco72I | CACGTG | 1 cut(s) | 569 |
| Eco81I | CCTNAGG | 1 cut(s) | 219 |
| EcoRII | CCWGG | 1 cut(s) | 627 |
| FaeI | CATG | 4 cut(s) | 83, 241, 426, 614 |
| FaiI | YATR | 7 cut(s) | 36, 81, 105, 122, 239, 424, 612 |
| FaqI | GGGAC | 1 cut(s) | 198 |
| FatI | CATG | 4 cut(s) | 79, 237, 422, 610 |
| FauI | CCCGC | 2 cut(s) | 256, 533 |
| Fnu4HI | GCNGC | 2 cut(s) | 297, 390 |
| FokI | GGATG | 1 cut(s) | 344 |
| Fsp4HI | GCNGC | 2 cut(s) | 297, 390 |
| FspAI | RTGCGCAY | 1 cut(s) | 600 |
| FspBI | CTAG | 1 cut(s) | 300 |
| FspI | TGCGCA | 1 cut(s) | 600 |
| GlaI | GCGC | 1 cut(s) | 600 |
| GluI | GCNGC | 2 cut(s) | 297, 390 |
| GsaI | CCCAGC | 1 cut(s) | 637 |
| HaeIII | GGCC | 3 cut(s) | 69, 224, 632 |
| HapII | CCGG | 2 cut(s) | 14, 365 |
| HhaI | GCGC | 1 cut(s) | 601 |
| Hin1II | CATG | 4 cut(s) | 83, 241, 426, 614 |
| Hin6I | GCGC | 1 cut(s) | 599 |
| HinP1I | GCGC | 1 cut(s) | 599 |
| HinfI | GANTC | 5 cut(s) | 76, 434, 517, 691, 698 |
| HpaII | CCGG | 2 cut(s) | 14, 365 |
| HphI | GGTGA | 1 cut(s) | 347 |
| Hpy166II | GTNNAC | 2 cut(s) | 200, 659 |
| Hpy188I | TCNGA | 2 cut(s) | 355, 715 |
| Hpy188III | TCNNGA | 2 cut(s) | 279, 695 |
| Hpy8I | GTNNAC | 2 cut(s) | 200, 659 |
| Hpy99I | CGWCG | 1 cut(s) | 378 |
| HpyAV | CCTTC | 1 cut(s) | 538 |
| HpyCH4IV | ACGT | 1 cut(s) | 568 |
| HpyCH4V | TGCA | 6 cut(s) | 103, 389, 418, 466, 577, 653 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 395 |
| HpyF3I | CTNAG | 2 cut(s) | 219, 342 |
| HpySE526I | ACGT | 1 cut(s) | 568 |
| Hsp92II | CATG | 4 cut(s) | 83, 241, 426, 614 |
| HspAI | GCGC | 1 cut(s) | 599 |
| Kzo9I | GATC | 3 cut(s) | 171, 266, 400 |
| LmnI | GCTCC | 1 cut(s) | 524 |
| Lsp1109I | GCAGC | 1 cut(s) | 401 |
| LweI | GCATC | 1 cut(s) | 610 |
| MaeI | CTAG | 1 cut(s) | 300 |
| MaeII | ACGT | 1 cut(s) | 568 |
| MaeIII | GTNAC | 2 cut(s) | 276, 692 |
| MalI | GATC | 3 cut(s) | 173, 268, 402 |
| MboI | GATC | 3 cut(s) | 171, 266, 400 |
| MboII | GAAGA | 1 cut(s) | 35 |
| MfeI | CAATTG | 2 cut(s) | 71, 467 |
| MflI | RGATCY | 2 cut(s) | 266, 400 |
| MhlI | GDGCHC | 1 cut(s) | 585 |
| MlsI | TGGCCA | 1 cut(s) | 69 |
| MluCI | AATT | 7 cut(s) | 71, 287, 407, 411, 467, 548, 677 |
| MluNI | TGGCCA | 1 cut(s) | 69 |
| MlyI | GAGTC | 2 cut(s) | 692, 700 |
| MmeI | TCCRAC | 1 cut(s) | 571 |
| Mox20I | TGGCCA | 1 cut(s) | 69 |
| MroXI | GAANNNNTTC | 1 cut(s) | 42 |
| MscI | TGGCCA | 1 cut(s) | 69 |
| MseI | TTAA | 3 cut(s) | 410, 666, 680 |
| MslI | CAYNNNNRTG | 2 cut(s) | 108, 427 |
| Msp20I | TGGCCA | 1 cut(s) | 69 |
| MspI | CCGG | 2 cut(s) | 14, 365 |
| MspR9I | CCNGG | 1 cut(s) | 629 |
| MunI | CAATTG | 2 cut(s) | 71, 467 |
| Mva1269I | GAATGC | 1 cut(s) | 418 |
| MvaI | CCWGG | 1 cut(s) | 629 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 395 |
| NdeII | GATC | 3 cut(s) | 171, 266, 400 |
| NlaIII | CATG | 4 cut(s) | 83, 241, 426, 614 |
| NlaIV | GGNNCC | 1 cut(s) | 268 |
| NmuCI | GTSAC | 2 cut(s) | 276, 692 |
| NsbI | TGCGCA | 1 cut(s) | 600 |
| PaqCI | CACCTGC | 1 cut(s) | 129 |
| PctI | GAATGC | 1 cut(s) | 418 |
| PdmI | GAANNNNTTC | 1 cut(s) | 42 |
| PfeI | GAWTC | 3 cut(s) | 76, 434, 517 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 231 |
| PkrI | GCNGC | 2 cut(s) | 298, 391 |
| Ple19I | CGATCG | 1 cut(s) | 174 |
| PleI | GAGTC | 2 cut(s) | 692, 699 |
| PmaCI | CACGTG | 1 cut(s) | 569 |
| PmlI | CACGTG | 1 cut(s) | 569 |
| PpsI | GAGTC | 2 cut(s) | 692, 699 |
| Ppu21I | YACGTR | 1 cut(s) | 569 |
| PshBI | ATTAAT | 1 cut(s) | 410 |
| Psp6I | CCWGG | 1 cut(s) | 627 |
| PspCI | CACGTG | 1 cut(s) | 569 |
| PspFI | CCCAGC | 1 cut(s) | 633 |
| PspGI | CCWGG | 1 cut(s) | 627 |
| PspN4I | GGNNCC | 1 cut(s) | 268 |
| PspPI | GGNCC | 5 cut(s) | 234, 614, 625, 631, 656 |
| PstI | CTGCAG | 1 cut(s) | 655 |
| PsuI | RGATCY | 2 cut(s) | 266, 400 |
| PvuI | CGATCG | 1 cut(s) | 174 |
| RsaI | GTAC | 1 cut(s) | 448 |
| RsaNI | GTAC | 1 cut(s) | 447 |
| RseI | CAYNNNNRTG | 2 cut(s) | 108, 427 |
| SaqAI | TTAA | 3 cut(s) | 410, 666, 680 |
| SatI | GCNGC | 2 cut(s) | 297, 390 |
| Sau3AI | GATC | 3 cut(s) | 171, 266, 400 |
| Sau96I | GGNCC | 5 cut(s) | 234, 614, 625, 631, 656 |
| SchI | GAGTC | 2 cut(s) | 692, 700 |
| ScrFI | CCNGG | 1 cut(s) | 629 |
| SduI | GDGCHC | 1 cut(s) | 585 |
| SfaNI | GCATC | 1 cut(s) | 610 |
| SfcI | CTRYAG | 1 cut(s) | 651 |
| SinI | GGWCC | 4 cut(s) | 234, 614, 625, 656 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 108, 427 |
| Sse9I | AATT | 7 cut(s) | 71, 287, 407, 411, 467, 548, 677 |
| SsiI | CCGC | 3 cut(s) | 263, 297, 540 |
| SspMI | CTAG | 1 cut(s) | 300 |
| StyD4I | CCNGG | 1 cut(s) | 627 |
| TaiI | ACGT | 1 cut(s) | 571 |
| TaqI | TCGA | 2 cut(s) | 170, 174 |
| TaqII | GACCGA | 2 cut(s) | 264, 613 |
| TasI | AATT | 7 cut(s) | 71, 287, 407, 411, 467, 548, 677 |
| TatI | WGTACW | 1 cut(s) | 446 |
| TauI | GCSGC | 1 cut(s) | 299 |
| TfiI | GAWTC | 3 cut(s) | 76, 434, 517 |
| Tru1I | TTAA | 3 cut(s) | 410, 666, 680 |
| Tru9I | TTAA | 3 cut(s) | 410, 666, 680 |
| TscAI | CASTG | 1 cut(s) | 666 |
| TseFI | GTSAC | 2 cut(s) | 276, 692 |
| TseI | GCWGC | 1 cut(s) | 389 |
| Tsp45I | GTSAC | 2 cut(s) | 276, 692 |
| TspDTI | ATGAA | 4 cut(s) | 51, 270, 411, 709 |
| TspRI | CASTG | 1 cut(s) | 666 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 231 |
| VpaK11BI | GGWCC | 4 cut(s) | 234, 614, 625, 656 |
| VspI | ATTAAT | 1 cut(s) | 410 |
| XapI | RAATTY | 1 cut(s) | 287 |
| XmnI | GAANNNNTTC | 1 cut(s) | 42 |
| XspI | CTAG | 1 cut(s) | 300 |