ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 131 |
| AciI | CCGC | 2 cut(s) | 10, 736 |
| AclWI | GGATC | 2 cut(s) | 390, 590 |
| AcoI | YGGCCR | 1 cut(s) | 396 |
| AcuI | CTGAAG | 2 cut(s) | 791, 837 |
| AfaI | GTAC | 1 cut(s) | 244 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 487, 735, 837 |
| AflIII | ACRYGT | 1 cut(s) | 281 |
| AgsI | TTSAA | 3 cut(s) | 277, 443, 781 |
| AjiI | CACGTC | 1 cut(s) | 282 |
| AjnI | CCWGG | 2 cut(s) | 648, 719 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 748, 780 |
| AluBI | AGCT | 1 cut(s) | 364 |
| AluI | AGCT | 1 cut(s) | 364 |
| Alw26I | GTCTC | 4 cut(s) | 167, 336, 691, 783 |
| AlwI | GGATC | 2 cut(s) | 390, 590 |
| Ama87I | CYCGRG | 1 cut(s) | 830 |
| Aor13HI | TCCGGA | 1 cut(s) | 131 |
| AoxI | GGCC | 3 cut(s) | 396, 645, 840 |
| ApaI | GGGCCC | 2 cut(s) | 649, 844 |
| ApeKI | GCWGC | 1 cut(s) | 739 |
| AspS9I | GGNCC | 6 cut(s) | 31, 645, 646, 827, 840, 841 |
| AsuHPI | GGTGA | 5 cut(s) | 248, 427, 523, 717, 744 |
| AsuII | TTCGAA | 1 cut(s) | 307 |
| AvaI | CYCGRG | 1 cut(s) | 830 |
| AvaII | GGWCC | 2 cut(s) | 31, 827 |
| BaeGI | GKGCMC | 2 cut(s) | 649, 844 |
| BanII | GRGCYC | 2 cut(s) | 649, 844 |
| BbsI | GAAGAC | 1 cut(s) | 284 |
| BbvI | GCAGC | 1 cut(s) | 726 |
| BccI | CCATC | 1 cut(s) | 233 |
| BciT130I | CCWGG | 2 cut(s) | 650, 721 |
| BcoDI | GTCTC | 4 cut(s) | 167, 336, 691, 783 |
| BfaI | CTAG | 4 cut(s) | 390, 459, 558, 795 |
| BisI | GCNGC | 2 cut(s) | 737, 740 |
| BlpI | GCTNAGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 2 cut(s) | 738, 741 |
| Bme1390I | CCNGG | 2 cut(s) | 650, 721 |
| Bme18I | GGWCC | 2 cut(s) | 31, 827 |
| BmeT110I | CYCGRG | 1 cut(s) | 830 |
| BmgBI | CACGTC | 1 cut(s) | 282 |
| BmgT120I | GGNCC | 6 cut(s) | 31, 645, 646, 827, 840, 841 |
| BmiI | GGNNCC | 7 cut(s) | 432, 492, 646, 647, 828, 829, 842 |
| BmrFI | CCNGG | 2 cut(s) | 650, 721 |
| BmrI | ACTGGG | 2 cut(s) | 130, 255 |
| BmuI | ACTGGG | 2 cut(s) | 130, 255 |
| BpiI | GAAGAC | 1 cut(s) | 284 |
| BpmI | CTGGAG | 1 cut(s) | 671 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 6 |
| Bpu14I | TTCGAA | 1 cut(s) | 307 |
| BsaI | GGTCTC | 1 cut(s) | 691 |
| BsaJI | CCNNGG | 5 cut(s) | 399, 450, 648, 755, 831 |
| BsaWI | WCCGGW | 2 cut(s) | 131, 541 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 220, 250, 644, 674 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 487, 735, 837 |
| Bse1I | ACTGG | 4 cut(s) | 125, 181, 250, 494 |
| BseAI | TCCGGA | 1 cut(s) | 131 |
| BseBI | CCWGG | 2 cut(s) | 650, 721 |
| BseDI | CCNNGG | 5 cut(s) | 399, 450, 648, 755, 831 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 487, 735, 837 |
| BseMII | CTCAG | 1 cut(s) | 284 |
| BseNI | ACTGG | 4 cut(s) | 125, 181, 250, 494 |
| BseRI | GAGGAG | 3 cut(s) | 185, 392, 423 |
| BseSI | GKGCMC | 2 cut(s) | 649, 844 |
| BseXI | GCAGC | 1 cut(s) | 726 |
| BseYI | CCCAGC | 1 cut(s) | 728 |
| BshFI | GGCC | 3 cut(s) | 398, 647, 842 |
| BsiHKCI | CYCGRG | 1 cut(s) | 830 |
| BsiSI | CCGG | 2 cut(s) | 132, 542 |
| BslFI | GGGAC | 3 cut(s) | 159, 521, 813 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 487, 735, 837 |
| BsmAI | GTCTC | 4 cut(s) | 167, 336, 691, 783 |
| BsmFI | GGGAC | 3 cut(s) | 159, 521, 813 |
| BsmI | GAATGC | 1 cut(s) | 315 |
| BsnI | GGCC | 3 cut(s) | 398, 647, 842 |
| Bso31I | GGTCTC | 1 cut(s) | 691 |
| BsoBI | CYCGRG | 1 cut(s) | 830 |
| Bsp119I | TTCGAA | 1 cut(s) | 307 |
| Bsp120I | GGGCCC | 2 cut(s) | 645, 840 |
| Bsp1286I | GDGCHC | 2 cut(s) | 649, 844 |
| Bsp13I | TCCGGA | 1 cut(s) | 131 |
| Bsp143I | GATC | 2 cut(s) | 382, 582 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 6 |
| BspACI | CCGC | 2 cut(s) | 10, 736 |
| BspANI | GGCC | 3 cut(s) | 398, 647, 842 |
| BspCNI | CTCAG | 1 cut(s) | 285 |
| BspEI | TCCGGA | 1 cut(s) | 131 |
| BspLI | GGNNCC | 7 cut(s) | 432, 492, 646, 647, 828, 829, 842 |
| BspPI | GGATC | 2 cut(s) | 390, 590 |
| BspT104I | TTCGAA | 1 cut(s) | 307 |
| BspTNI | GGTCTC | 1 cut(s) | 691 |
| BsrI | ACTGG | 4 cut(s) | 125, 181, 250, 494 |
| BssECI | CCNNGG | 5 cut(s) | 399, 450, 648, 755, 831 |
| BssMI | GATC | 2 cut(s) | 382, 582 |
| BssT1I | CCWWGG | 2 cut(s) | 450, 755 |
| Bst2UI | CCWGG | 2 cut(s) | 650, 721 |
| Bst6I | CTCTTC | 1 cut(s) | 488 |
| BstBI | TTCGAA | 1 cut(s) | 307 |
| BstC8I | GCNNGC | 1 cut(s) | 734 |
| BstDEI | CTNAG | 2 cut(s) | 6, 293 |
| BstEII | GGTNACC | 1 cut(s) | 723 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 485 |
| BstKTI | GATC | 2 cut(s) | 385, 585 |
| BstMAI | GTCTC | 4 cut(s) | 167, 336, 691, 783 |
| BstMBI | GATC | 2 cut(s) | 382, 582 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 464 |
| BstNI | CCWGG | 2 cut(s) | 650, 721 |
| BstPI | GGTNACC | 1 cut(s) | 723 |
| BstSCI | CCNGG | 2 cut(s) | 648, 719 |
| BstSLI | GKGCMC | 2 cut(s) | 649, 844 |
| BstV1I | GCAGC | 1 cut(s) | 726 |
| BstV2I | GAAGAC | 1 cut(s) | 284 |
| BstX2I | RGATCY | 2 cut(s) | 382, 582 |
| BstYI | RGATCY | 2 cut(s) | 382, 582 |
| BsuRI | GGCC | 3 cut(s) | 398, 647, 842 |
| BtrI | CACGTC | 1 cut(s) | 282 |
| BtsIMutI | CAGTG | 2 cut(s) | 216, 501 |
| Cac8I | GCNNGC | 1 cut(s) | 734 |
| Cfr13I | GGNCC | 6 cut(s) | 31, 645, 646, 827, 840, 841 |
| CseI | GACGC | 1 cut(s) | 464 |
| Csp6I | GTAC | 1 cut(s) | 243 |
| CviAII | CATG | 2 cut(s) | 715, 809 |
| CviQI | GTAC | 1 cut(s) | 243 |
| DdeI | CTNAG | 2 cut(s) | 6, 293 |
| DpnI | GATC | 2 cut(s) | 384, 584 |
| DpnII | GATC | 2 cut(s) | 382, 582 |
| EaeI | YGGCCR | 1 cut(s) | 396 |
| Eam1104I | CTCTTC | 1 cut(s) | 488 |
| EarI | CTCTTC | 1 cut(s) | 488 |
| Eco130I | CCWWGG | 2 cut(s) | 450, 755 |
| Eco24I | GRGCYC | 2 cut(s) | 649, 844 |
| Eco31I | GGTCTC | 1 cut(s) | 691 |
| Eco47I | GGWCC | 2 cut(s) | 31, 827 |
| Eco57I | CTGAAG | 2 cut(s) | 791, 837 |
| Eco88I | CYCGRG | 1 cut(s) | 830 |
| Eco91I | GGTNACC | 1 cut(s) | 723 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 485 |
| EcoO109I | RGGNCCY | 4 cut(s) | 31, 645, 646, 827 |
| EcoO65I | GGTNACC | 1 cut(s) | 723 |
| EcoRII | CCWGG | 2 cut(s) | 648, 719 |
| EcoT14I | CCWWGG | 2 cut(s) | 450, 755 |
| EcoT22I | ATGCAT | 1 cut(s) | 810 |
| EcoT38I | GRGCYC | 2 cut(s) | 649, 844 |
| ErhI | CCWWGG | 2 cut(s) | 450, 755 |
| FaeI | CATG | 2 cut(s) | 718, 812 |
| FaiI | YATR | 7 cut(s) | 88, 210, 263, 422, 716, 806, 810 |
| FaqI | GGGAC | 3 cut(s) | 159, 521, 813 |
| FatI | CATG | 2 cut(s) | 714, 808 |
| Fnu4HI | GCNGC | 2 cut(s) | 737, 740 |
| FriOI | GRGCYC | 2 cut(s) | 649, 844 |
| Fsp4HI | GCNGC | 2 cut(s) | 737, 740 |
| FspBI | CTAG | 4 cut(s) | 390, 459, 558, 795 |
| GluI | GCNGC | 2 cut(s) | 737, 740 |
| GsaI | CCCAGC | 1 cut(s) | 732 |
| GsuI | CTGGAG | 1 cut(s) | 671 |
| HaeIII | GGCC | 3 cut(s) | 398, 647, 842 |
| HapII | CCGG | 2 cut(s) | 132, 542 |
| HgaI | GACGC | 1 cut(s) | 464 |
| Hin1II | CATG | 2 cut(s) | 718, 812 |
| HinfI | GANTC | 6 cut(s) | 59, 128, 147, 304, 659, 791 |
| HpaII | CCGG | 2 cut(s) | 132, 542 |
| HphI | GGTGA | 5 cut(s) | 248, 427, 523, 717, 744 |
| Hpy166II | GTNNAC | 2 cut(s) | 214, 287 |
| Hpy188I | TCNGA | 6 cut(s) | 183, 294, 387, 438, 684, 771 |
| Hpy188III | TCNNGA | 5 cut(s) | 67, 116, 132, 558, 830 |
| Hpy8I | GTNNAC | 2 cut(s) | 214, 287 |
| Hpy99I | CGWCG | 1 cut(s) | 688 |
| HpyAV | CCTTC | 7 cut(s) | 129, 292, 351, 603, 608, 628, 766 |
| HpyCH4IV | ACGT | 2 cut(s) | 281, 691 |
| HpyCH4V | TGCA | 2 cut(s) | 313, 808 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 464 |
| HpyF3I | CTNAG | 2 cut(s) | 6, 293 |
| HpySE526I | ACGT | 2 cut(s) | 281, 691 |
| Hsp92II | CATG | 2 cut(s) | 718, 812 |
| KflI | GGGWCCC | 1 cut(s) | 827 |
| Kpn2I | TCCGGA | 1 cut(s) | 131 |
| Kzo9I | GATC | 2 cut(s) | 382, 582 |
| LmnI | GCTCC | 1 cut(s) | 436 |
| Lsp1109I | GCAGC | 1 cut(s) | 726 |
| MaeI | CTAG | 4 cut(s) | 390, 459, 558, 795 |
| MaeII | ACGT | 2 cut(s) | 281, 691 |
| MaeIII | GTNAC | 3 cut(s) | 415, 511, 723 |
| MalI | GATC | 2 cut(s) | 384, 584 |
| MboI | GATC | 2 cut(s) | 382, 582 |
| MboII | GAAGA | 6 cut(s) | 137, 248, 289, 475, 578, 793 |
| MflI | RGATCY | 2 cut(s) | 382, 582 |
| MhlI | GDGCHC | 2 cut(s) | 649, 844 |
| MluCI | AATT | 3 cut(s) | 186, 443, 763 |
| MlyI | GAGTC | 4 cut(s) | 68, 141, 668, 785 |
| MmeI | TCCRAC | 1 cut(s) | 707 |
| Mph1103I | ATGCAT | 1 cut(s) | 810 |
| MroI | TCCGGA | 1 cut(s) | 131 |
| MseI | TTAA | 2 cut(s) | 446, 594 |
| MslI | CAYNNNNRTG | 1 cut(s) | 266 |
| MspI | CCGG | 2 cut(s) | 132, 542 |
| MspR9I | CCNGG | 2 cut(s) | 650, 721 |
| Mva1269I | GAATGC | 1 cut(s) | 315 |
| MvaI | CCWGG | 2 cut(s) | 650, 721 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 464 |
| NdeII | GATC | 2 cut(s) | 382, 582 |
| NlaIII | CATG | 2 cut(s) | 718, 812 |
| NlaIV | GGNNCC | 7 cut(s) | 432, 492, 646, 647, 828, 829, 842 |
| NmeAIII | GCCGAG | 2 cut(s) | 424, 566 |
| NmuCI | GTSAC | 3 cut(s) | 415, 511, 723 |
| NsiI | ATGCAT | 1 cut(s) | 810 |
| NspV | TTCGAA | 1 cut(s) | 307 |
| PctI | GAATGC | 1 cut(s) | 315 |
| PfeI | GAWTC | 2 cut(s) | 128, 304 |
| PkrI | GCNGC | 2 cut(s) | 738, 741 |
| PleI | GAGTC | 4 cut(s) | 67, 141, 667, 785 |
| PpsI | GAGTC | 4 cut(s) | 67, 141, 667, 785 |
| PpuMI | RGGWCCY | 2 cut(s) | 31, 827 |
| Psp5II | RGGWCCY | 2 cut(s) | 31, 827 |
| Psp6I | CCWGG | 2 cut(s) | 648, 719 |
| PspEI | GGTNACC | 1 cut(s) | 723 |
| PspFI | CCCAGC | 1 cut(s) | 728 |
| PspGI | CCWGG | 2 cut(s) | 648, 719 |
| PspN4I | GGNNCC | 7 cut(s) | 432, 492, 646, 647, 828, 829, 842 |
| PspOMI | GGGCCC | 2 cut(s) | 645, 840 |
| PspPI | GGNCC | 6 cut(s) | 31, 645, 646, 827, 840, 841 |
| PspPPI | RGGWCCY | 2 cut(s) | 31, 827 |
| PsuI | RGATCY | 2 cut(s) | 382, 582 |
| RsaI | GTAC | 1 cut(s) | 244 |
| RsaNI | GTAC | 1 cut(s) | 243 |
| RseI | CAYNNNNRTG | 1 cut(s) | 266 |
| SaqAI | TTAA | 2 cut(s) | 446, 594 |
| SatI | GCNGC | 2 cut(s) | 737, 740 |
| Sau3AI | GATC | 2 cut(s) | 382, 582 |
| Sau96I | GGNCC | 6 cut(s) | 31, 645, 646, 827, 840, 841 |
| SchI | GAGTC | 4 cut(s) | 68, 141, 668, 785 |
| ScrFI | CCNGG | 2 cut(s) | 650, 721 |
| SduI | GDGCHC | 2 cut(s) | 649, 844 |
| SfuI | TTCGAA | 1 cut(s) | 307 |
| SinI | GGWCC | 2 cut(s) | 31, 827 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 266 |
| Sse9I | AATT | 3 cut(s) | 186, 443, 763 |
| SsiI | CCGC | 2 cut(s) | 10, 736 |
| SspMI | CTAG | 4 cut(s) | 390, 459, 558, 795 |
| StyD4I | CCNGG | 2 cut(s) | 648, 719 |
| StyI | CCWWGG | 2 cut(s) | 450, 755 |
| TaiI | ACGT | 2 cut(s) | 284, 694 |
| TaqI | TCGA | 3 cut(s) | 193, 307, 486 |
| TasI | AATT | 3 cut(s) | 186, 443, 763 |
| TauI | GCSGC | 1 cut(s) | 739 |
| TfiI | GAWTC | 2 cut(s) | 128, 304 |
| Tru1I | TTAA | 2 cut(s) | 446, 594 |
| Tru9I | TTAA | 2 cut(s) | 446, 594 |
| TscAI | CASTG | 2 cut(s) | 223, 501 |
| TseFI | GTSAC | 3 cut(s) | 415, 511, 723 |
| TseI | GCWGC | 1 cut(s) | 739 |
| Tsp45I | GTSAC | 3 cut(s) | 415, 511, 723 |
| TspGWI | ACGGA | 1 cut(s) | 182 |
| TspRI | CASTG | 2 cut(s) | 223, 501 |
| VpaK11BI | GGWCC | 2 cut(s) | 31, 827 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 485 |
| XbaI | TCTAGA | 1 cut(s) | 557 |
| XspI | CTAG | 4 cut(s) | 390, 459, 558, 795 |
| Zsp2I | ATGCAT | 1 cut(s) | 810 |