ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 138 - 161 | 2.6e-08 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 276, 616 |
| Acc36I | ACCTGC | 1 cut(s) | 330 |
| AccBSI | CCGCTC | 1 cut(s) | 539 |
| AccII | CGCG | 1 cut(s) | 26 |
| AciI | CCGC | 1 cut(s) | 539 |
| AcsI | RAATTY | 2 cut(s) | 62, 190 |
| AcuI | CTGAAG | 1 cut(s) | 371 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 114, 502 |
| AgsI | TTSAA | 3 cut(s) | 62, 188, 590 |
| AjnI | CCWGG | 1 cut(s) | 219 |
| AluBI | AGCT | 4 cut(s) | 14, 250, 318, 368 |
| AluI | AGCT | 4 cut(s) | 14, 250, 318, 368 |
| Alw21I | GWGCWC | 1 cut(s) | 252 |
| Alw26I | GTCTC | 3 cut(s) | 218, 344, 519 |
| AoxI | GGCC | 2 cut(s) | 16, 105 |
| ApoI | RAATTY | 2 cut(s) | 62, 190 |
| AspS9I | GGNCC | 1 cut(s) | 199 |
| AsuHPI | GGTGA | 4 cut(s) | 257, 305, 398, 443 |
| AvaII | GGWCC | 1 cut(s) | 199 |
| BanII | GRGCYC | 2 cut(s) | 161, 252 |
| Bbv12I | GWGCWC | 1 cut(s) | 252 |
| BccI | CCATC | 1 cut(s) | 461 |
| BciT130I | CCWGG | 1 cut(s) | 221 |
| BclI | TGATCA | 2 cut(s) | 295, 457 |
| BcoDI | GTCTC | 3 cut(s) | 218, 344, 519 |
| BfaI | CTAG | 2 cut(s) | 11, 266 |
| BfuAI | ACCTGC | 1 cut(s) | 330 |
| BglII | AGATCT | 1 cut(s) | 7 |
| Bme1390I | CCNGG | 1 cut(s) | 221 |
| Bme18I | GGWCC | 1 cut(s) | 199 |
| BmgT120I | GGNCC | 1 cut(s) | 199 |
| BmiI | GGNNCC | 4 cut(s) | 75, 160, 200, 553 |
| BmrFI | CCNGG | 1 cut(s) | 221 |
| BmrI | ACTGGG | 1 cut(s) | 133 |
| BmuI | ACTGGG | 1 cut(s) | 133 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 324, 356, 516, 548 |
| BsaI | GGTCTC | 2 cut(s) | 218, 344 |
| BsaJI | CCNNGG | 1 cut(s) | 289 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 114, 502 |
| Bse1I | ACTGG | 1 cut(s) | 128 |
| Bse3DI | GCAATG | 1 cut(s) | 135 |
| BseBI | CCWGG | 1 cut(s) | 221 |
| BseDI | CCNNGG | 1 cut(s) | 289 |
| BseGI | GGATG | 2 cut(s) | 244, 472 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 114, 502 |
| BseMI | GCAATG | 1 cut(s) | 135 |
| BseMII | CTCAG | 3 cut(s) | 102, 355, 547 |
| BseNI | ACTGG | 1 cut(s) | 128 |
| BseRI | GAGGAG | 1 cut(s) | 65 |
| Bsh1236I | CGCG | 1 cut(s) | 26 |
| BshFI | GGCC | 2 cut(s) | 18, 107 |
| BsiHKAI | GWGCWC | 1 cut(s) | 252 |
| BsiSI | CCGG | 1 cut(s) | 255 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 114, 502 |
| BsmAI | GTCTC | 3 cut(s) | 218, 344, 519 |
| BsmI | GAATGC | 1 cut(s) | 564 |
| BsnI | GGCC | 2 cut(s) | 18, 107 |
| Bso31I | GGTCTC | 2 cut(s) | 218, 344 |
| Bsp1286I | GDGCHC | 2 cut(s) | 161, 252 |
| Bsp143I | GATC | 3 cut(s) | 7, 295, 457 |
| Bsp68I | TCGCGA | 1 cut(s) | 26 |
| BspACI | CCGC | 1 cut(s) | 539 |
| BspANI | GGCC | 2 cut(s) | 18, 107 |
| BspCNI | CTCAG | 3 cut(s) | 103, 354, 546 |
| BspFNI | CGCG | 1 cut(s) | 26 |
| BspLI | GGNNCC | 4 cut(s) | 75, 160, 200, 553 |
| BspMI | ACCTGC | 1 cut(s) | 330 |
| BspTNI | GGTCTC | 2 cut(s) | 218, 344 |
| BsrBI | CCGCTC | 1 cut(s) | 539 |
| BsrDI | GCAATG | 1 cut(s) | 135 |
| BsrI | ACTGG | 1 cut(s) | 128 |
| BssECI | CCNNGG | 1 cut(s) | 289 |
| BssMI | GATC | 3 cut(s) | 7, 295, 457 |
| BssT1I | CCWWGG | 1 cut(s) | 289 |
| Bst2UI | CCWGG | 1 cut(s) | 221 |
| BstC8I | GCNNGC | 2 cut(s) | 16, 252 |
| BstDEI | CTNAG | 5 cut(s) | 111, 178, 341, 497, 533 |
| BstEII | GGTNACC | 1 cut(s) | 449 |
| BstF5I | GGATG | 2 cut(s) | 244, 472 |
| BstFNI | CGCG | 1 cut(s) | 26 |
| BstKTI | GATC | 3 cut(s) | 10, 298, 460 |
| BstMAI | GTCTC | 3 cut(s) | 218, 344, 519 |
| BstMBI | GATC | 3 cut(s) | 7, 295, 457 |
| BstNI | CCWGG | 1 cut(s) | 221 |
| BstPI | GGTNACC | 1 cut(s) | 449 |
| BstSCI | CCNGG | 1 cut(s) | 219 |
| BstUI | CGCG | 1 cut(s) | 26 |
| BstX2I | RGATCY | 1 cut(s) | 7 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 209 |
| BstYI | RGATCY | 1 cut(s) | 7 |
| BsuRI | GGCC | 2 cut(s) | 18, 107 |
| BtgZI | GCGATG | 1 cut(s) | 563 |
| BtsCI | GGATG | 2 cut(s) | 244, 472 |
| BtsIMutI | CAGTG | 2 cut(s) | 42, 349 |
| BtuMI | TCGCGA | 1 cut(s) | 26 |
| BveI | ACCTGC | 1 cut(s) | 330 |
| Cac8I | GCNNGC | 2 cut(s) | 16, 252 |
| Cfr13I | GGNCC | 1 cut(s) | 199 |
| CviAII | CATG | 3 cut(s) | 209, 299, 461 |
| DdeI | CTNAG | 5 cut(s) | 111, 178, 341, 497, 533 |
| DpnI | GATC | 3 cut(s) | 9, 297, 459 |
| DpnII | GATC | 3 cut(s) | 7, 295, 457 |
| Ecl136II | GAGCTC | 1 cut(s) | 250 |
| Eco130I | CCWWGG | 1 cut(s) | 289 |
| Eco24I | GRGCYC | 2 cut(s) | 161, 252 |
| Eco31I | GGTCTC | 2 cut(s) | 218, 344 |
| Eco47I | GGWCC | 1 cut(s) | 199 |
| Eco53kI | GAGCTC | 1 cut(s) | 250 |
| Eco57I | CTGAAG | 1 cut(s) | 371 |
| Eco91I | GGTNACC | 1 cut(s) | 449 |
| EcoICRI | GAGCTC | 1 cut(s) | 250 |
| EcoO65I | GGTNACC | 1 cut(s) | 449 |
| EcoRI | GAATTC | 1 cut(s) | 62 |
| EcoRII | CCWGG | 1 cut(s) | 219 |
| EcoT14I | CCWWGG | 1 cut(s) | 289 |
| EcoT38I | GRGCYC | 2 cut(s) | 161, 252 |
| ErhI | CCWWGG | 1 cut(s) | 289 |
| FaeI | CATG | 3 cut(s) | 212, 302, 464 |
| FaiI | YATR | 7 cut(s) | 173, 210, 276, 300, 417, 462, 616 |
| FatI | CATG | 3 cut(s) | 208, 298, 460 |
| FbaI | TGATCA | 2 cut(s) | 295, 457 |
| FokI | GGATG | 2 cut(s) | 251, 479 |
| FriOI | GRGCYC | 2 cut(s) | 161, 252 |
| FspBI | CTAG | 2 cut(s) | 11, 266 |
| HaeIII | GGCC | 2 cut(s) | 18, 107 |
| HapII | CCGG | 1 cut(s) | 255 |
| Hin1II | CATG | 3 cut(s) | 212, 302, 464 |
| HinfI | GANTC | 2 cut(s) | 205, 303 |
| HpaII | CCGG | 1 cut(s) | 255 |
| HphI | GGTGA | 4 cut(s) | 257, 305, 398, 443 |
| Hpy188I | TCNGA | 3 cut(s) | 112, 351, 536 |
| Hpy188III | TCNNGA | 3 cut(s) | 25, 202, 215 |
| HpyCH4V | TGCA | 1 cut(s) | 477 |
| HpyF3I | CTNAG | 5 cut(s) | 111, 178, 341, 497, 533 |
| Hsp92II | CATG | 3 cut(s) | 212, 302, 464 |
| Ksp22I | TGATCA | 2 cut(s) | 295, 457 |
| Kzo9I | GATC | 3 cut(s) | 7, 295, 457 |
| LmnI | GCTCC | 4 cut(s) | 73, 164, 541, 551 |
| MaeI | CTAG | 2 cut(s) | 11, 266 |
| MaeIII | GTNAC | 2 cut(s) | 386, 449 |
| MalI | GATC | 3 cut(s) | 9, 297, 459 |
| MbiI | CCGCTC | 1 cut(s) | 539 |
| MboI | GATC | 3 cut(s) | 7, 295, 457 |
| MboII | GAAGA | 3 cut(s) | 17, 236, 270 |
| MflI | RGATCY | 1 cut(s) | 7 |
| MhlI | GDGCHC | 2 cut(s) | 161, 252 |
| MluCI | AATT | 7 cut(s) | 57, 62, 81, 190, 271, 490, 518 |
| MlyI | GAGTC | 1 cut(s) | 312 |
| MmeI | TCCRAC | 1 cut(s) | 51 |
| MnlI | CCTC | 8 cut(s) | 43, 50, 79, 112, 118, 128, 477, 541 |
| MseI | TTAA | 3 cut(s) | 230, 311, 395 |
| MslI | CAYNNNNRTG | 1 cut(s) | 465 |
| MspI | CCGG | 1 cut(s) | 255 |
| MspR9I | CCNGG | 1 cut(s) | 221 |
| Mva1269I | GAATGC | 1 cut(s) | 564 |
| MvaI | CCWGG | 1 cut(s) | 221 |
| MvnI | CGCG | 1 cut(s) | 26 |
| NdeII | GATC | 3 cut(s) | 7, 295, 457 |
| NlaIII | CATG | 3 cut(s) | 212, 302, 464 |
| NlaIV | GGNNCC | 4 cut(s) | 75, 160, 200, 553 |
| NmuCI | GTSAC | 2 cut(s) | 386, 449 |
| NruI | TCGCGA | 1 cut(s) | 26 |
| PctI | GAATGC | 1 cut(s) | 564 |
| PfeI | GAWTC | 1 cut(s) | 205 |
| PleI | GAGTC | 1 cut(s) | 311 |
| PpsI | GAGTC | 1 cut(s) | 311 |
| PsiI | TTATAA | 2 cut(s) | 276, 616 |
| Psp124BI | GAGCTC | 1 cut(s) | 252 |
| Psp6I | CCWGG | 1 cut(s) | 219 |
| PspEI | GGTNACC | 1 cut(s) | 449 |
| PspGI | CCWGG | 1 cut(s) | 219 |
| PspN4I | GGNNCC | 4 cut(s) | 75, 160, 200, 553 |
| PspPI | GGNCC | 1 cut(s) | 199 |
| PsuI | RGATCY | 1 cut(s) | 7 |
| RruI | TCGCGA | 1 cut(s) | 26 |
| RseI | CAYNNNNRTG | 1 cut(s) | 465 |
| SacI | GAGCTC | 1 cut(s) | 252 |
| SaqAI | TTAA | 3 cut(s) | 230, 311, 395 |
| Sau3AI | GATC | 3 cut(s) | 7, 295, 457 |
| Sau96I | GGNCC | 1 cut(s) | 199 |
| SchI | GAGTC | 1 cut(s) | 312 |
| ScrFI | CCNGG | 1 cut(s) | 221 |
| SduI | GDGCHC | 2 cut(s) | 161, 252 |
| SinI | GGWCC | 1 cut(s) | 199 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 465 |
| Sse9I | AATT | 7 cut(s) | 57, 62, 81, 190, 271, 490, 518 |
| SsiI | CCGC | 1 cut(s) | 539 |
| SspMI | CTAG | 2 cut(s) | 11, 266 |
| SstI | GAGCTC | 1 cut(s) | 252 |
| StyD4I | CCNGG | 1 cut(s) | 219 |
| StyI | CCWWGG | 1 cut(s) | 289 |
| TaqI | TCGA | 2 cut(s) | 216, 568 |
| TasI | AATT | 7 cut(s) | 57, 62, 81, 190, 271, 490, 518 |
| TfiI | GAWTC | 1 cut(s) | 205 |
| Tru1I | TTAA | 3 cut(s) | 230, 311, 395 |
| Tru9I | TTAA | 3 cut(s) | 230, 311, 395 |
| TscAI | CASTG | 2 cut(s) | 49, 349 |
| TseFI | GTSAC | 2 cut(s) | 386, 449 |
| Tsp45I | GTSAC | 2 cut(s) | 386, 449 |
| TspDTI | ATGAA | 3 cut(s) | 197, 432, 611 |
| TspRI | CASTG | 2 cut(s) | 49, 349 |
| VpaK11BI | GGWCC | 1 cut(s) | 199 |
| XapI | RAATTY | 2 cut(s) | 62, 190 |
| XspI | CTAG | 2 cut(s) | 11, 266 |