ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 413 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 803 |
| Acc36I | ACCTGC | 3 cut(s) | 128, 274, 413 |
| AccI | GTMKAC | 1 cut(s) | 208 |
| AccII | CGCG | 1 cut(s) | 778 |
| AciI | CCGC | 2 cut(s) | 563, 785 |
| AclWI | GGATC | 1 cut(s) | 704 |
| AcoI | YGGCCR | 1 cut(s) | 143 |
| AcsI | RAATTY | 2 cut(s) | 68, 547 |
| AcvI | CACGTG | 1 cut(s) | 374 |
| AfaI | GTAC | 2 cut(s) | 454, 484 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 389, 539, 815 |
| AgsI | TTSAA | 4 cut(s) | 164, 337, 645, 765 |
| AjnI | CCWGG | 1 cut(s) | 798 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 289, 321 |
| AluBI | AGCT | 3 cut(s) | 357, 701, 881 |
| AluI | AGCT | 3 cut(s) | 357, 701, 881 |
| Alw21I | GWGCWC | 1 cut(s) | 430 |
| AlwI | GGATC | 1 cut(s) | 704 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 701 |
| AoxI | GGCC | 4 cut(s) | 131, 143, 391, 845 |
| ApeKI | GCWGC | 1 cut(s) | 310 |
| ApoI | RAATTY | 2 cut(s) | 68, 547 |
| AspLEI | GCGC | 1 cut(s) | 778 |
| AspS9I | GGNCC | 2 cut(s) | 805, 845 |
| AsuHPI | GGTGA | 3 cut(s) | 64, 543, 842 |
| AsuNHI | GCTAGC | 1 cut(s) | 877 |
| AvaII | GGWCC | 1 cut(s) | 805 |
| BalI | TGGCCA | 1 cut(s) | 145 |
| BauI | CACGAG | 1 cut(s) | 220 |
| BbrPI | CACGTG | 1 cut(s) | 374 |
| BbsI | GAAGAC | 2 cut(s) | 173, 453 |
| Bbv12I | GWGCWC | 1 cut(s) | 430 |
| BbvI | GCAGC | 1 cut(s) | 297 |
| BccI | CCATC | 2 cut(s) | 562, 836 |
| BceAI | ACGGC | 1 cut(s) | 576 |
| BciT130I | CCWGG | 1 cut(s) | 800 |
| BclI | TGATCA | 1 cut(s) | 703 |
| BfaI | CTAG | 4 cut(s) | 399, 614, 827, 878 |
| BfmI | CTRYAG | 1 cut(s) | 627 |
| BfuAI | ACCTGC | 3 cut(s) | 128, 274, 413 |
| BisI | GCNGC | 2 cut(s) | 311, 786 |
| BlsI | GCNGC | 2 cut(s) | 312, 787 |
| Bme1390I | CCNGG | 1 cut(s) | 800 |
| Bme18I | GGWCC | 1 cut(s) | 805 |
| BmgT120I | GGNCC | 2 cut(s) | 805, 845 |
| BmiI | GGNNCC | 2 cut(s) | 531, 807 |
| BmrFI | CCNGG | 1 cut(s) | 800 |
| BmrI | ACTGGG | 1 cut(s) | 825 |
| BmsI | GCATC | 1 cut(s) | 409 |
| BmtI | GCTAGC | 1 cut(s) | 881 |
| BmuI | ACTGGG | 1 cut(s) | 825 |
| BpiI | GAAGAC | 2 cut(s) | 173, 453 |
| BpmI | CTGGAG | 2 cut(s) | 188, 821 |
| BpuEI | CTTGAG | 3 cut(s) | 94, 335, 556 |
| BsaAI | YACGTR | 1 cut(s) | 374 |
| BsaBI | GATNNNNATC | 1 cut(s) | 708 |
| BsaWI | WCCGGW | 1 cut(s) | 598 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 31, 61, 161, 191 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 389, 539, 815 |
| Bse1I | ACTGG | 4 cut(s) | 171, 383, 696, 820 |
| Bse8I | GATNNNNATC | 1 cut(s) | 708 |
| BseBI | CCWGG | 1 cut(s) | 800 |
| BseGI | GGATG | 3 cut(s) | 424, 598, 847 |
| BseJI | GATNNNNATC | 1 cut(s) | 708 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 389, 539, 815 |
| BseMII | CTCAG | 1 cut(s) | 517 |
| BseNI | ACTGG | 4 cut(s) | 171, 383, 696, 820 |
| BseRI | GAGGAG | 1 cut(s) | 506 |
| BseXI | GCAGC | 1 cut(s) | 297 |
| Bsh1236I | CGCG | 1 cut(s) | 778 |
| BshFI | GGCC | 4 cut(s) | 133, 145, 393, 847 |
| BsiHKAI | GWGCWC | 1 cut(s) | 430 |
| BsiSI | CCGG | 2 cut(s) | 390, 599 |
| BslFI | GGGAC | 1 cut(s) | 791 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 389, 539, 815 |
| BsmFI | GGGAC | 1 cut(s) | 791 |
| BsnI | GGCC | 4 cut(s) | 133, 145, 393, 847 |
| Bsp1286I | GDGCHC | 1 cut(s) | 430 |
| Bsp143I | GATC | 4 cut(s) | 376, 583, 703, 709 |
| BspACI | CCGC | 2 cut(s) | 563, 785 |
| BspANI | GGCC | 4 cut(s) | 133, 145, 393, 847 |
| BspCNI | CTCAG | 1 cut(s) | 516 |
| BspFNI | CGCG | 1 cut(s) | 778 |
| BspLI | GGNNCC | 2 cut(s) | 531, 807 |
| BspMAI | CTGCAG | 1 cut(s) | 631 |
| BspMI | ACCTGC | 3 cut(s) | 128, 274, 413 |
| BspOI | GCTAGC | 1 cut(s) | 881 |
| BspPI | GGATC | 1 cut(s) | 704 |
| BsrI | ACTGG | 4 cut(s) | 171, 383, 696, 820 |
| BssMI | GATC | 4 cut(s) | 376, 583, 703, 709 |
| BssSI | CACGAG | 1 cut(s) | 220 |
| Bst2BI | CACGAG | 1 cut(s) | 220 |
| Bst2UI | CCWGG | 1 cut(s) | 800 |
| Bst4CI | ACNGT | 2 cut(s) | 213, 452 |
| BstBAI | YACGTR | 1 cut(s) | 374 |
| BstC8I | GCNNGC | 2 cut(s) | 135, 879 |
| BstDEI | CTNAG | 2 cut(s) | 503, 741 |
| BstF5I | GGATG | 3 cut(s) | 424, 598, 847 |
| BstFNI | CGCG | 1 cut(s) | 778 |
| BstHHI | GCGC | 1 cut(s) | 778 |
| BstKTI | GATC | 4 cut(s) | 379, 586, 706, 712 |
| BstMBI | GATC | 4 cut(s) | 376, 583, 703, 709 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 275, 316, 782 |
| BstNI | CCWGG | 1 cut(s) | 800 |
| BstSCI | CCNGG | 1 cut(s) | 798 |
| BstSFI | CTRYAG | 1 cut(s) | 627 |
| BstUI | CGCG | 1 cut(s) | 778 |
| BstV1I | GCAGC | 1 cut(s) | 297 |
| BstV2I | GAAGAC | 2 cut(s) | 173, 453 |
| BstX2I | RGATCY | 1 cut(s) | 709 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 141 |
| BstYI | RGATCY | 1 cut(s) | 709 |
| BsuRI | GGCC | 4 cut(s) | 133, 145, 393, 847 |
| BtsCI | GGATG | 3 cut(s) | 424, 598, 847 |
| BtsI | GCAGTG | 1 cut(s) | 326 |
| BtsIMutI | CAGTG | 1 cut(s) | 326 |
| BveI | ACCTGC | 3 cut(s) | 128, 274, 413 |
| Cac8I | GCNNGC | 2 cut(s) | 135, 879 |
| CaiI | CAGNNNCTG | 1 cut(s) | 701 |
| CfoI | GCGC | 1 cut(s) | 778 |
| Cfr13I | GGNCC | 2 cut(s) | 805, 845 |
| CseI | GACGC | 1 cut(s) | 284 |
| Csp6I | GTAC | 2 cut(s) | 453, 483 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 447, 460, 482, 495 |
| CviAII | CATG | 2 cut(s) | 714, 872 |
| CviQI | GTAC | 2 cut(s) | 453, 483 |
| DdeI | CTNAG | 2 cut(s) | 503, 741 |
| DpnI | GATC | 4 cut(s) | 378, 585, 705, 711 |
| DpnII | GATC | 4 cut(s) | 376, 583, 703, 709 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 803 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 803 |
| EaeI | YGGCCR | 1 cut(s) | 143 |
| EciI | GGCGGA | 1 cut(s) | 578 |
| Eco47I | GGWCC | 1 cut(s) | 805 |
| Eco72I | CACGTG | 1 cut(s) | 374 |
| EcoO109I | RGGNCCY | 1 cut(s) | 805 |
| EcoRI | GAATTC | 2 cut(s) | 68, 547 |
| EcoRII | CCWGG | 1 cut(s) | 798 |
| FaeI | CATG | 2 cut(s) | 717, 875 |
| FaiI | YATR | 7 cut(s) | 174, 273, 284, 365, 715, 873, 884 |
| FaqI | GGGAC | 1 cut(s) | 791 |
| FatI | CATG | 2 cut(s) | 713, 871 |
| FbaI | TGATCA | 1 cut(s) | 703 |
| FblI | GTMKAC | 1 cut(s) | 208 |
| Fnu4HI | GCNGC | 2 cut(s) | 311, 786 |
| FokI | GGATG | 3 cut(s) | 431, 605, 854 |
| Fsp4HI | GCNGC | 2 cut(s) | 311, 786 |
| FspBI | CTAG | 4 cut(s) | 399, 614, 827, 878 |
| GlaI | GCGC | 1 cut(s) | 777 |
| GluI | GCNGC | 2 cut(s) | 311, 786 |
| GsuI | CTGGAG | 2 cut(s) | 188, 821 |
| HaeIII | GGCC | 4 cut(s) | 133, 145, 393, 847 |
| HapII | CCGG | 2 cut(s) | 390, 599 |
| HgaI | GACGC | 1 cut(s) | 284 |
| HhaI | GCGC | 1 cut(s) | 778 |
| Hin1II | CATG | 2 cut(s) | 717, 875 |
| Hin6I | GCGC | 1 cut(s) | 776 |
| HinP1I | GCGC | 1 cut(s) | 776 |
| HincII | GTYRAC | 2 cut(s) | 124, 796 |
| HindII | GTYRAC | 2 cut(s) | 124, 796 |
| HinfI | GANTC | 2 cut(s) | 78, 653 |
| HpaII | CCGG | 2 cut(s) | 390, 599 |
| HphI | GGTGA | 3 cut(s) | 64, 543, 842 |
| Hpy166II | GTNNAC | 5 cut(s) | 124, 209, 469, 796, 862 |
| Hpy188I | TCNGA | 3 cut(s) | 111, 506, 546 |
| Hpy188III | TCNNGA | 2 cut(s) | 73, 707 |
| Hpy8I | GTNNAC | 5 cut(s) | 124, 209, 469, 796, 862 |
| HpyAV | CCTTC | 2 cut(s) | 566, 749 |
| HpyCH4III | ACNGT | 2 cut(s) | 213, 452 |
| HpyCH4IV | ACGT | 1 cut(s) | 373 |
| HpyCH4V | TGCA | 2 cut(s) | 422, 629 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 275, 316, 782 |
| HpyF3I | CTNAG | 2 cut(s) | 503, 741 |
| HpySE526I | ACGT | 1 cut(s) | 373 |
| Hsp92II | CATG | 2 cut(s) | 717, 875 |
| HspAI | GCGC | 1 cut(s) | 776 |
| Ksp22I | TGATCA | 1 cut(s) | 703 |
| Kzo9I | GATC | 4 cut(s) | 376, 583, 703, 709 |
| Lsp1109I | GCAGC | 1 cut(s) | 297 |
| LweI | GCATC | 1 cut(s) | 409 |
| MaeI | CTAG | 4 cut(s) | 399, 614, 827, 878 |
| MaeII | ACGT | 1 cut(s) | 373 |
| MaeIII | GTNAC | 1 cut(s) | 213 |
| MalI | GATC | 4 cut(s) | 378, 585, 705, 711 |
| MboI | GATC | 4 cut(s) | 376, 583, 703, 709 |
| MboII | GAAGA | 5 cut(s) | 173, 371, 422, 458, 534 |
| MfeI | CAATTG | 1 cut(s) | 15 |
| MflI | RGATCY | 1 cut(s) | 709 |
| MhlI | GDGCHC | 1 cut(s) | 430 |
| MlsI | TGGCCA | 1 cut(s) | 145 |
| MluCI | AATT | 5 cut(s) | 15, 68, 254, 547, 645 |
| MluNI | TGGCCA | 1 cut(s) | 145 |
| MmeI | TCCRAC | 1 cut(s) | 524 |
| Mox20I | TGGCCA | 1 cut(s) | 145 |
| MscI | TGGCCA | 1 cut(s) | 145 |
| MseI | TTAA | 2 cut(s) | 236, 812 |
| Msp20I | TGGCCA | 1 cut(s) | 145 |
| MspI | CCGG | 2 cut(s) | 390, 599 |
| MspR9I | CCNGG | 1 cut(s) | 800 |
| MunI | CAATTG | 1 cut(s) | 15 |
| MvaI | CCWGG | 1 cut(s) | 800 |
| MvnI | CGCG | 1 cut(s) | 778 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 275, 316, 782 |
| NdeII | GATC | 4 cut(s) | 376, 583, 703, 709 |
| NheI | GCTAGC | 1 cut(s) | 877 |
| NlaIII | CATG | 2 cut(s) | 717, 875 |
| NlaIV | GGNNCC | 2 cut(s) | 531, 807 |
| NmuCI | GTSAC | 1 cut(s) | 213 |
| PaqCI | CACCTGC | 1 cut(s) | 413 |
| PfeI | GAWTC | 2 cut(s) | 78, 653 |
| PkrI | GCNGC | 2 cut(s) | 312, 787 |
| PmaCI | CACGTG | 1 cut(s) | 374 |
| PmlI | CACGTG | 1 cut(s) | 374 |
| Ppu21I | YACGTR | 1 cut(s) | 374 |
| PpuMI | RGGWCCY | 1 cut(s) | 805 |
| Psp5II | RGGWCCY | 1 cut(s) | 805 |
| Psp6I | CCWGG | 1 cut(s) | 798 |
| PspCI | CACGTG | 1 cut(s) | 374 |
| PspGI | CCWGG | 1 cut(s) | 798 |
| PspN4I | GGNNCC | 2 cut(s) | 531, 807 |
| PspPI | GGNCC | 2 cut(s) | 805, 845 |
| PspPPI | RGGWCCY | 1 cut(s) | 805 |
| PstI | CTGCAG | 1 cut(s) | 631 |
| PstNI | CAGNNNCTG | 1 cut(s) | 701 |
| PsuI | RGATCY | 1 cut(s) | 709 |
| RsaI | GTAC | 2 cut(s) | 454, 484 |
| RsaNI | GTAC | 2 cut(s) | 453, 483 |
| SaqAI | TTAA | 2 cut(s) | 236, 812 |
| SatI | GCNGC | 2 cut(s) | 311, 786 |
| Sau3AI | GATC | 4 cut(s) | 376, 583, 703, 709 |
| Sau96I | GGNCC | 2 cut(s) | 805, 845 |
| ScrFI | CCNGG | 1 cut(s) | 800 |
| SduI | GDGCHC | 1 cut(s) | 430 |
| SfaNI | GCATC | 1 cut(s) | 409 |
| SfcI | CTRYAG | 1 cut(s) | 627 |
| SinI | GGWCC | 1 cut(s) | 805 |
| SmlI | CTYRAG | 3 cut(s) | 73, 314, 535 |
| SmoI | CTYRAG | 3 cut(s) | 73, 314, 535 |
| Sse9I | AATT | 5 cut(s) | 15, 68, 254, 547, 645 |
| SsiI | CCGC | 2 cut(s) | 563, 785 |
| SspMI | CTAG | 4 cut(s) | 399, 614, 827, 878 |
| StyD4I | CCNGG | 1 cut(s) | 798 |
| TaaI | ACNGT | 2 cut(s) | 213, 452 |
| TaiI | ACGT | 1 cut(s) | 376 |
| TasI | AATT | 5 cut(s) | 15, 68, 254, 547, 645 |
| TauI | GCSGC | 1 cut(s) | 788 |
| TfiI | GAWTC | 2 cut(s) | 78, 653 |
| Tru1I | TTAA | 2 cut(s) | 236, 812 |
| Tru9I | TTAA | 2 cut(s) | 236, 812 |
| TscAI | CASTG | 1 cut(s) | 326 |
| TseFI | GTSAC | 1 cut(s) | 213 |
| TseI | GCWGC | 1 cut(s) | 310 |
| Tsp45I | GTSAC | 1 cut(s) | 213 |
| TspDTI | ATGAA | 2 cut(s) | 299, 513 |
| TspRI | CASTG | 1 cut(s) | 326 |
| VpaK11BI | GGWCC | 1 cut(s) | 805 |
| XapI | RAATTY | 2 cut(s) | 68, 547 |
| XmiI | GTMKAC | 1 cut(s) | 208 |
| XspI | CTAG | 4 cut(s) | 399, 614, 827, 878 |