Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 254, 917 |
| Acc36I | ACCTGC | 1 cut(s) | 478 |
| AclWI | GGATC | 5 cut(s) | 108, 555, 674, 866, 879 |
| AcsI | RAATTY | 2 cut(s) | 855, 911 |
| AfaI | GTAC | 1 cut(s) | 20 |
| AflIII | ACRYGT | 2 cut(s) | 640, 842 |
| AgsI | TTSAA | 5 cut(s) | 40, 349, 778, 803, 829 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 419, 451 |
| AluBI | AGCT | 6 cut(s) | 284, 296, 452, 732, 908, 921 |
| AluI | AGCT | 6 cut(s) | 284, 296, 452, 732, 908, 921 |
| Alw21I | GWGCWC | 1 cut(s) | 332 |
| AlwI | GGATC | 5 cut(s) | 108, 555, 674, 866, 879 |
| AoxI | GGCC | 2 cut(s) | 554, 850 |
| ApeKI | GCWGC | 3 cut(s) | 272, 360, 363 |
| ApoI | RAATTY | 2 cut(s) | 855, 911 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 297 |
| AspS9I | GGNCC | 1 cut(s) | 850 |
| BamHI | GGATCC | 1 cut(s) | 871 |
| Bbv12I | GWGCWC | 1 cut(s) | 332 |
| BbvI | GCAGC | 3 cut(s) | 284, 347, 350 |
| BccI | CCATC | 4 cut(s) | 13, 113, 192, 542 |
| BciVI | GTATCC | 1 cut(s) | 788 |
| BfaI | CTAG | 5 cut(s) | 285, 410, 468, 495, 528 |
| BfuAI | ACCTGC | 1 cut(s) | 478 |
| BfuI | GTATCC | 1 cut(s) | 788 |
| BisI | GCNGC | 3 cut(s) | 273, 361, 364 |
| BlsI | GCNGC | 3 cut(s) | 274, 362, 365 |
| BmgT120I | GGNCC | 1 cut(s) | 850 |
| BmiI | GGNNCC | 1 cut(s) | 873 |
| Bpu10I | CCTNAGC | 1 cut(s) | 630 |
| BpuEI | CTTGAG | 1 cut(s) | 905 |
| BsaJI | CCNNGG | 2 cut(s) | 264, 458 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 610, 640 |
| Bse1I | ACTGG | 1 cut(s) | 383 |
| Bse3DI | GCAATG | 1 cut(s) | 105 |
| BseDI | CCNNGG | 2 cut(s) | 264, 458 |
| BseGI | GGATG | 4 cut(s) | 5, 184, 448, 580 |
| BseMI | GCAATG | 1 cut(s) | 105 |
| BseNI | ACTGG | 1 cut(s) | 383 |
| BseRI | GAGGAG | 1 cut(s) | 902 |
| BseXI | GCAGC | 3 cut(s) | 284, 347, 350 |
| BsgI | GTGCAG | 1 cut(s) | 341 |
| BshFI | GGCC | 2 cut(s) | 556, 852 |
| BsiHKAI | GWGCWC | 1 cut(s) | 332 |
| BslFI | GGGAC | 2 cut(s) | 302, 777 |
| BsmFI | GGGAC | 2 cut(s) | 302, 777 |
| BsnI | GGCC | 2 cut(s) | 556, 852 |
| Bsp1286I | GDGCHC | 1 cut(s) | 332 |
| Bsp143I | GATC | 5 cut(s) | 65, 100, 547, 679, 871 |
| Bsp19I | CCATGG | 2 cut(s) | 264, 458 |
| BspANI | GGCC | 2 cut(s) | 556, 852 |
| BspLI | GGNNCC | 1 cut(s) | 873 |
| BspMI | ACCTGC | 1 cut(s) | 478 |
| BspPI | GGATC | 5 cut(s) | 108, 555, 674, 866, 879 |
| BsrDI | GCAATG | 1 cut(s) | 105 |
| BsrI | ACTGG | 1 cut(s) | 383 |
| BssECI | CCNNGG | 2 cut(s) | 264, 458 |
| BssMI | GATC | 5 cut(s) | 65, 100, 547, 679, 871 |
| BssT1I | CCWWGG | 2 cut(s) | 264, 458 |
| Bst4CI | ACNGT | 1 cut(s) | 667 |
| BstDEI | CTNAG | 3 cut(s) | 367, 551, 630 |
| BstDSI | CCRYGG | 2 cut(s) | 264, 458 |
| BstF5I | GGATG | 4 cut(s) | 5, 184, 448, 580 |
| BstKTI | GATC | 5 cut(s) | 68, 103, 550, 682, 874 |
| BstMBI | GATC | 5 cut(s) | 65, 100, 547, 679, 871 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 281 |
| BstNSI | RCATGY | 3 cut(s) | 221, 644, 846 |
| BstV1I | GCAGC | 3 cut(s) | 284, 347, 350 |
| BstX2I | RGATCY | 3 cut(s) | 100, 547, 871 |
| BstYI | RGATCY | 3 cut(s) | 100, 547, 871 |
| BsuI | GTATCC | 1 cut(s) | 788 |
| BsuRI | GGCC | 2 cut(s) | 556, 852 |
| BtgI | CCRYGG | 2 cut(s) | 264, 458 |
| BtsCI | GGATG | 4 cut(s) | 5, 184, 448, 580 |
| BtsIMutI | CAGTG | 1 cut(s) | 324 |
| BveI | ACCTGC | 1 cut(s) | 478 |
| Cfr13I | GGNCC | 1 cut(s) | 850 |
| Csp6I | GTAC | 1 cut(s) | 19 |
| CviAII | CATG | 7 cut(s) | 33, 218, 265, 395, 459, 641, 843 |
| CviQI | GTAC | 1 cut(s) | 19 |
| DdeI | CTNAG | 3 cut(s) | 367, 551, 630 |
| DpnI | GATC | 5 cut(s) | 67, 102, 549, 681, 873 |
| DpnII | GATC | 5 cut(s) | 65, 100, 547, 679, 871 |
| Eco130I | CCWWGG | 2 cut(s) | 264, 458 |
| Eco147I | AGGCCT | 1 cut(s) | 556 |
| Eco32I | GATATC | 1 cut(s) | 652 |
| EcoRV | GATATC | 1 cut(s) | 652 |
| EcoT14I | CCWWGG | 2 cut(s) | 264, 458 |
| EcoT22I | ATGCAT | 1 cut(s) | 223 |
| ErhI | CCWWGG | 2 cut(s) | 264, 458 |
| FaeI | CATG | 7 cut(s) | 36, 221, 268, 398, 462, 644, 846 |
| FaqI | GGGAC | 2 cut(s) | 302, 777 |
| FatI | CATG | 7 cut(s) | 32, 217, 264, 394, 458, 640, 842 |
| Fnu4HI | GCNGC | 3 cut(s) | 273, 361, 364 |
| FokI | GGATG | 3 cut(s) | 171, 455, 587 |
| Fsp4HI | GCNGC | 3 cut(s) | 273, 361, 364 |
| FspBI | CTAG | 5 cut(s) | 285, 410, 468, 495, 528 |
| GluI | GCNGC | 3 cut(s) | 273, 361, 364 |
| HaeIII | GGCC | 2 cut(s) | 556, 852 |
| Hin1II | CATG | 7 cut(s) | 36, 221, 268, 398, 462, 644, 846 |
| HinfI | GANTC | 2 cut(s) | 477, 622 |
| Hpy166II | GTNNAC | 1 cut(s) | 215 |
| Hpy188I | TCNGA | 3 cut(s) | 712, 789, 861 |
| Hpy188III | TCNNGA | 3 cut(s) | 655, 677, 757 |
| Hpy8I | GTNNAC | 1 cut(s) | 215 |
| HpyAV | CCTTC | 2 cut(s) | 532, 784 |
| HpyCH4III | ACNGT | 1 cut(s) | 667 |
| HpyCH4V | TGCA | 4 cut(s) | 221, 322, 394, 404 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 281 |
| HpyF3I | CTNAG | 3 cut(s) | 367, 551, 630 |
| Hsp92II | CATG | 7 cut(s) | 36, 221, 268, 398, 462, 644, 846 |
| Kzo9I | GATC | 5 cut(s) | 65, 100, 547, 679, 871 |
| LpnPI | CCDG | 6 cut(s) | 151, 221, 396, 473, 570, 696 |
| Lsp1109I | GCAGC | 3 cut(s) | 284, 347, 350 |
| MaeI | CTAG | 5 cut(s) | 285, 410, 468, 495, 528 |
| MaeIII | GTNAC | 3 cut(s) | 302, 599, 831 |
| MalI | GATC | 5 cut(s) | 67, 102, 549, 681, 873 |
| MboI | GATC | 5 cut(s) | 65, 100, 547, 679, 871 |
| MfeI | CAATTG | 1 cut(s) | 864 |
| MflI | RGATCY | 3 cut(s) | 100, 547, 871 |
| MhlI | GDGCHC | 1 cut(s) | 332 |
| MluCI | AATT | 9 cut(s) | 89, 255, 312, 350, 593, 836, 855, 864, 911 |
| Mph1103I | ATGCAT | 1 cut(s) | 223 |
| MroXI | GAANNNNTTC | 1 cut(s) | 297 |
| MseI | TTAA | 3 cut(s) | 258, 420, 839 |
| MslI | CAYNNNNRTG | 2 cut(s) | 339, 399 |
| MunI | CAATTG | 1 cut(s) | 864 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 281 |
| NcoI | CCATGG | 2 cut(s) | 264, 458 |
| NdeII | GATC | 5 cut(s) | 65, 100, 547, 679, 871 |
| NlaIII | CATG | 7 cut(s) | 36, 221, 268, 398, 462, 644, 846 |
| NlaIV | GGNNCC | 1 cut(s) | 873 |
| NmuCI | GTSAC | 1 cut(s) | 599 |
| NsiI | ATGCAT | 1 cut(s) | 223 |
| NspI | RCATGY | 3 cut(s) | 221, 644, 846 |
| PceI | AGGCCT | 1 cut(s) | 556 |
| PciI | ACATGT | 2 cut(s) | 640, 842 |
| PdmI | GAANNNNTTC | 1 cut(s) | 297 |
| PfeI | GAWTC | 2 cut(s) | 477, 622 |
| PkrI | GCNGC | 3 cut(s) | 274, 362, 365 |
| PscI | ACATGT | 2 cut(s) | 640, 842 |
| PsiI | TTATAA | 2 cut(s) | 254, 917 |
| PspN4I | GGNNCC | 1 cut(s) | 873 |
| PspPI | GGNCC | 1 cut(s) | 850 |
| PsuI | RGATCY | 3 cut(s) | 100, 547, 871 |
| RsaI | GTAC | 1 cut(s) | 20 |
| RsaNI | GTAC | 1 cut(s) | 19 |
| RseI | CAYNNNNRTG | 2 cut(s) | 339, 399 |
| SaqAI | TTAA | 3 cut(s) | 258, 420, 839 |
| SatI | GCNGC | 3 cut(s) | 273, 361, 364 |
| Sau3AI | GATC | 5 cut(s) | 65, 100, 547, 679, 871 |
| Sau96I | GGNCC | 1 cut(s) | 850 |
| SduI | GDGCHC | 1 cut(s) | 332 |
| SetI | ASST | 8 cut(s) | 286, 298, 436, 454, 492, 734, 910, 923 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 339, 399 |
| SmlI | CTYRAG | 1 cut(s) | 884 |
| SmoI | CTYRAG | 1 cut(s) | 884 |
| Sse9I | AATT | 9 cut(s) | 89, 255, 312, 350, 593, 836, 855, 864, 911 |
| SseBI | AGGCCT | 1 cut(s) | 556 |
| SspMI | CTAG | 5 cut(s) | 285, 410, 468, 495, 528 |
| StuI | AGGCCT | 1 cut(s) | 556 |
| StyI | CCWWGG | 2 cut(s) | 264, 458 |
| TaaI | ACNGT | 1 cut(s) | 667 |
| TasI | AATT | 9 cut(s) | 89, 255, 312, 350, 593, 836, 855, 864, 911 |
| TatI | WGTACW | 1 cut(s) | 18 |
| TfiI | GAWTC | 2 cut(s) | 477, 622 |
| Tru1I | TTAA | 3 cut(s) | 258, 420, 839 |
| Tru9I | TTAA | 3 cut(s) | 258, 420, 839 |
| TscAI | CASTG | 1 cut(s) | 324 |
| TseFI | GTSAC | 1 cut(s) | 599 |
| TseI | GCWGC | 3 cut(s) | 272, 360, 363 |
| Tsp45I | GTSAC | 1 cut(s) | 599 |
| TspDTI | ATGAA | 6 cut(s) | 171, 294, 411, 462, 530, 805 |
| TspGWI | ACGGA | 1 cut(s) | 177 |
| TspRI | CASTG | 1 cut(s) | 324 |
| XapI | RAATTY | 2 cut(s) | 855, 911 |
| XceI | RCATGY | 3 cut(s) | 221, 644, 846 |
| XmnI | GAANNNNTTC | 1 cut(s) | 297 |
| XspI | CTAG | 5 cut(s) | 285, 410, 468, 495, 528 |
| Zsp2I | ATGCAT | 1 cut(s) | 223 |