Rroxscaffold_5G00373970

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000022
Physical Location & Seq
Reverse (-)
55051973 .. 55053493
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00373970.1

Sequence Viewer

Length: 1350 bp
ATGTCCTGGTTCCCTCCCATCATCGTAGAAGGATGGAATCTGCTTTCGCACTATCTTTGCATGATGGAGGAGGTGATTGGTGGCTTTGTTCGTAAACTGGCACTGACAGAAGCGGCTGAAACAACAGCTGAAAGGGGTCTTTGGGTTCCAGATGCGGCTCCCTCTGATCGTTCCAGGATGGTAACTTGCCAATTGGATGGGAGTTGTAGAATCTTGTTCTCTTTATCCTATGAATCTGATTTGAAGTGGGTTGTTTCGAGAGATCCTTGGTCTTTTGAGCGGGCTCTTTTTTCTATTGCAGTGACAGATGGCACGGTGGATCCTCTTAGAGTTTCTTTACAAACTCAATACTTCTGGTTGAGGATTTGCGAAATTCCTTCGCTCTATATGGATGAAGTAACTGGCAAGGGCATTGGAGATGCAGTTGGTACTTATGTTCGAACGGGCAAAGATAAAAATGGTAGCTGCCTGGGCAGGTACCTTAGGGTTCGTGTTGGAATCGATATTGAGCAGCCATTGCGTAAGGGAATCGCCATTCCGCGTGCTACTTGGTCGGCCAGTAAACTCTTTGAACTGGAGTATGAGAGATTACCACACCTCTGCCTTTTCTGTGGAATGATCTCTCATATTGGGTTCAGCTGCCCTAGAAGAATGTCAGGTGAAATTAGGGAACATACTTATGATGTCCTCCTCAATGCAGAGAAGAAGGAAGCGTGGCTGGCCAAGGTAGAACGGGAGAGGGAGGAGGCGGTGACTGCTTCCGGGGAGGTGGCTGAACCCGTTATCCCTACACCCAGAGATGCGAATGACATGGAGATTGTGACTGATGATACGGCAGTGGGAGGTTCCGGTGAGGCTGCTGCCAAGAAGAGGAGGTTGGAGGAGCGGCTGAGCAAATTGGAGAAGGCGAAGGAGGGTGGACTGACGGAGGTGCCTGTTTTGGGAAGTGACAATTTTCGGAAGGCCATTAACTCCCCTGCTACGATTGCGCAGTCATCATTATCACATTCCATTGAAGGAAGATTTCCTCTGATTACAGATCAGAATTTAATGGAAAAGCAGTCAGCTGGTTTGATTAGTAGTTTTGGGACTGATCAGGCAGATCCGTTGTTAAAAGACATGATTTTGGGATCTAGCAGTAAGGCTTTGATTAAGGGACATGGTAGTCAAGTTGAGGGGCCTGTTGCACAGTCTGTGGACGTCAGCAAGTTTCAGCAACAGTCTGGGCCCGGGCCCGAGCCCAACAATCTTAGTAAGGAGCAGGCCACGGTGGGTATGGCAGTTGGAGCCCAACATGGGGTCAAAGTCACAAAGGGGCAAGAAGCAGGCCGATCTTTCTCCTTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

449

Amino Acids

49.23

Weight (kDa)

5.7

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1164
AatII GACGTC 1 cut(s) 1203
Acc16I TGCGCA 1 cut(s) 990
Acc36I ACCTGC 1 cut(s) 465
Acc65I GGTACC 1 cut(s) 477
AccB1I GGYRCC 2 cut(s) 477, 931
AccBSI CCGCTC 2 cut(s) 280, 886
AccII CGCG 1 cut(s) 541
AciI CCGC 6 cut(s) 113, 155, 280, 539, 749, 886
AclWI GGATC 5 cut(s) 257, 314, 327, 1097, 1138
AcoI YGGCCR 2 cut(s) 555, 720
AcsI RAATTY 2 cut(s) 372, 1045
AcuI CTGAAG 1 cut(s) 1327
AcyI GRCGYC 1 cut(s) 1200
AfaI GTAC 2 cut(s) 430, 479
AfiI CCNNNNNNNGG 4 cut(s) 870, 941, 1296, 1297
AgsI TTSAA 3 cut(s) 244, 572, 1016
AjnI CCWGG 3 cut(s) 5, 173, 468
AjuI GAANNNNNNNTTGG 2 cut(s) 860, 892
AloI GAACNNNNNNTCC 2 cut(s) 768, 800
AluBI AGCT 4 cut(s) 128, 465, 639, 1067
AluI AGCT 4 cut(s) 128, 465, 639, 1067
AlwI GGATC 5 cut(s) 257, 314, 327, 1097, 1138
Ama87I CYCGRG 2 cut(s) 1229, 1235
AoxI GGCC 8 cut(s) 555, 720, 963, 1178, 1226, 1232, 1263, 1327
ApaI GGGCCC 2 cut(s) 1230, 1236
ApeKI GCWGC 5 cut(s) 465, 511, 639, 857, 860
ApoI RAATTY 2 cut(s) 372, 1045
Asp718I GGTACC 1 cut(s) 477
AspLEI GCGC 1 cut(s) 991
AspS9I GGNCC 5 cut(s) 1178, 1226, 1227, 1232, 1233
AsuC2I CCSGG 3 cut(s) 763, 1230, 1231
AsuHPI GGTGA 4 cut(s) 85, 671, 763, 863
AsuII TTCGAA 1 cut(s) 439
AvaI CYCGRG 2 cut(s) 1229, 1235
AxyI CCTNAGG 1 cut(s) 482
BaeGI GKGCMC 2 cut(s) 1230, 1236
BaeI ACNNNNGTAYC 4 cut(s) 420, 453, 822, 855
BalI TGGCCA 1 cut(s) 722
BamHI GGATCC 1 cut(s) 319
BanI GGYRCC 2 cut(s) 477, 931
BanII GRGCYC 5 cut(s) 286, 1230, 1236, 1242, 1291
BbvI GCAGC 5 cut(s) 452, 523, 626, 844, 847
BccI CCATC 6 cut(s) 26, 27, 58, 172, 191, 302
BceAI ACGGC 1 cut(s) 849
BciT130I CCWGG 3 cut(s) 7, 175, 470
BclI TGATCA 1 cut(s) 1093
BcnI CCSGG 3 cut(s) 763, 1230, 1231
BfaI CTAG 2 cut(s) 645, 1134
BfuAI ACCTGC 1 cut(s) 465
BisI GCNGC 8 cut(s) 114, 156, 466, 512, 640, 858, 861, 887
BlpI GCTNAGC 1 cut(s) 890
BlsI GCNGC 8 cut(s) 115, 157, 467, 513, 641, 859, 862, 888
Bme1390I CCNGG 6 cut(s) 7, 175, 470, 763, 1230, 1231
BmeT110I CYCGRG 2 cut(s) 1229, 1235
BmgT120I GGNCC 5 cut(s) 1178, 1226, 1227, 1232, 1233
BmrFI CCNGG 6 cut(s) 7, 175, 470, 763, 1230, 1231
BmsI GCATC 3 cut(s) 142, 409, 790
BpmI CTGGAG 1 cut(s) 596
Bpu1102I GCTNAGC 1 cut(s) 890
Bpu14I TTCGAA 1 cut(s) 439
BpuMI CCSGG 3 cut(s) 763, 1230, 1231
Bsa29I ATCGAT 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 1200
BsaJI CCNNGG 6 cut(s) 266, 469, 723, 762, 1229, 1266
BsaWI WCCGGW 1 cut(s) 848
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 4 cut(s) 870, 941, 1296, 1297
Bse1I ACTGG 4 cut(s) 102, 406, 558, 579
Bse21I CCTNAGG 1 cut(s) 482
Bse3DI GCAATG 1 cut(s) 515
BseBI CCWGG 3 cut(s) 7, 175, 470
BseCI ATCGAT 1 cut(s) 501
BseDI CCNNGG 6 cut(s) 266, 469, 723, 762, 1229, 1266
BseGI GGATG 4 cut(s) 38, 183, 202, 397
BseLI CCNNNNNNNGG 4 cut(s) 870, 941, 1296, 1297
BseMI GCAATG 1 cut(s) 515
BseMII CTCAG 1 cut(s) 881
BseNI ACTGG 4 cut(s) 102, 406, 558, 579
BseRI GAGGAG 5 cut(s) 83, 680, 758, 886, 896
BseSI GKGCMC 2 cut(s) 1230, 1236
BseXI GCAGC 5 cut(s) 452, 523, 626, 844, 847
Bsh1236I CGCG 1 cut(s) 541
BshFI GGCC 8 cut(s) 557, 722, 965, 1180, 1228, 1234, 1265, 1329
BshNI GGYRCC 2 cut(s) 477, 931
BshVI ATCGAT 1 cut(s) 501
BsiHKCI CYCGRG 2 cut(s) 1229, 1235
BsiSI CCGG 3 cut(s) 762, 849, 1230
BslFI GGGAC 2 cut(s) 1102, 1170
BslI CCNNNNNNNGG 4 cut(s) 870, 941, 1296, 1297
BsmFI GGGAC 2 cut(s) 1102, 1170
BsnI GGCC 8 cut(s) 557, 722, 965, 1180, 1228, 1234, 1265, 1329
BsoBI CYCGRG 2 cut(s) 1229, 1235
Bsp119I TTCGAA 1 cut(s) 439
Bsp120I GGGCCC 2 cut(s) 1226, 1232
Bsp1286I GDGCHC 5 cut(s) 286, 1230, 1236, 1242, 1291
Bsp143I GATC 9 cut(s) 166, 262, 319, 618, 1039, 1093, 1102, 1130, 1331
Bsp1720I GCTNAGC 1 cut(s) 890
BspACI CCGC 6 cut(s) 113, 155, 280, 539, 749, 886
BspANI GGCC 8 cut(s) 557, 722, 965, 1180, 1228, 1234, 1265, 1329
BspCNI CTCAG 1 cut(s) 882
BspDI ATCGAT 1 cut(s) 501
BspFNI CGCG 1 cut(s) 541
BspMI ACCTGC 1 cut(s) 465
BspPI GGATC 5 cut(s) 257, 314, 327, 1097, 1138
BspT104I TTCGAA 1 cut(s) 439
BspT107I GGYRCC 2 cut(s) 477, 931
BsrBI CCGCTC 2 cut(s) 280, 886
BsrDI GCAATG 1 cut(s) 515
BsrI ACTGG 4 cut(s) 102, 406, 558, 579
BssECI CCNNGG 6 cut(s) 266, 469, 723, 762, 1229, 1266
BssMI GATC 9 cut(s) 166, 262, 319, 618, 1039, 1093, 1102, 1130, 1331
BssNI GRCGYC 1 cut(s) 1200
BssT1I CCWWGG 2 cut(s) 266, 723
Bst2UI CCWGG 3 cut(s) 7, 175, 470
Bst4CI ACNGT 4 cut(s) 316, 1191, 1221, 1270
Bst6I CTCTTC 1 cut(s) 863
BstACI GRCGYC 1 cut(s) 1200
BstAPI GCANNNNNTGC 1 cut(s) 517
BstBI TTCGAA 1 cut(s) 439
BstC8I GCNNGC 5 cut(s) 282, 543, 720, 1263, 1327
BstDEI CTNAG 4 cut(s) 326, 482, 890, 1250
BstDSI CCRYGG 1 cut(s) 1266
BstF5I GGATG 4 cut(s) 38, 183, 202, 397
BstFNI CGCG 1 cut(s) 541
BstHHI GCGC 1 cut(s) 991
BstKTI GATC 9 cut(s) 169, 265, 322, 621, 1042, 1096, 1105, 1133, 1334
BstMBI GATC 9 cut(s) 166, 262, 319, 618, 1039, 1093, 1102, 1130, 1331
BstMWI GCNNNNNNNGC 6 cut(s) 471, 517, 719, 755, 986, 1286
BstNI CCWGG 3 cut(s) 7, 175, 470
BstSCI CCNGG 6 cut(s) 5, 173, 468, 761, 1228, 1229
BstSLI GKGCMC 2 cut(s) 1230, 1236
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 5 cut(s) 452, 523, 626, 844, 847
BstX2I RGATCY 4 cut(s) 262, 319, 1102, 1130
BstXI CCANNNNNNTGG 1 cut(s) 197
BstYI RGATCY 4 cut(s) 262, 319, 1102, 1130
Bsu15I ATCGAT 1 cut(s) 501
Bsu36I CCTNAGG 1 cut(s) 482
BsuRI GGCC 8 cut(s) 557, 722, 965, 1180, 1228, 1234, 1265, 1329
BsuTUI ATCGAT 1 cut(s) 501
BtgI CCRYGG 1 cut(s) 1266
BtsCI GGATG 4 cut(s) 38, 183, 202, 397
BtsI GCAGTG 2 cut(s) 306, 843
BtsIMutI CAGTG 3 cut(s) 101, 306, 843
BveI ACCTGC 1 cut(s) 465
Cac8I GCNNGC 5 cut(s) 282, 543, 720, 1263, 1327
CfoI GCGC 1 cut(s) 991
Cfr13I GGNCC 5 cut(s) 1178, 1226, 1227, 1232, 1233
Cfr9I CCCGGG 1 cut(s) 1229
ClaI ATCGAT 1 cut(s) 501
Csp6I GTAC 2 cut(s) 429, 478
CviAII CATG 5 cut(s) 61, 811, 1120, 1160, 1295
CviQI GTAC 2 cut(s) 429, 478
DdeI CTNAG 4 cut(s) 326, 482, 890, 1250
DpnI GATC 9 cut(s) 168, 264, 321, 620, 1041, 1095, 1104, 1132, 1333
DpnII GATC 9 cut(s) 166, 262, 319, 618, 1039, 1093, 1102, 1130, 1331
DrdI GACNNNNNNGTC 1 cut(s) 1164
DseDI GACNNNNNNGTC 1 cut(s) 1164
EaeI YGGCCR 2 cut(s) 555, 720
Eam1104I CTCTTC 1 cut(s) 863
EarI CTCTTC 1 cut(s) 863
Eco130I CCWWGG 2 cut(s) 266, 723
Eco24I GRGCYC 5 cut(s) 286, 1230, 1236, 1242, 1291
Eco57I CTGAAG 1 cut(s) 1327
Eco81I CCTNAGG 1 cut(s) 482
Eco88I CYCGRG 2 cut(s) 1229, 1235
EcoO109I RGGNCCY 1 cut(s) 1178
EcoRII CCWGG 3 cut(s) 5, 173, 468
EcoT14I CCWWGG 2 cut(s) 266, 723
EcoT38I GRGCYC 5 cut(s) 286, 1230, 1236, 1242, 1291
ErhI CCWWGG 2 cut(s) 266, 723
FaeI CATG 5 cut(s) 64, 814, 1123, 1163, 1298
FaqI GGGAC 2 cut(s) 1102, 1170
FatI CATG 5 cut(s) 60, 810, 1119, 1159, 1294
FauI CCCGC 1 cut(s) 273
FbaI TGATCA 1 cut(s) 1093
Fnu4HI GCNGC 8 cut(s) 114, 156, 466, 512, 640, 858, 861, 887
FokI GGATG 4 cut(s) 45, 190, 209, 404
FriOI GRGCYC 5 cut(s) 286, 1230, 1236, 1242, 1291
Fsp4HI GCNGC 8 cut(s) 114, 156, 466, 512, 640, 858, 861, 887
FspBI CTAG 2 cut(s) 645, 1134
FspI TGCGCA 1 cut(s) 990
GlaI GCGC 1 cut(s) 990
GluI GCNGC 8 cut(s) 114, 156, 466, 512, 640, 858, 861, 887
GsuI CTGGAG 1 cut(s) 596
HaeIII GGCC 8 cut(s) 557, 722, 965, 1180, 1228, 1234, 1265, 1329
HapII CCGG 3 cut(s) 762, 849, 1230
HhaI GCGC 1 cut(s) 991
Hin1I GRCGYC 1 cut(s) 1200
Hin1II CATG 5 cut(s) 64, 814, 1123, 1163, 1298
Hin6I GCGC 1 cut(s) 989
HinP1I GCGC 1 cut(s) 989
HinfI GANTC 5 cut(s) 37, 210, 233, 498, 528
HpaII CCGG 3 cut(s) 762, 849, 1230
HphI GGTGA 4 cut(s) 85, 671, 763, 863
Hpy166II GTNNAC 4 cut(s) 95, 563, 920, 1198
Hpy188I TCNGA 5 cut(s) 166, 238, 960, 1032, 1044
Hpy188III TCNNGA 2 cut(s) 149, 258
Hpy8I GTNNAC 4 cut(s) 95, 563, 920, 1198
HpyAV CCTTC 7 cut(s) 23, 387, 700, 898, 904, 955, 1010
HpyCH4III ACNGT 4 cut(s) 316, 1191, 1221, 1270
HpyCH4IV ACGT 1 cut(s) 1200
HpyCH4V TGCA 5 cut(s) 60, 299, 422, 698, 1187
HpyF10VI GCNNNNNNNGC 6 cut(s) 471, 517, 719, 755, 986, 1286
HpyF3I CTNAG 4 cut(s) 326, 482, 890, 1250
HpySE526I ACGT 1 cut(s) 1200
Hsp92I GRCGYC 1 cut(s) 1200
Hsp92II CATG 5 cut(s) 64, 814, 1123, 1163, 1298
HspAI GCGC 1 cut(s) 989
KpnI GGTACC 1 cut(s) 481
Ksp22I TGATCA 1 cut(s) 1093
Kzo9I GATC 9 cut(s) 166, 262, 319, 618, 1039, 1093, 1102, 1130, 1331
LmnI GCTCC 4 cut(s) 163, 883, 1258, 1286
Lsp1109I GCAGC 5 cut(s) 452, 523, 626, 844, 847
LweI GCATC 3 cut(s) 142, 409, 790
MaeI CTAG 2 cut(s) 645, 1134
MaeII ACGT 1 cut(s) 1200
MaeIII GTNAC 7 cut(s) 181, 301, 397, 751, 820, 947, 1306
MalI GATC 9 cut(s) 168, 264, 321, 620, 1041, 1095, 1104, 1132, 1333
MbiI CCGCTC 2 cut(s) 280, 886
MboI GATC 9 cut(s) 166, 262, 319, 618, 1039, 1093, 1102, 1130, 1331
MboII GAAGA 4 cut(s) 660, 715, 880, 1032
MfeI CAATTG 1 cut(s) 191
MflI RGATCY 4 cut(s) 262, 319, 1102, 1130
MhlI GDGCHC 5 cut(s) 286, 1230, 1236, 1242, 1291
MlsI TGGCCA 1 cut(s) 722
MluCI AATT 6 cut(s) 191, 372, 663, 896, 952, 1045
MluNI TGGCCA 1 cut(s) 722
MmeI TCCRAC 3 cut(s) 475, 858, 1264
Mox20I TGGCCA 1 cut(s) 722
MscI TGGCCA 1 cut(s) 722
MseI TTAA 5 cut(s) 969, 1049, 1112, 1152, 1348
MslI CAYNNNNRTG 1 cut(s) 678
Msp20I TGGCCA 1 cut(s) 722
MspA1I CMGCKG 3 cut(s) 128, 639, 1067
MspI CCGG 3 cut(s) 762, 849, 1230
MspR9I CCNGG 6 cut(s) 7, 175, 470, 763, 1230, 1231
MunI CAATTG 1 cut(s) 191
MvaI CCWGG 3 cut(s) 7, 175, 470
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 6 cut(s) 471, 517, 719, 755, 986, 1286
NciI CCSGG 3 cut(s) 763, 1230, 1231
NdeII GATC 9 cut(s) 166, 262, 319, 618, 1039, 1093, 1102, 1130, 1331
NlaIII CATG 5 cut(s) 64, 814, 1123, 1163, 1298
NmuCI GTSAC 5 cut(s) 301, 751, 820, 947, 1306
NsbI TGCGCA 1 cut(s) 990
NspV TTCGAA 1 cut(s) 439
PfeI GAWTC 5 cut(s) 37, 210, 233, 498, 528
PfoI TCCNGGA 1 cut(s) 173
PkrI GCNGC 8 cut(s) 115, 157, 467, 513, 641, 859, 862, 888
Psp6I CCWGG 3 cut(s) 5, 173, 468
PspGI CCWGG 3 cut(s) 5, 173, 468
PspOMI GGGCCC 2 cut(s) 1226, 1232
PspPI GGNCC 5 cut(s) 1178, 1226, 1227, 1232, 1233
PsuI RGATCY 4 cut(s) 262, 319, 1102, 1130
PvuII CAGCTG 3 cut(s) 128, 639, 1067
RsaI GTAC 2 cut(s) 430, 479
RsaNI GTAC 2 cut(s) 429, 478
RseI CAYNNNNRTG 1 cut(s) 678
SaqAI TTAA 5 cut(s) 969, 1049, 1112, 1152, 1348
SatI GCNGC 8 cut(s) 114, 156, 466, 512, 640, 858, 861, 887
Sau3AI GATC 9 cut(s) 166, 262, 319, 618, 1039, 1093, 1102, 1130, 1331
Sau96I GGNCC 5 cut(s) 1178, 1226, 1227, 1232, 1233
ScrFI CCNGG 6 cut(s) 7, 175, 470, 763, 1230, 1231
SduI GDGCHC 5 cut(s) 286, 1230, 1236, 1242, 1291
SfaNI GCATC 3 cut(s) 142, 409, 790
SfuI TTCGAA 1 cut(s) 439
SmaI CCCGGG 1 cut(s) 1231
SmiMI CAYNNNNRTG 1 cut(s) 678
SrfI GCCCGGGC 1 cut(s) 1231
Sse9I AATT 6 cut(s) 191, 372, 663, 896, 952, 1045
SsiI CCGC 6 cut(s) 113, 155, 280, 539, 749, 886
SspMI CTAG 2 cut(s) 645, 1134
StyD4I CCNGG 6 cut(s) 5, 173, 468, 761, 1228, 1229
StyI CCWWGG 2 cut(s) 266, 723
TaaI ACNGT 4 cut(s) 316, 1191, 1221, 1270
TaiI ACGT 1 cut(s) 1203
TaqI TCGA 3 cut(s) 257, 439, 501
TasI AATT 6 cut(s) 191, 372, 663, 896, 952, 1045
TauI GCSGC 3 cut(s) 116, 158, 889
TfiI GAWTC 5 cut(s) 37, 210, 233, 498, 528
Tru1I TTAA 5 cut(s) 969, 1049, 1112, 1152, 1348
Tru9I TTAA 5 cut(s) 969, 1049, 1112, 1152, 1348
TscAI CASTG 3 cut(s) 108, 306, 843
TseFI GTSAC 5 cut(s) 301, 751, 820, 947, 1306
TseI GCWGC 5 cut(s) 465, 511, 639, 857, 860
Tsp45I GTSAC 5 cut(s) 301, 751, 820, 947, 1306
TspDTI ATGAA 2 cut(s) 246, 408
TspGWI ACGGA 2 cut(s) 941, 1095
TspMI CCCGGG 1 cut(s) 1229
TspRI CASTG 3 cut(s) 108, 306, 843
XapI RAATTY 2 cut(s) 372, 1045
XcmI CCANNNNNNNNNTGG 1 cut(s) 1273
XmaI CCCGGG 1 cut(s) 1229
XspI CTAG 2 cut(s) 645, 1134
ZraI GACGTC 1 cut(s) 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.