ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 32 - 105 | 2.2e-06 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 89, 410 |
| AclWI | GGATC | 1 cut(s) | 340 |
| AcoI | YGGCCR | 2 cut(s) | 16, 418 |
| AcsI | RAATTY | 1 cut(s) | 378 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AfaI | GTAC | 1 cut(s) | 375 |
| AfeI | AGCGCT | 1 cut(s) | 539 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 202 |
| AflII | CTTAAG | 1 cut(s) | 268 |
| AflIII | ACRYGT | 1 cut(s) | 519 |
| AgsI | TTSAA | 2 cut(s) | 236, 526 |
| AjiI | CACGTC | 1 cut(s) | 520 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 66, 98 |
| AluBI | AGCT | 5 cut(s) | 132, 251, 299, 473, 550 |
| AluI | AGCT | 5 cut(s) | 132, 251, 299, 473, 550 |
| Alw21I | GWGCWC | 1 cut(s) | 134 |
| Alw26I | GTCTC | 2 cut(s) | 244, 392 |
| AlwI | GGATC | 1 cut(s) | 340 |
| Aor51HI | AGCGCT | 1 cut(s) | 539 |
| AoxI | GGCC | 5 cut(s) | 16, 193, 277, 418, 442 |
| ApeKI | GCWGC | 1 cut(s) | 157 |
| ApoI | RAATTY | 1 cut(s) | 378 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 370, 402 |
| AspA2I | CCTAGG | 1 cut(s) | 439 |
| AspLEI | GCGC | 1 cut(s) | 540 |
| AspS9I | GGNCC | 3 cut(s) | 124, 278, 332 |
| AsuC2I | CCSGG | 1 cut(s) | 395 |
| AsuHPI | GGTGA | 1 cut(s) | 479 |
| AvaII | GGWCC | 2 cut(s) | 124, 332 |
| AvrII | CCTAGG | 1 cut(s) | 439 |
| BalI | TGGCCA | 1 cut(s) | 420 |
| BanII | GRGCYC | 1 cut(s) | 134 |
| Bbv12I | GWGCWC | 1 cut(s) | 134 |
| BbvI | GCAGC | 1 cut(s) | 144 |
| BceAI | ACGGC | 1 cut(s) | 3 |
| BcnI | CCSGG | 1 cut(s) | 395 |
| BcoDI | GTCTC | 2 cut(s) | 244, 392 |
| BfaI | CTAG | 1 cut(s) | 440 |
| BfoI | RGCGCY | 1 cut(s) | 541 |
| BfrI | CTTAAG | 1 cut(s) | 268 |
| BisI | GCNGC | 2 cut(s) | 90, 158 |
| BlnI | CCTAGG | 1 cut(s) | 439 |
| BlsI | GCNGC | 2 cut(s) | 91, 159 |
| Bme1390I | CCNGG | 1 cut(s) | 395 |
| Bme18I | GGWCC | 2 cut(s) | 124, 332 |
| BmgBI | CACGTC | 1 cut(s) | 520 |
| BmgT120I | GGNCC | 3 cut(s) | 124, 278, 332 |
| BmiI | GGNNCC | 2 cut(s) | 333, 334 |
| BmrFI | CCNGG | 1 cut(s) | 395 |
| BmsI | GCATC | 2 cut(s) | 307, 425 |
| Bpu10I | CCTNAGC | 1 cut(s) | 128 |
| BpuEI | CTTGAG | 1 cut(s) | 146 |
| BpuMI | CCSGG | 1 cut(s) | 395 |
| BsaI | GGTCTC | 1 cut(s) | 392 |
| BsaJI | CCNNGG | 2 cut(s) | 281, 439 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 202 |
| Bse1I | ACTGG | 1 cut(s) | 364 |
| BseDI | CCNNGG | 2 cut(s) | 281, 439 |
| BseGI | GGATG | 1 cut(s) | 418 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 202 |
| BseMII | CTCAG | 1 cut(s) | 119 |
| BseNI | ACTGG | 1 cut(s) | 364 |
| BseRI | GAGGAG | 1 cut(s) | 232 |
| BseXI | GCAGC | 1 cut(s) | 144 |
| BseYI | CCCAGC | 1 cut(s) | 473 |
| BshFI | GGCC | 5 cut(s) | 18, 195, 279, 420, 444 |
| BsiHKAI | GWGCWC | 1 cut(s) | 134 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BslFI | GGGAC | 1 cut(s) | 318 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 202 |
| BsmAI | GTCTC | 2 cut(s) | 244, 392 |
| BsmFI | GGGAC | 1 cut(s) | 318 |
| BsnI | GGCC | 5 cut(s) | 18, 195, 279, 420, 444 |
| Bso31I | GGTCTC | 1 cut(s) | 392 |
| Bsp1286I | GDGCHC | 1 cut(s) | 134 |
| Bsp143I | GATC | 3 cut(s) | 79, 345, 460 |
| BspACI | CCGC | 2 cut(s) | 89, 410 |
| BspANI | GGCC | 5 cut(s) | 18, 195, 279, 420, 444 |
| BspCNI | CTCAG | 1 cut(s) | 120 |
| BspLI | GGNNCC | 2 cut(s) | 333, 334 |
| BspPI | GGATC | 1 cut(s) | 340 |
| BspTI | CTTAAG | 1 cut(s) | 268 |
| BspTNI | GGTCTC | 1 cut(s) | 392 |
| BsrI | ACTGG | 1 cut(s) | 364 |
| BssECI | CCNNGG | 2 cut(s) | 281, 439 |
| BssMI | GATC | 3 cut(s) | 79, 345, 460 |
| BssT1I | CCWWGG | 2 cut(s) | 281, 439 |
| BstAFI | CTTAAG | 1 cut(s) | 268 |
| BstC8I | GCNNGC | 1 cut(s) | 312 |
| BstDEI | CTNAG | 2 cut(s) | 10, 128 |
| BstF5I | GGATG | 1 cut(s) | 418 |
| BstH2I | RGCGCY | 1 cut(s) | 541 |
| BstHHI | GCGC | 1 cut(s) | 540 |
| BstKTI | GATC | 3 cut(s) | 82, 348, 463 |
| BstMAI | GTCTC | 2 cut(s) | 244, 392 |
| BstMBI | GATC | 3 cut(s) | 79, 345, 460 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 535 |
| BstSCI | CCNGG | 1 cut(s) | 393 |
| BstV1I | GCAGC | 1 cut(s) | 144 |
| BsuRI | GGCC | 5 cut(s) | 18, 195, 279, 420, 444 |
| BtrI | CACGTC | 1 cut(s) | 520 |
| BtsCI | GGATG | 1 cut(s) | 418 |
| Cac8I | GCNNGC | 1 cut(s) | 312 |
| CfoI | GCGC | 1 cut(s) | 540 |
| Cfr13I | GGNCC | 3 cut(s) | 124, 278, 332 |
| Csp6I | GTAC | 1 cut(s) | 374 |
| CviAII | CATG | 1 cut(s) | 383 |
| CviQI | GTAC | 1 cut(s) | 374 |
| DdeI | CTNAG | 2 cut(s) | 10, 128 |
| DpnI | GATC | 3 cut(s) | 81, 347, 462 |
| DpnII | GATC | 3 cut(s) | 79, 345, 460 |
| EaeI | YGGCCR | 2 cut(s) | 16, 418 |
| Ecl136II | GAGCTC | 1 cut(s) | 132 |
| Eco130I | CCWWGG | 2 cut(s) | 281, 439 |
| Eco24I | GRGCYC | 1 cut(s) | 134 |
| Eco31I | GGTCTC | 1 cut(s) | 392 |
| Eco47I | GGWCC | 2 cut(s) | 124, 332 |
| Eco47III | AGCGCT | 1 cut(s) | 539 |
| Eco53kI | GAGCTC | 1 cut(s) | 132 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| EcoICRI | GAGCTC | 1 cut(s) | 132 |
| EcoO109I | RGGNCCY | 1 cut(s) | 332 |
| EcoT14I | CCWWGG | 2 cut(s) | 281, 439 |
| EcoT38I | GRGCYC | 1 cut(s) | 134 |
| ErhI | CCWWGG | 2 cut(s) | 281, 439 |
| FaeI | CATG | 1 cut(s) | 386 |
| FaiI | YATR | 4 cut(s) | 143, 145, 384, 404 |
| FaqI | GGGAC | 1 cut(s) | 318 |
| FatI | CATG | 1 cut(s) | 382 |
| FauNDI | CATATG | 1 cut(s) | 143 |
| Fnu4HI | GCNGC | 2 cut(s) | 90, 158 |
| FokI | GGATG | 1 cut(s) | 425 |
| FriOI | GRGCYC | 1 cut(s) | 134 |
| Fsp4HI | GCNGC | 2 cut(s) | 90, 158 |
| FspBI | CTAG | 1 cut(s) | 440 |
| GlaI | GCGC | 1 cut(s) | 539 |
| GluI | GCNGC | 2 cut(s) | 90, 158 |
| GsaI | CCCAGC | 1 cut(s) | 477 |
| HaeII | RGCGCY | 1 cut(s) | 541 |
| HaeIII | GGCC | 5 cut(s) | 18, 195, 279, 420, 444 |
| HapII | CCGG | 1 cut(s) | 395 |
| HhaI | GCGC | 1 cut(s) | 540 |
| Hin1II | CATG | 1 cut(s) | 386 |
| Hin6I | GCGC | 1 cut(s) | 538 |
| HinP1I | GCGC | 1 cut(s) | 538 |
| HinfI | GANTC | 3 cut(s) | 74, 264, 501 |
| HpaII | CCGG | 1 cut(s) | 395 |
| HphI | GGTGA | 1 cut(s) | 479 |
| Hpy188I | TCNGA | 3 cut(s) | 79, 247, 506 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 127, 163, 172, 261, 389 |
| Hpy99I | CGWCG | 1 cut(s) | 221 |
| HpyAV | CCTTC | 2 cut(s) | 178, 206 |
| HpyCH4IV | ACGT | 1 cut(s) | 519 |
| HpyCH4V | TGCA | 3 cut(s) | 26, 147, 428 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 535 |
| HpyF3I | CTNAG | 2 cut(s) | 10, 128 |
| HpySE526I | ACGT | 1 cut(s) | 519 |
| Hsp92II | CATG | 1 cut(s) | 386 |
| HspAI | GCGC | 1 cut(s) | 538 |
| KflI | GGGWCCC | 1 cut(s) | 332 |
| Kzo9I | GATC | 3 cut(s) | 79, 345, 460 |
| Lsp1109I | GCAGC | 1 cut(s) | 144 |
| LweI | GCATC | 2 cut(s) | 307, 425 |
| MaeI | CTAG | 1 cut(s) | 440 |
| MaeII | ACGT | 1 cut(s) | 519 |
| MalI | GATC | 3 cut(s) | 81, 347, 462 |
| MboI | GATC | 3 cut(s) | 79, 345, 460 |
| MboII | GAAGA | 1 cut(s) | 410 |
| MhlI | GDGCHC | 1 cut(s) | 134 |
| MlsI | TGGCCA | 1 cut(s) | 420 |
| MluCI | AATT | 1 cut(s) | 378 |
| MluNI | TGGCCA | 1 cut(s) | 420 |
| MlyI | GAGTC | 1 cut(s) | 510 |
| MnlI | CCTC | 5 cut(s) | 43, 44, 143, 253, 266 |
| Mox20I | TGGCCA | 1 cut(s) | 420 |
| MscI | TGGCCA | 1 cut(s) | 420 |
| MseI | TTAA | 2 cut(s) | 269, 485 |
| Msp20I | TGGCCA | 1 cut(s) | 420 |
| MspCI | CTTAAG | 1 cut(s) | 268 |
| MspI | CCGG | 1 cut(s) | 395 |
| MspR9I | CCNGG | 1 cut(s) | 395 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 535 |
| NciI | CCSGG | 1 cut(s) | 395 |
| NdeI | CATATG | 1 cut(s) | 143 |
| NdeII | GATC | 3 cut(s) | 79, 345, 460 |
| NlaIII | CATG | 1 cut(s) | 386 |
| NlaIV | GGNNCC | 2 cut(s) | 333, 334 |
| PfeI | GAWTC | 2 cut(s) | 74, 264 |
| PkrI | GCNGC | 2 cut(s) | 91, 159 |
| PleI | GAGTC | 1 cut(s) | 509 |
| PpsI | GAGTC | 1 cut(s) | 509 |
| PpuMI | RGGWCCY | 1 cut(s) | 332 |
| Psp124BI | GAGCTC | 1 cut(s) | 134 |
| Psp5II | RGGWCCY | 1 cut(s) | 332 |
| PspFI | CCCAGC | 1 cut(s) | 473 |
| PspN4I | GGNNCC | 2 cut(s) | 333, 334 |
| PspPI | GGNCC | 3 cut(s) | 124, 278, 332 |
| PspPPI | RGGWCCY | 1 cut(s) | 332 |
| RsaI | GTAC | 1 cut(s) | 375 |
| RsaNI | GTAC | 1 cut(s) | 374 |
| SacI | GAGCTC | 1 cut(s) | 134 |
| SaqAI | TTAA | 2 cut(s) | 269, 485 |
| SatI | GCNGC | 2 cut(s) | 90, 158 |
| Sau3AI | GATC | 3 cut(s) | 79, 345, 460 |
| Sau96I | GGNCC | 3 cut(s) | 124, 278, 332 |
| SchI | GAGTC | 1 cut(s) | 510 |
| ScrFI | CCNGG | 1 cut(s) | 395 |
| SduI | GDGCHC | 1 cut(s) | 134 |
| SfaNI | GCATC | 2 cut(s) | 307, 425 |
| SinI | GGWCC | 2 cut(s) | 124, 332 |
| SmlI | CTYRAG | 2 cut(s) | 161, 268 |
| SmoI | CTYRAG | 2 cut(s) | 161, 268 |
| Sse9I | AATT | 1 cut(s) | 378 |
| SsiI | CCGC | 2 cut(s) | 89, 410 |
| SspMI | CTAG | 1 cut(s) | 440 |
| SstI | GAGCTC | 1 cut(s) | 134 |
| StyD4I | CCNGG | 1 cut(s) | 393 |
| StyI | CCWWGG | 2 cut(s) | 281, 439 |
| TaiI | ACGT | 1 cut(s) | 522 |
| TaqI | TCGA | 6 cut(s) | 72, 134, 199, 287, 344, 390 |
| TasI | AATT | 1 cut(s) | 378 |
| TauI | GCSGC | 1 cut(s) | 92 |
| TfiI | GAWTC | 2 cut(s) | 74, 264 |
| Tru1I | TTAA | 2 cut(s) | 269, 485 |
| Tru9I | TTAA | 2 cut(s) | 269, 485 |
| TseI | GCWGC | 1 cut(s) | 157 |
| TspDTI | ATGAA | 1 cut(s) | 371 |
| Vha464I | CTTAAG | 1 cut(s) | 268 |
| VpaK11BI | GGWCC | 2 cut(s) | 124, 332 |
| XapI | RAATTY | 1 cut(s) | 378 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 109 |
| XmaJI | CCTAGG | 1 cut(s) | 439 |
| XspI | CTAG | 1 cut(s) | 440 |