ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 113 |
| Acc65I | GGTACC | 1 cut(s) | 298 |
| AccB1I | GGYRCC | 1 cut(s) | 298 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 988 |
| AccI | GTMKAC | 1 cut(s) | 893 |
| AciI | CCGC | 3 cut(s) | 686, 878, 1165 |
| AcsI | RAATTY | 1 cut(s) | 1264 |
| AcuI | CTGAAG | 2 cut(s) | 549, 1323 |
| AfaI | GTAC | 3 cut(s) | 300, 352, 571 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 374, 988, 1167, 1306 |
| AgsI | TTSAA | 3 cut(s) | 794, 1150, 1272 |
| AjnI | CCWGG | 2 cut(s) | 367, 981 |
| AluBI | AGCT | 3 cut(s) | 472, 1098, 1324 |
| AluI | AGCT | 3 cut(s) | 472, 1098, 1324 |
| Alw21I | GWGCWC | 2 cut(s) | 1066, 1100 |
| Alw26I | GTCTC | 1 cut(s) | 814 |
| Alw44I | GTGCAC | 1 cut(s) | 1062 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 251 |
| Ama87I | CYCGRG | 1 cut(s) | 811 |
| AoxI | GGCC | 3 cut(s) | 701, 1158, 1326 |
| ApaLI | GTGCAC | 1 cut(s) | 1062 |
| ApeKI | GCWGC | 2 cut(s) | 688, 1316 |
| ApoI | RAATTY | 1 cut(s) | 1264 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 551 |
| Asp718I | GGTACC | 1 cut(s) | 298 |
| AspS9I | GGNCC | 4 cut(s) | 37, 701, 1159, 1327 |
| AsuC2I | CCSGG | 2 cut(s) | 145, 1162 |
| AsuHPI | GGTGA | 5 cut(s) | 596, 631, 776, 1165, 1291 |
| AsuII | TTCGAA | 3 cut(s) | 67, 319, 481 |
| AvaI | CYCGRG | 1 cut(s) | 811 |
| AvaII | GGWCC | 1 cut(s) | 37 |
| BaeGI | GKGCMC | 1 cut(s) | 1066 |
| BanI | GGYRCC | 1 cut(s) | 298 |
| BanII | GRGCYC | 1 cut(s) | 1100 |
| BauI | CACGAG | 1 cut(s) | 1334 |
| Bbv12I | GWGCWC | 2 cut(s) | 1066, 1100 |
| BbvI | GCAGC | 2 cut(s) | 675, 1328 |
| BccI | CCATC | 5 cut(s) | 581, 650, 654, 868, 1150 |
| BciT130I | CCWGG | 2 cut(s) | 369, 983 |
| BciVI | GTATCC | 1 cut(s) | 1307 |
| BcnI | CCSGG | 2 cut(s) | 145, 1162 |
| BcoDI | GTCTC | 1 cut(s) | 814 |
| BfaI | CTAG | 7 cut(s) | 57, 140, 453, 473, 609, 837, 933 |
| BfuI | GTATCC | 1 cut(s) | 1307 |
| BisI | GCNGC | 4 cut(s) | 686, 689, 879, 1317 |
| BlsI | GCNGC | 4 cut(s) | 687, 690, 880, 1318 |
| Bme1390I | CCNGG | 4 cut(s) | 145, 369, 983, 1162 |
| Bme18I | GGWCC | 1 cut(s) | 37 |
| BmeT110I | CYCGRG | 1 cut(s) | 811 |
| BmgT120I | GGNCC | 4 cut(s) | 37, 701, 1159, 1327 |
| BmiI | GGNNCC | 3 cut(s) | 189, 300, 702 |
| BmrFI | CCNGG | 4 cut(s) | 145, 369, 983, 1162 |
| BmrI | ACTGGG | 1 cut(s) | 906 |
| BmsI | GCATC | 4 cut(s) | 454, 727, 728, 930 |
| BmuI | ACTGGG | 1 cut(s) | 906 |
| BoxI | GACNNNNGTC | 1 cut(s) | 35 |
| Bpu14I | TTCGAA | 3 cut(s) | 67, 319, 481 |
| BpuMI | CCSGG | 2 cut(s) | 145, 1162 |
| BsaI | GGTCTC | 1 cut(s) | 814 |
| BsaJI | CCNNGG | 3 cut(s) | 191, 368, 982 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 549, 579, 586, 616 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 374, 988, 1167, 1306 |
| Bse1I | ACTGG | 1 cut(s) | 901 |
| BseBI | CCWGG | 2 cut(s) | 369, 983 |
| BseDI | CCNNGG | 3 cut(s) | 191, 368, 982 |
| BseGI | GGATG | 6 cut(s) | 331, 445, 502, 665, 742, 1204 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 374, 988, 1167, 1306 |
| BseMII | CTCAG | 6 cut(s) | 221, 351, 405, 1113, 1209, 1281 |
| BseNI | ACTGG | 1 cut(s) | 901 |
| BseRI | GAGGAG | 1 cut(s) | 1108 |
| BseSI | GKGCMC | 1 cut(s) | 1066 |
| BseXI | GCAGC | 2 cut(s) | 675, 1328 |
| BsgI | GTGCAG | 1 cut(s) | 1335 |
| BshFI | GGCC | 3 cut(s) | 703, 1160, 1328 |
| BshNI | GGYRCC | 1 cut(s) | 298 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1066, 1100 |
| BsiHKCI | CYCGRG | 1 cut(s) | 811 |
| BsiSI | CCGG | 2 cut(s) | 145, 1162 |
| BslFI | GGGAC | 3 cut(s) | 43, 242, 847 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 374, 988, 1167, 1306 |
| BsmAI | GTCTC | 1 cut(s) | 814 |
| BsmFI | GGGAC | 3 cut(s) | 43, 242, 847 |
| BsnI | GGCC | 3 cut(s) | 703, 1160, 1328 |
| Bso31I | GGTCTC | 1 cut(s) | 814 |
| BsoBI | CYCGRG | 1 cut(s) | 811 |
| Bsp119I | TTCGAA | 3 cut(s) | 67, 319, 481 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1066, 1100 |
| Bsp143I | GATC | 1 cut(s) | 499 |
| Bsp19I | CCATGG | 1 cut(s) | 191 |
| BspACI | CCGC | 3 cut(s) | 686, 878, 1165 |
| BspANI | GGCC | 3 cut(s) | 703, 1160, 1328 |
| BspCNI | CTCAG | 6 cut(s) | 222, 352, 406, 1112, 1210, 1282 |
| BspLI | GGNNCC | 3 cut(s) | 189, 300, 702 |
| BspT104I | TTCGAA | 3 cut(s) | 67, 319, 481 |
| BspT107I | GGYRCC | 1 cut(s) | 298 |
| BspTNI | GGTCTC | 1 cut(s) | 814 |
| BsrI | ACTGG | 1 cut(s) | 901 |
| BssECI | CCNNGG | 3 cut(s) | 191, 368, 982 |
| BssMI | GATC | 1 cut(s) | 499 |
| BssSI | CACGAG | 1 cut(s) | 1334 |
| BssT1I | CCWWGG | 1 cut(s) | 191 |
| Bst2BI | CACGAG | 1 cut(s) | 1334 |
| Bst2UI | CCWGG | 2 cut(s) | 369, 983 |
| Bst4CI | ACNGT | 5 cut(s) | 247, 303, 355, 459, 552 |
| Bst6I | CTCTTC | 3 cut(s) | 140, 231, 1124 |
| BstBI | TTCGAA | 3 cut(s) | 67, 319, 481 |
| BstC8I | GCNNGC | 1 cut(s) | 1326 |
| BstDEI | CTNAG | 7 cut(s) | 230, 344, 360, 414, 1099, 1218, 1290 |
| BstDSI | CCRYGG | 1 cut(s) | 191 |
| BstF5I | GGATG | 6 cut(s) | 331, 445, 502, 665, 742, 1204 |
| BstKTI | GATC | 1 cut(s) | 502 |
| BstMAI | GTCTC | 1 cut(s) | 814 |
| BstMBI | GATC | 1 cut(s) | 499 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1325 |
| BstNI | CCWGG | 2 cut(s) | 369, 983 |
| BstNSI | RCATGY | 1 cut(s) | 947 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 35 |
| BstSCI | CCNGG | 4 cut(s) | 143, 367, 981, 1160 |
| BstSLI | GKGCMC | 1 cut(s) | 1066 |
| BstV1I | GCAGC | 2 cut(s) | 675, 1328 |
| BsuI | GTATCC | 1 cut(s) | 1307 |
| BsuRI | GGCC | 3 cut(s) | 703, 1160, 1328 |
| BtgI | CCRYGG | 1 cut(s) | 191 |
| BtsCI | GGATG | 6 cut(s) | 331, 445, 502, 665, 742, 1204 |
| Cac8I | GCNNGC | 1 cut(s) | 1326 |
| CaiI | CAGNNNCTG | 1 cut(s) | 251 |
| Cfr13I | GGNCC | 4 cut(s) | 37, 701, 1159, 1327 |
| CseI | GACGC | 1 cut(s) | 895 |
| Csp6I | GTAC | 3 cut(s) | 299, 351, 570 |
| CviAII | CATG | 7 cut(s) | 43, 192, 293, 542, 729, 944, 1249 |
| CviQI | GTAC | 3 cut(s) | 299, 351, 570 |
| DdeI | CTNAG | 7 cut(s) | 230, 344, 360, 414, 1099, 1218, 1290 |
| DpnI | GATC | 1 cut(s) | 501 |
| DpnII | GATC | 1 cut(s) | 499 |
| Eam1104I | CTCTTC | 3 cut(s) | 140, 231, 1124 |
| EarI | CTCTTC | 3 cut(s) | 140, 231, 1124 |
| Ecl136II | GAGCTC | 1 cut(s) | 1098 |
| Eco130I | CCWWGG | 1 cut(s) | 191 |
| Eco24I | GRGCYC | 1 cut(s) | 1100 |
| Eco31I | GGTCTC | 1 cut(s) | 814 |
| Eco47I | GGWCC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 1 cut(s) | 1098 |
| Eco57I | CTGAAG | 2 cut(s) | 549, 1323 |
| Eco88I | CYCGRG | 1 cut(s) | 811 |
| EcoICRI | GAGCTC | 1 cut(s) | 1098 |
| EcoRII | CCWGG | 2 cut(s) | 367, 981 |
| EcoT14I | CCWWGG | 1 cut(s) | 191 |
| EcoT22I | ATGCAT | 2 cut(s) | 543, 945 |
| EcoT38I | GRGCYC | 1 cut(s) | 1100 |
| ErhI | CCWWGG | 1 cut(s) | 191 |
| FaeI | CATG | 7 cut(s) | 46, 195, 296, 545, 732, 947, 1252 |
| FaqI | GGGAC | 3 cut(s) | 43, 242, 847 |
| FatI | CATG | 7 cut(s) | 42, 191, 292, 541, 728, 943, 1248 |
| FauNDI | CATATG | 1 cut(s) | 153 |
| FblI | GTMKAC | 1 cut(s) | 893 |
| Fnu4HI | GCNGC | 4 cut(s) | 686, 689, 879, 1317 |
| FokI | GGATG | 6 cut(s) | 338, 432, 509, 672, 749, 1211 |
| FriOI | GRGCYC | 1 cut(s) | 1100 |
| Fsp4HI | GCNGC | 4 cut(s) | 686, 689, 879, 1317 |
| FspBI | CTAG | 7 cut(s) | 57, 140, 453, 473, 609, 837, 933 |
| GluI | GCNGC | 4 cut(s) | 686, 689, 879, 1317 |
| HaeIII | GGCC | 3 cut(s) | 703, 1160, 1328 |
| HapII | CCGG | 2 cut(s) | 145, 1162 |
| HgaI | GACGC | 1 cut(s) | 895 |
| Hin1II | CATG | 7 cut(s) | 46, 195, 296, 545, 732, 947, 1252 |
| HinfI | GANTC | 6 cut(s) | 21, 69, 478, 614, 860, 1028 |
| HpaII | CCGG | 2 cut(s) | 145, 1162 |
| HphI | GGTGA | 5 cut(s) | 596, 631, 776, 1165, 1291 |
| Hpy166II | GTNNAC | 4 cut(s) | 391, 767, 894, 1064 |
| Hpy188I | TCNGA | 6 cut(s) | 74, 231, 557, 939, 1102, 1291 |
| Hpy188III | TCNNGA | 2 cut(s) | 425, 851 |
| Hpy8I | GTNNAC | 4 cut(s) | 391, 767, 894, 1064 |
| HpyAV | CCTTC | 8 cut(s) | 484, 585, 638, 995, 1014, 1097, 1144, 1270 |
| HpyCH4III | ACNGT | 5 cut(s) | 247, 303, 355, 459, 552 |
| HpyCH4IV | ACGT | 2 cut(s) | 272, 577 |
| HpyCH4V | TGCA | 9 cut(s) | 286, 292, 541, 732, 740, 788, 943, 1064, 1316 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1325 |
| HpyF3I | CTNAG | 7 cut(s) | 230, 344, 360, 414, 1099, 1218, 1290 |
| HpySE526I | ACGT | 2 cut(s) | 272, 577 |
| Hsp92II | CATG | 7 cut(s) | 46, 195, 296, 545, 732, 947, 1252 |
| KpnI | GGTACC | 1 cut(s) | 302 |
| Kzo9I | GATC | 1 cut(s) | 499 |
| LmnI | GCTCC | 4 cut(s) | 46, 97, 187, 1095 |
| Lsp1109I | GCAGC | 2 cut(s) | 675, 1328 |
| LweI | GCATC | 4 cut(s) | 454, 727, 728, 930 |
| MaeI | CTAG | 7 cut(s) | 57, 140, 453, 473, 609, 837, 933 |
| MaeII | ACGT | 2 cut(s) | 272, 577 |
| MaeIII | GTNAC | 5 cut(s) | 247, 303, 328, 752, 1207 |
| MalI | GATC | 1 cut(s) | 501 |
| MboI | GATC | 1 cut(s) | 499 |
| MboII | GAAGA | 6 cut(s) | 127, 248, 714, 1037, 1141, 1214 |
| MfeI | CAATTG | 1 cut(s) | 789 |
| MhlI | GDGCHC | 2 cut(s) | 1066, 1100 |
| MluCI | AATT | 4 cut(s) | 438, 789, 912, 1264 |
| MlyI | GAGTC | 1 cut(s) | 869 |
| MmeI | TCCRAC | 3 cut(s) | 355, 473, 1218 |
| Mph1103I | ATGCAT | 2 cut(s) | 543, 945 |
| MroXI | GAANNNNTTC | 1 cut(s) | 551 |
| MseI | TTAA | 4 cut(s) | 521, 869, 948, 965 |
| MslI | CAYNNNNRTG | 1 cut(s) | 759 |
| MspA1I | CMGCKG | 1 cut(s) | 688 |
| MspI | CCGG | 2 cut(s) | 145, 1162 |
| MspR9I | CCNGG | 4 cut(s) | 145, 369, 983, 1162 |
| MunI | CAATTG | 1 cut(s) | 789 |
| MvaI | CCWGG | 2 cut(s) | 369, 983 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1325 |
| NciI | CCSGG | 2 cut(s) | 145, 1162 |
| NcoI | CCATGG | 1 cut(s) | 191 |
| NdeI | CATATG | 1 cut(s) | 153 |
| NdeII | GATC | 1 cut(s) | 499 |
| NlaIII | CATG | 7 cut(s) | 46, 195, 296, 545, 732, 947, 1252 |
| NlaIV | GGNNCC | 3 cut(s) | 189, 300, 702 |
| NmuCI | GTSAC | 2 cut(s) | 752, 1207 |
| NsiI | ATGCAT | 2 cut(s) | 543, 945 |
| NspI | RCATGY | 1 cut(s) | 947 |
| NspV | TTCGAA | 3 cut(s) | 67, 319, 481 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 508 |
| PdmI | GAANNNNTTC | 1 cut(s) | 551 |
| PfeI | GAWTC | 5 cut(s) | 21, 69, 478, 614, 1028 |
| PflFI | GACNNNGTC | 1 cut(s) | 889 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 988 |
| PkrI | GCNGC | 4 cut(s) | 687, 690, 880, 1318 |
| PleI | GAGTC | 1 cut(s) | 868 |
| PpsI | GAGTC | 1 cut(s) | 868 |
| PshAI | GACNNNNGTC | 1 cut(s) | 35 |
| PsiI | TTATAA | 1 cut(s) | 113 |
| Psp124BI | GAGCTC | 1 cut(s) | 1100 |
| Psp6I | CCWGG | 2 cut(s) | 367, 981 |
| PspGI | CCWGG | 2 cut(s) | 367, 981 |
| PspN4I | GGNNCC | 3 cut(s) | 189, 300, 702 |
| PspPI | GGNCC | 4 cut(s) | 37, 701, 1159, 1327 |
| PstNI | CAGNNNCTG | 1 cut(s) | 251 |
| PsyI | GACNNNGTC | 1 cut(s) | 889 |
| RsaI | GTAC | 3 cut(s) | 300, 352, 571 |
| RsaNI | GTAC | 3 cut(s) | 299, 351, 570 |
| RseI | CAYNNNNRTG | 1 cut(s) | 759 |
| SacI | GAGCTC | 1 cut(s) | 1100 |
| SaqAI | TTAA | 4 cut(s) | 521, 869, 948, 965 |
| SatI | GCNGC | 4 cut(s) | 686, 689, 879, 1317 |
| Sau3AI | GATC | 1 cut(s) | 499 |
| Sau96I | GGNCC | 4 cut(s) | 37, 701, 1159, 1327 |
| SchI | GAGTC | 1 cut(s) | 869 |
| ScrFI | CCNGG | 4 cut(s) | 145, 369, 983, 1162 |
| SduI | GDGCHC | 2 cut(s) | 1066, 1100 |
| SfaNI | GCATC | 4 cut(s) | 454, 727, 728, 930 |
| SfuI | TTCGAA | 3 cut(s) | 67, 319, 481 |
| SinI | GGWCC | 1 cut(s) | 37 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 759 |
| Sse9I | AATT | 4 cut(s) | 438, 789, 912, 1264 |
| SsiI | CCGC | 3 cut(s) | 686, 878, 1165 |
| SspMI | CTAG | 7 cut(s) | 57, 140, 453, 473, 609, 837, 933 |
| SstI | GAGCTC | 1 cut(s) | 1100 |
| StyD4I | CCNGG | 4 cut(s) | 143, 367, 981, 1160 |
| StyI | CCWWGG | 1 cut(s) | 191 |
| TaaI | ACNGT | 5 cut(s) | 247, 303, 355, 459, 552 |
| TaiI | ACGT | 2 cut(s) | 275, 580 |
| TaqI | TCGA | 6 cut(s) | 67, 319, 481, 534, 758, 1138 |
| TasI | AATT | 4 cut(s) | 438, 789, 912, 1264 |
| TatI | WGTACW | 1 cut(s) | 569 |
| TauI | GCSGC | 2 cut(s) | 688, 881 |
| TfiI | GAWTC | 5 cut(s) | 21, 69, 478, 614, 1028 |
| Tru1I | TTAA | 4 cut(s) | 521, 869, 948, 965 |
| Tru9I | TTAA | 4 cut(s) | 521, 869, 948, 965 |
| TseFI | GTSAC | 2 cut(s) | 752, 1207 |
| TseI | GCWGC | 2 cut(s) | 688, 1316 |
| Tsp45I | GTSAC | 2 cut(s) | 752, 1207 |
| TspDTI | ATGAA | 5 cut(s) | 17, 140, 417, 983, 1215 |
| Tth111I | GACNNNGTC | 1 cut(s) | 889 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 988 |
| VneI | GTGCAC | 1 cut(s) | 1062 |
| VpaK11BI | GGWCC | 1 cut(s) | 37 |
| XapI | RAATTY | 1 cut(s) | 1264 |
| XceI | RCATGY | 1 cut(s) | 947 |
| XmiI | GTMKAC | 1 cut(s) | 893 |
| XmnI | GAANNNNTTC | 1 cut(s) | 551 |
| XspI | CTAG | 7 cut(s) | 57, 140, 453, 473, 609, 837, 933 |
| Zsp2I | ATGCAT | 2 cut(s) | 543, 945 |