ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 621 |
| Acc36I | ACCTGC | 1 cut(s) | 621 |
| AccB1I | GGYRCC | 1 cut(s) | 30 |
| AccI | GTMKAC | 1 cut(s) | 962 |
| AccII | CGCG | 1 cut(s) | 1212 |
| AciI | CCGC | 2 cut(s) | 783, 1212 |
| AclWI | GGATC | 6 cut(s) | 74, 335, 527, 654, 657, 1107 |
| AcuI | CTGAAG | 1 cut(s) | 542 |
| AfaI | GTAC | 1 cut(s) | 735 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1051 |
| AflIII | ACRYGT | 1 cut(s) | 736 |
| AgsI | TTSAA | 6 cut(s) | 160, 247, 565, 946, 1004, 1256 |
| AjnI | CCWGG | 1 cut(s) | 1067 |
| AluBI | AGCT | 7 cut(s) | 222, 498, 592, 1124, 1172, 1348, 1369 |
| AluI | AGCT | 7 cut(s) | 222, 498, 592, 1124, 1172, 1348, 1369 |
| Alw21I | GWGCWC | 4 cut(s) | 224, 612, 1017, 1329 |
| Alw26I | GTCTC | 1 cut(s) | 565 |
| Alw44I | GTGCAC | 1 cut(s) | 1325 |
| AlwI | GGATC | 6 cut(s) | 74, 335, 527, 654, 657, 1107 |
| Ama87I | CYCGRG | 1 cut(s) | 568 |
| AoxI | GGCC | 4 cut(s) | 670, 1042, 1055, 1396 |
| ApaLI | GTGCAC | 1 cut(s) | 1325 |
| ApeKI | GCWGC | 1 cut(s) | 1124 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 999 |
| AspLEI | GCGC | 2 cut(s) | 406, 1212 |
| AspS9I | GGNCC | 1 cut(s) | 1055 |
| AsuHPI | GGTGA | 3 cut(s) | 29, 526, 872 |
| AsuII | TTCGAA | 1 cut(s) | 600 |
| AvaI | CYCGRG | 1 cut(s) | 568 |
| BaeGI | GKGCMC | 1 cut(s) | 1329 |
| BanI | GGYRCC | 1 cut(s) | 30 |
| BanII | GRGCYC | 2 cut(s) | 224, 709 |
| BbsI | GAAGAC | 2 cut(s) | 229, 548 |
| Bbv12I | GWGCWC | 4 cut(s) | 224, 612, 1017, 1329 |
| BbvI | GCAGC | 1 cut(s) | 1111 |
| BccI | CCATC | 6 cut(s) | 248, 323, 479, 752, 851, 1001 |
| BciT130I | CCWGG | 1 cut(s) | 1069 |
| BclI | TGATCA | 1 cut(s) | 1177 |
| BcoDI | GTCTC | 1 cut(s) | 565 |
| BfaI | CTAG | 5 cut(s) | 132, 893, 1173, 1337, 1374 |
| BfuAI | ACCTGC | 1 cut(s) | 621 |
| BisI | GCNGC | 1 cut(s) | 1125 |
| BlsI | GCNGC | 1 cut(s) | 1126 |
| Bme1390I | CCNGG | 1 cut(s) | 1069 |
| BmeT110I | CYCGRG | 1 cut(s) | 568 |
| BmgT120I | GGNCC | 1 cut(s) | 1055 |
| BmiI | GGNNCC | 3 cut(s) | 32, 469, 1056 |
| BmrFI | CCNGG | 1 cut(s) | 1069 |
| BpiI | GAAGAC | 2 cut(s) | 229, 548 |
| BpmI | CTGGAG | 3 cut(s) | 501, 990, 1090 |
| Bpu14I | TTCGAA | 1 cut(s) | 600 |
| BpuEI | CTTGAG | 1 cut(s) | 731 |
| BsaAI | YACGTR | 1 cut(s) | 737 |
| BsaBI | GATNNNNATC | 1 cut(s) | 258 |
| BsaJI | CCNNGG | 4 cut(s) | 287, 344, 1018, 1045 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1063, 1093 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1051 |
| Bse1I | ACTGG | 2 cut(s) | 484, 973 |
| Bse8I | GATNNNNATC | 1 cut(s) | 258 |
| BseBI | CCWGG | 1 cut(s) | 1069 |
| BseDI | CCNNGG | 4 cut(s) | 287, 344, 1018, 1045 |
| BseGI | GGATG | 5 cut(s) | 82, 772, 781, 1025, 1318 |
| BseJI | GATNNNNATC | 1 cut(s) | 258 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1051 |
| BseMII | CTCAG | 2 cut(s) | 90, 530 |
| BseNI | ACTGG | 2 cut(s) | 484, 973 |
| BseRI | GAGGAG | 3 cut(s) | 209, 878, 1379 |
| BseSI | GKGCMC | 1 cut(s) | 1329 |
| BseXI | GCAGC | 1 cut(s) | 1111 |
| Bsh1236I | CGCG | 1 cut(s) | 1212 |
| BshFI | GGCC | 4 cut(s) | 672, 1044, 1057, 1398 |
| BshNI | GGYRCC | 1 cut(s) | 30 |
| BsiHKAI | GWGCWC | 4 cut(s) | 224, 612, 1017, 1329 |
| BsiHKCI | CYCGRG | 1 cut(s) | 568 |
| BslFI | GGGAC | 1 cut(s) | 1248 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1051 |
| BsmAI | GTCTC | 1 cut(s) | 565 |
| BsmFI | GGGAC | 1 cut(s) | 1248 |
| BsmI | GAATGC | 1 cut(s) | 1393 |
| BsnI | GGCC | 4 cut(s) | 672, 1044, 1057, 1398 |
| BsoBI | CYCGRG | 1 cut(s) | 568 |
| Bsp119I | TTCGAA | 1 cut(s) | 600 |
| Bsp1286I | GDGCHC | 5 cut(s) | 224, 612, 709, 1017, 1329 |
| Bsp143I | GATC | 9 cut(s) | 55, 79, 340, 532, 646, 662, 714, 1099, 1177 |
| Bsp19I | CCATGG | 1 cut(s) | 287 |
| BspACI | CCGC | 2 cut(s) | 783, 1212 |
| BspANI | GGCC | 4 cut(s) | 672, 1044, 1057, 1398 |
| BspCNI | CTCAG | 2 cut(s) | 91, 531 |
| BspFNI | CGCG | 1 cut(s) | 1212 |
| BspLI | GGNNCC | 3 cut(s) | 32, 469, 1056 |
| BspMI | ACCTGC | 1 cut(s) | 621 |
| BspPI | GGATC | 6 cut(s) | 74, 335, 527, 654, 657, 1107 |
| BspT104I | TTCGAA | 1 cut(s) | 600 |
| BspT107I | GGYRCC | 1 cut(s) | 30 |
| BsrI | ACTGG | 2 cut(s) | 484, 973 |
| BssECI | CCNNGG | 4 cut(s) | 287, 344, 1018, 1045 |
| BssMI | GATC | 9 cut(s) | 55, 79, 340, 532, 646, 662, 714, 1099, 1177 |
| BssT1I | CCWWGG | 2 cut(s) | 287, 1018 |
| Bst2UI | CCWGG | 1 cut(s) | 1069 |
| Bst4CI | ACNGT | 4 cut(s) | 73, 475, 507, 582 |
| BstBAI | YACGTR | 1 cut(s) | 737 |
| BstBI | TTCGAA | 1 cut(s) | 600 |
| BstC8I | GCNNGC | 4 cut(s) | 312, 551, 590, 1214 |
| BstDEI | CTNAG | 2 cut(s) | 99, 539 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstF5I | GGATG | 5 cut(s) | 82, 772, 781, 1025, 1318 |
| BstFNI | CGCG | 1 cut(s) | 1212 |
| BstHHI | GCGC | 2 cut(s) | 406, 1212 |
| BstKTI | GATC | 9 cut(s) | 58, 82, 343, 535, 649, 665, 717, 1102, 1180 |
| BstMAI | GTCTC | 1 cut(s) | 565 |
| BstMBI | GATC | 9 cut(s) | 55, 79, 340, 532, 646, 662, 714, 1099, 1177 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 403 |
| BstNI | CCWGG | 1 cut(s) | 1069 |
| BstNSI | RCATGY | 1 cut(s) | 553 |
| BstSCI | CCNGG | 1 cut(s) | 1067 |
| BstSLI | GKGCMC | 1 cut(s) | 1329 |
| BstUI | CGCG | 1 cut(s) | 1212 |
| BstV1I | GCAGC | 1 cut(s) | 1111 |
| BstV2I | GAAGAC | 2 cut(s) | 229, 548 |
| BsuRI | GGCC | 4 cut(s) | 672, 1044, 1057, 1398 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtsCI | GGATG | 5 cut(s) | 82, 772, 781, 1025, 1318 |
| BtsIMutI | CAGTG | 2 cut(s) | 78, 471 |
| BveI | ACCTGC | 1 cut(s) | 621 |
| Cac8I | GCNNGC | 4 cut(s) | 312, 551, 590, 1214 |
| CfoI | GCGC | 2 cut(s) | 406, 1212 |
| Cfr13I | GGNCC | 1 cut(s) | 1055 |
| CseI | GACGC | 1 cut(s) | 542 |
| Csp6I | GTAC | 1 cut(s) | 734 |
| CviAII | CATG | 8 cut(s) | 288, 421, 550, 656, 806, 1088, 1148, 1400 |
| CviQI | GTAC | 1 cut(s) | 734 |
| DdeI | CTNAG | 2 cut(s) | 99, 539 |
| DpnI | GATC | 9 cut(s) | 57, 81, 342, 534, 648, 664, 716, 1101, 1179 |
| DpnII | GATC | 9 cut(s) | 55, 79, 340, 532, 646, 662, 714, 1099, 1177 |
| Ecl136II | GAGCTC | 1 cut(s) | 222 |
| Eco130I | CCWWGG | 2 cut(s) | 287, 1018 |
| Eco24I | GRGCYC | 2 cut(s) | 224, 709 |
| Eco53kI | GAGCTC | 1 cut(s) | 222 |
| Eco57I | CTGAAG | 1 cut(s) | 542 |
| Eco88I | CYCGRG | 1 cut(s) | 568 |
| EcoICRI | GAGCTC | 1 cut(s) | 222 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1055 |
| EcoRII | CCWGG | 1 cut(s) | 1067 |
| EcoT14I | CCWWGG | 2 cut(s) | 287, 1018 |
| EcoT38I | GRGCYC | 2 cut(s) | 224, 709 |
| ErhI | CCWWGG | 2 cut(s) | 287, 1018 |
| FaeI | CATG | 8 cut(s) | 291, 424, 553, 659, 809, 1091, 1151, 1403 |
| FaqI | GGGAC | 1 cut(s) | 1248 |
| FatI | CATG | 8 cut(s) | 287, 420, 549, 655, 805, 1087, 1147, 1399 |
| FauI | CCCGC | 2 cut(s) | 776, 1205 |
| FbaI | TGATCA | 1 cut(s) | 1177 |
| FblI | GTMKAC | 1 cut(s) | 962 |
| Fnu4HI | GCNGC | 1 cut(s) | 1125 |
| FokI | GGATG | 5 cut(s) | 89, 779, 788, 1012, 1325 |
| FriOI | GRGCYC | 2 cut(s) | 224, 709 |
| Fsp4HI | GCNGC | 1 cut(s) | 1125 |
| FspBI | CTAG | 5 cut(s) | 132, 893, 1173, 1337, 1374 |
| GlaI | GCGC | 2 cut(s) | 405, 1211 |
| GluI | GCNGC | 1 cut(s) | 1125 |
| GsuI | CTGGAG | 3 cut(s) | 501, 990, 1090 |
| HaeIII | GGCC | 4 cut(s) | 672, 1044, 1057, 1398 |
| HgaI | GACGC | 1 cut(s) | 542 |
| HhaI | GCGC | 2 cut(s) | 406, 1212 |
| Hin1II | CATG | 8 cut(s) | 291, 424, 553, 659, 809, 1091, 1151, 1403 |
| Hin6I | GCGC | 2 cut(s) | 404, 1210 |
| HinP1I | GCGC | 2 cut(s) | 404, 1210 |
| HincII | GTYRAC | 4 cut(s) | 186, 355, 411, 462 |
| HindII | GTYRAC | 4 cut(s) | 186, 355, 411, 462 |
| HindIII | AAGCTT | 1 cut(s) | 1346 |
| HinfI | GANTC | 5 cut(s) | 152, 259, 264, 802, 889 |
| HphI | GGTGA | 3 cut(s) | 29, 526, 872 |
| Hpy166II | GTNNAC | 8 cut(s) | 186, 355, 411, 462, 638, 963, 1065, 1327 |
| Hpy188I | TCNGA | 7 cut(s) | 226, 253, 269, 345, 532, 540, 883 |
| Hpy188III | TCNNGA | 3 cut(s) | 44, 59, 1004 |
| Hpy8I | GTNNAC | 8 cut(s) | 186, 355, 411, 462, 638, 963, 1065, 1327 |
| Hpy99I | CGWCG | 2 cut(s) | 53, 56 |
| HpyAV | CCTTC | 6 cut(s) | 253, 408, 420, 970, 1045, 1250 |
| HpyCH4III | ACNGT | 4 cut(s) | 73, 475, 507, 582 |
| HpyCH4IV | ACGT | 2 cut(s) | 147, 736 |
| HpyCH4V | TGCA | 3 cut(s) | 1087, 1147, 1327 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 403 |
| HpyF3I | CTNAG | 2 cut(s) | 99, 539 |
| HpySE526I | ACGT | 2 cut(s) | 147, 736 |
| Hsp92II | CATG | 8 cut(s) | 291, 424, 553, 659, 809, 1091, 1151, 1403 |
| HspAI | GCGC | 2 cut(s) | 404, 1210 |
| Ksp22I | TGATCA | 1 cut(s) | 1177 |
| Kzo9I | GATC | 9 cut(s) | 55, 79, 340, 532, 646, 662, 714, 1099, 1177 |
| LmnI | GCTCC | 5 cut(s) | 226, 495, 1012, 1169, 1366 |
| LpnPI | CCDG | 9 cut(s) | 29, 44, 296, 465, 626, 943, 954, 1054, 1081 |
| Lsp1109I | GCAGC | 1 cut(s) | 1111 |
| MaeI | CTAG | 5 cut(s) | 132, 893, 1173, 1337, 1374 |
| MaeII | ACGT | 2 cut(s) | 147, 736 |
| MaeIII | GTNAC | 4 cut(s) | 17, 475, 817, 1339 |
| MalI | GATC | 9 cut(s) | 57, 81, 342, 534, 648, 664, 716, 1101, 1179 |
| MboI | GATC | 9 cut(s) | 55, 79, 340, 532, 646, 662, 714, 1099, 1177 |
| MboII | GAAGA | 6 cut(s) | 187, 229, 548, 767, 1048, 1237 |
| MhlI | GDGCHC | 5 cut(s) | 224, 612, 709, 1017, 1329 |
| MluCI | AATT | 4 cut(s) | 301, 432, 901, 1290 |
| MlyI | GAGTC | 1 cut(s) | 258 |
| MmeI | TCCRAC | 2 cut(s) | 1077, 1147 |
| MroXI | GAANNNNTTC | 1 cut(s) | 999 |
| MseI | TTAA | 5 cut(s) | 144, 584, 912, 1269, 1350 |
| MslI | CAYNNNNRTG | 2 cut(s) | 71, 654 |
| MspR9I | CCNGG | 1 cut(s) | 1069 |
| Mva1269I | GAATGC | 1 cut(s) | 1393 |
| MvaI | CCWGG | 1 cut(s) | 1069 |
| MvnI | CGCG | 1 cut(s) | 1212 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 403 |
| NcoI | CCATGG | 1 cut(s) | 287 |
| NdeII | GATC | 9 cut(s) | 55, 79, 340, 532, 646, 662, 714, 1099, 1177 |
| NlaIII | CATG | 8 cut(s) | 291, 424, 553, 659, 809, 1091, 1151, 1403 |
| NlaIV | GGNNCC | 3 cut(s) | 32, 469, 1056 |
| NmeAIII | GCCGAG | 1 cut(s) | 1070 |
| NmuCI | GTSAC | 3 cut(s) | 17, 817, 1339 |
| NspI | RCATGY | 1 cut(s) | 553 |
| NspV | TTCGAA | 1 cut(s) | 600 |
| PaeI | GCATGC | 1 cut(s) | 553 |
| PaqCI | CACCTGC | 1 cut(s) | 621 |
| PctI | GAATGC | 1 cut(s) | 1393 |
| PdmI | GAANNNNTTC | 1 cut(s) | 999 |
| PfeI | GAWTC | 4 cut(s) | 152, 259, 802, 889 |
| PkrI | GCNGC | 1 cut(s) | 1126 |
| PleI | GAGTC | 1 cut(s) | 258 |
| PpsI | GAGTC | 1 cut(s) | 258 |
| Ppu21I | YACGTR | 1 cut(s) | 737 |
| Psp124BI | GAGCTC | 1 cut(s) | 224 |
| Psp6I | CCWGG | 1 cut(s) | 1067 |
| PspGI | CCWGG | 1 cut(s) | 1067 |
| PspN4I | GGNNCC | 3 cut(s) | 32, 469, 1056 |
| PspPI | GGNCC | 1 cut(s) | 1055 |
| RsaI | GTAC | 1 cut(s) | 735 |
| RsaNI | GTAC | 1 cut(s) | 734 |
| RseI | CAYNNNNRTG | 2 cut(s) | 71, 654 |
| SacI | GAGCTC | 1 cut(s) | 224 |
| SaqAI | TTAA | 5 cut(s) | 144, 584, 912, 1269, 1350 |
| SatI | GCNGC | 1 cut(s) | 1125 |
| Sau3AI | GATC | 9 cut(s) | 55, 79, 340, 532, 646, 662, 714, 1099, 1177 |
| Sau96I | GGNCC | 1 cut(s) | 1055 |
| SchI | GAGTC | 1 cut(s) | 258 |
| ScrFI | CCNGG | 1 cut(s) | 1069 |
| SduI | GDGCHC | 5 cut(s) | 224, 612, 709, 1017, 1329 |
| SfuI | TTCGAA | 1 cut(s) | 600 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 71, 654 |
| SmlI | CTYRAG | 1 cut(s) | 710 |
| SmoI | CTYRAG | 1 cut(s) | 710 |
| SphI | GCATGC | 1 cut(s) | 553 |
| Sse9I | AATT | 4 cut(s) | 301, 432, 901, 1290 |
| SsiI | CCGC | 2 cut(s) | 783, 1212 |
| SspI | AATATT | 2 cut(s) | 142, 1000 |
| SspMI | CTAG | 5 cut(s) | 132, 893, 1173, 1337, 1374 |
| SstI | GAGCTC | 1 cut(s) | 224 |
| StyD4I | CCNGG | 1 cut(s) | 1067 |
| StyI | CCWWGG | 2 cut(s) | 287, 1018 |
| TaaI | ACNGT | 4 cut(s) | 73, 475, 507, 582 |
| TaiI | ACGT | 2 cut(s) | 150, 739 |
| TaqI | TCGA | 4 cut(s) | 262, 339, 600, 1102 |
| TasI | AATT | 4 cut(s) | 301, 432, 901, 1290 |
| TfiI | GAWTC | 4 cut(s) | 152, 259, 802, 889 |
| Tru1I | TTAA | 5 cut(s) | 144, 584, 912, 1269, 1350 |
| Tru9I | TTAA | 5 cut(s) | 144, 584, 912, 1269, 1350 |
| TscAI | CASTG | 2 cut(s) | 78, 478 |
| TseFI | GTSAC | 3 cut(s) | 17, 817, 1339 |
| TseI | GCWGC | 1 cut(s) | 1124 |
| Tsp45I | GTSAC | 3 cut(s) | 17, 817, 1339 |
| TspDTI | ATGAA | 4 cut(s) | 792, 1014, 1164, 1329 |
| TspGWI | ACGGA | 1 cut(s) | 178 |
| TspRI | CASTG | 2 cut(s) | 78, 478 |
| VneI | GTGCAC | 1 cut(s) | 1325 |
| XceI | RCATGY | 1 cut(s) | 553 |
| XmiI | GTMKAC | 1 cut(s) | 962 |
| XmnI | GAANNNNTTC | 1 cut(s) | 999 |
| XspI | CTAG | 5 cut(s) | 132, 893, 1173, 1337, 1374 |