ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 456 |
| AccIII | TCCGGA | 1 cut(s) | 565 |
| AciI | CCGC | 6 cut(s) | 83, 189, 630, 947, 1738, 2367 |
| AclWI | GGATC | 5 cut(s) | 234, 585, 2181, 2249, 2361 |
| AcoI | YGGCCR | 4 cut(s) | 84, 1887, 2263, 2368 |
| AcsI | RAATTY | 7 cut(s) | 361, 569, 590, 1286, 1718, 2063, 2458 |
| AfaI | GTAC | 4 cut(s) | 104, 412, 2076, 2249 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 572, 764, 2322 |
| AflIII | ACRYGT | 1 cut(s) | 2250 |
| AhlI | ACTAGT | 1 cut(s) | 1514 |
| AjiI | CACGTC | 3 cut(s) | 179, 217, 736 |
| AjnI | CCWGG | 1 cut(s) | 2147 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1418, 1450 |
| AleI | CACNNNNGTG | 1 cut(s) | 181 |
| AluBI | AGCT | 6 cut(s) | 536, 827, 1120, 1364, 1795, 2479 |
| AluI | AGCT | 6 cut(s) | 536, 827, 1120, 1364, 1795, 2479 |
| Alw21I | GWGCWC | 1 cut(s) | 34 |
| Alw26I | GTCTC | 8 cut(s) | 309, 538, 900, 1433, 1516, 1642, 2138, 2289 |
| AlwI | GGATC | 5 cut(s) | 234, 585, 2181, 2249, 2361 |
| Ama87I | CYCGRG | 1 cut(s) | 962 |
| Aor13HI | TCCGGA | 1 cut(s) | 565 |
| AoxI | GGCC | 8 cut(s) | 84, 754, 1627, 1842, 1887, 1944, 2263, 2368 |
| ApoI | RAATTY | 7 cut(s) | 361, 569, 590, 1286, 1718, 2063, 2458 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1295, 1327 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2221 |
| AspLEI | GCGC | 2 cut(s) | 519, 1341 |
| AspS9I | GGNCC | 6 cut(s) | 755, 911, 1571, 1628, 1849, 1944 |
| AsuC2I | CCSGG | 1 cut(s) | 1631 |
| AsuHPI | GGTGA | 8 cut(s) | 475, 812, 952, 1091, 1115, 1415, 1469, 1510 |
| AvaI | CYCGRG | 1 cut(s) | 962 |
| AvaII | GGWCC | 3 cut(s) | 911, 1571, 1849 |
| AxyI | CCTNAGG | 1 cut(s) | 719 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 720, 753 |
| BalI | TGGCCA | 1 cut(s) | 1889 |
| BanII | GRGCYC | 1 cut(s) | 1393 |
| BauI | CACGAG | 1 cut(s) | 57 |
| Bbv12I | GWGCWC | 1 cut(s) | 34 |
| BccI | CCATC | 9 cut(s) | 109, 156, 797, 1016, 1054, 1088, 1475, 1562, 1985 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 131, 165 |
| BciT130I | CCWGG | 1 cut(s) | 2149 |
| BclI | TGATCA | 1 cut(s) | 1105 |
| BcnI | CCSGG | 1 cut(s) | 1631 |
| BcoDI | GTCTC | 8 cut(s) | 309, 538, 900, 1433, 1516, 1642, 2138, 2289 |
| BcuI | ACTAGT | 1 cut(s) | 1514 |
| BfaI | CTAG | 4 cut(s) | 651, 759, 1515, 2189 |
| BfmI | CTRYAG | 3 cut(s) | 790, 843, 899 |
| BglII | AGATCT | 2 cut(s) | 1640, 2503 |
| BisI | GCNGC | 2 cut(s) | 84, 2368 |
| BlsI | GCNGC | 2 cut(s) | 85, 2369 |
| Bme1390I | CCNGG | 2 cut(s) | 1631, 2149 |
| Bme18I | GGWCC | 3 cut(s) | 911, 1571, 1849 |
| BmeT110I | CYCGRG | 1 cut(s) | 962 |
| BmgBI | CACGTC | 3 cut(s) | 179, 217, 736 |
| BmgT120I | GGNCC | 6 cut(s) | 755, 911, 1571, 1628, 1849, 1944 |
| BmiI | GGNNCC | 3 cut(s) | 321, 912, 1115 |
| BmrFI | CCNGG | 2 cut(s) | 1631, 2149 |
| BmrI | ACTGGG | 1 cut(s) | 1310 |
| BmsI | GCATC | 4 cut(s) | 652, 772, 1738, 2389 |
| BmuI | ACTGGG | 1 cut(s) | 1310 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1854 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2294, 2326 |
| BpmI | CTGGAG | 1 cut(s) | 1100 |
| Bpu10I | CCTNAGC | 1 cut(s) | 532 |
| BpuMI | CCSGG | 1 cut(s) | 1631 |
| Bsa29I | ATCGAT | 1 cut(s) | 2421 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2438 |
| BsaI | GGTCTC | 2 cut(s) | 2138, 2289 |
| BsaJI | CCNNGG | 6 cut(s) | 287, 398, 1574, 1674, 1845, 1947 |
| BsaWI | WCCGGW | 4 cut(s) | 415, 565, 610, 937 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 38, 68, 980, 1010, 1943, 1973 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 572, 764, 2322 |
| Bse118I | RCCGGY | 1 cut(s) | 2315 |
| Bse1I | ACTGG | 3 cut(s) | 588, 1316, 1630 |
| Bse21I | CCTNAGG | 1 cut(s) | 719 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2438 |
| BseAI | TCCGGA | 1 cut(s) | 565 |
| BseBI | CCWGG | 1 cut(s) | 2149 |
| BseCI | ATCGAT | 1 cut(s) | 2421 |
| BseDI | CCNNGG | 6 cut(s) | 287, 398, 1574, 1674, 1845, 1947 |
| BseGI | GGATG | 7 cut(s) | 262, 643, 787, 1099, 1228, 1450, 1486 |
| BseJI | GATNNNNATC | 1 cut(s) | 2438 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 572, 764, 2322 |
| BseMII | CTCAG | 3 cut(s) | 533, 1658, 2025 |
| BseNI | ACTGG | 3 cut(s) | 588, 1316, 1630 |
| BseRI | GAGGAG | 7 cut(s) | 20, 1001, 1070, 1444, 1967, 1970, 2307 |
| BseYI | CCCAGC | 1 cut(s) | 1556 |
| BsgI | GTGCAG | 1 cut(s) | 1513 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2421 |
| BshFI | GGCC | 8 cut(s) | 86, 756, 1629, 1844, 1889, 1946, 2265, 2370 |
| BshVI | ATCGAT | 1 cut(s) | 2421 |
| BsiEI | CGRYCG | 1 cut(s) | 2421 |
| BsiHKAI | GWGCWC | 1 cut(s) | 34 |
| BsiHKCI | CYCGRG | 1 cut(s) | 962 |
| BsiSI | CCGG | 7 cut(s) | 416, 566, 611, 938, 1631, 2262, 2316 |
| BslFI | GGGAC | 3 cut(s) | 305, 380, 1297 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 572, 764, 2322 |
| BsmAI | GTCTC | 8 cut(s) | 309, 538, 900, 1433, 1516, 1642, 2138, 2289 |
| BsmBI | CGTCTC | 2 cut(s) | 538, 1433 |
| BsmFI | GGGAC | 3 cut(s) | 305, 380, 1297 |
| BsnI | GGCC | 8 cut(s) | 86, 756, 1629, 1844, 1889, 1946, 2265, 2370 |
| Bso31I | GGTCTC | 2 cut(s) | 2138, 2289 |
| BsoBI | CYCGRG | 1 cut(s) | 962 |
| Bsp1286I | GDGCHC | 2 cut(s) | 34, 1393 |
| Bsp13I | TCCGGA | 1 cut(s) | 565 |
| Bsp1407I | TGTACA | 2 cut(s) | 410, 2247 |
| Bsp19I | CCATGG | 2 cut(s) | 287, 398 |
| BspACI | CCGC | 6 cut(s) | 83, 189, 630, 947, 1738, 2367 |
| BspANI | GGCC | 8 cut(s) | 86, 756, 1629, 1844, 1889, 1946, 2265, 2370 |
| BspCNI | CTCAG | 3 cut(s) | 534, 1657, 2026 |
| BspDI | ATCGAT | 1 cut(s) | 2421 |
| BspEI | TCCGGA | 1 cut(s) | 565 |
| BspLI | GGNNCC | 3 cut(s) | 321, 912, 1115 |
| BspMAI | CTGCAG | 1 cut(s) | 847 |
| BspPI | GGATC | 5 cut(s) | 234, 585, 2181, 2249, 2361 |
| BspTNI | GGTCTC | 2 cut(s) | 2138, 2289 |
| BsrFI | RCCGGY | 1 cut(s) | 2315 |
| BsrGI | TGTACA | 2 cut(s) | 410, 2247 |
| BsrI | ACTGG | 3 cut(s) | 588, 1316, 1630 |
| BssAI | RCCGGY | 1 cut(s) | 2315 |
| BssECI | CCNNGG | 6 cut(s) | 287, 398, 1574, 1674, 1845, 1947 |
| BssSI | CACGAG | 1 cut(s) | 57 |
| BssT1I | CCWWGG | 5 cut(s) | 287, 398, 1574, 1674, 1947 |
| Bst2BI | CACGAG | 1 cut(s) | 57 |
| Bst2UI | CCWGG | 1 cut(s) | 2149 |
| Bst4CI | ACNGT | 4 cut(s) | 410, 928, 2003, 2129 |
| Bst6I | CTCTTC | 5 cut(s) | 262, 1322, 1421, 2284, 2286 |
| BstAUI | TGTACA | 2 cut(s) | 410, 2247 |
| BstC8I | GCNNGC | 2 cut(s) | 1671, 2481 |
| BstDSI | CCRYGG | 2 cut(s) | 287, 398 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 762 |
| BstF5I | GGATG | 7 cut(s) | 262, 643, 787, 1099, 1228, 1450, 1486 |
| BstHHI | GCGC | 2 cut(s) | 519, 1341 |
| BstMAI | GTCTC | 8 cut(s) | 309, 538, 900, 1433, 1516, 1642, 2138, 2289 |
| BstMCI | CGRYCG | 1 cut(s) | 2421 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 953, 2364 |
| BstNI | CCWGG | 1 cut(s) | 2149 |
| BstNSI | RCATGY | 2 cut(s) | 1673, 2254 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1854 |
| BstSCI | CCNGG | 2 cut(s) | 1629, 2147 |
| BstSFI | CTRYAG | 3 cut(s) | 790, 843, 899 |
| BstX2I | RGATCY | 4 cut(s) | 1640, 2173, 2241, 2503 |
| BstYI | RGATCY | 4 cut(s) | 1640, 2173, 2241, 2503 |
| Bsu15I | ATCGAT | 1 cut(s) | 2421 |
| Bsu36I | CCTNAGG | 1 cut(s) | 719 |
| BsuRI | GGCC | 8 cut(s) | 86, 756, 1629, 1844, 1889, 1946, 2265, 2370 |
| BsuTUI | ATCGAT | 1 cut(s) | 2421 |
| BtgI | CCRYGG | 2 cut(s) | 287, 398 |
| BtgZI | GCGATG | 3 cut(s) | 128, 134, 1761 |
| BtrI | CACGTC | 3 cut(s) | 179, 217, 736 |
| BtsCI | GGATG | 7 cut(s) | 262, 643, 787, 1099, 1228, 1450, 1486 |
| BtsI | GCAGTG | 1 cut(s) | 814 |
| BtsIMutI | CAGTG | 4 cut(s) | 99, 814, 924, 2008 |
| Cac8I | GCNNGC | 2 cut(s) | 1671, 2481 |
| CfoI | GCGC | 2 cut(s) | 519, 1341 |
| Cfr10I | RCCGGY | 1 cut(s) | 2315 |
| Cfr13I | GGNCC | 6 cut(s) | 755, 911, 1571, 1628, 1849, 1944 |
| ClaI | ATCGAT | 1 cut(s) | 2421 |
| CseI | GACGC | 2 cut(s) | 555, 1166 |
| Csp6I | GTAC | 4 cut(s) | 103, 411, 2075, 2248 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2219, 2254 |
| CviQI | GTAC | 4 cut(s) | 103, 411, 2075, 2248 |
| EaeI | YGGCCR | 4 cut(s) | 84, 1887, 2263, 2368 |
| Eam1104I | CTCTTC | 5 cut(s) | 262, 1322, 1421, 2284, 2286 |
| EarI | CTCTTC | 5 cut(s) | 262, 1322, 1421, 2284, 2286 |
| EciI | GGCGGA | 1 cut(s) | 204 |
| Eco130I | CCWWGG | 5 cut(s) | 287, 398, 1574, 1674, 1947 |
| Eco24I | GRGCYC | 1 cut(s) | 1393 |
| Eco31I | GGTCTC | 2 cut(s) | 2138, 2289 |
| Eco32I | GATATC | 1 cut(s) | 433 |
| Eco47I | GGWCC | 3 cut(s) | 911, 1571, 1849 |
| Eco81I | CCTNAGG | 1 cut(s) | 719 |
| Eco88I | CYCGRG | 1 cut(s) | 962 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 762 |
| EcoRI | GAATTC | 2 cut(s) | 361, 1286 |
| EcoRII | CCWGG | 1 cut(s) | 2147 |
| EcoRV | GATATC | 1 cut(s) | 433 |
| EcoT14I | CCWWGG | 5 cut(s) | 287, 398, 1574, 1674, 1947 |
| EcoT38I | GRGCYC | 1 cut(s) | 1393 |
| ErhI | CCWWGG | 5 cut(s) | 287, 398, 1574, 1674, 1947 |
| Esp3I | CGTCTC | 2 cut(s) | 538, 1433 |
| FaqI | GGGAC | 3 cut(s) | 305, 380, 1297 |
| FauI | CCCGC | 2 cut(s) | 623, 1731 |
| FauNDI | CATATG | 1 cut(s) | 388 |
| FbaI | TGATCA | 1 cut(s) | 1105 |
| Fnu4HI | GCNGC | 2 cut(s) | 84, 2368 |
| FokI | GGATG | 7 cut(s) | 269, 630, 794, 1106, 1215, 1457, 1493 |
| FriOI | GRGCYC | 1 cut(s) | 1393 |
| Fsp4HI | GCNGC | 2 cut(s) | 84, 2368 |
| FspBI | CTAG | 4 cut(s) | 651, 759, 1515, 2189 |
| GlaI | GCGC | 2 cut(s) | 518, 1340 |
| GluI | GCNGC | 2 cut(s) | 84, 2368 |
| GsaI | CCCAGC | 1 cut(s) | 1560 |
| GsuI | CTGGAG | 1 cut(s) | 1100 |
| HaeIII | GGCC | 8 cut(s) | 86, 756, 1629, 1844, 1889, 1946, 2265, 2370 |
| HapII | CCGG | 7 cut(s) | 416, 566, 611, 938, 1631, 2262, 2316 |
| HgaI | GACGC | 2 cut(s) | 555, 1166 |
| HhaI | GCGC | 2 cut(s) | 519, 1341 |
| Hin6I | GCGC | 2 cut(s) | 517, 1339 |
| HinP1I | GCGC | 2 cut(s) | 517, 1339 |
| HincII | GTYRAC | 1 cut(s) | 1615 |
| HindII | GTYRAC | 1 cut(s) | 1615 |
| HpaI | GTTAAC | 1 cut(s) | 1615 |
| HpaII | CCGG | 7 cut(s) | 416, 566, 611, 938, 1631, 2262, 2316 |
| HphI | GGTGA | 8 cut(s) | 475, 812, 952, 1091, 1115, 1415, 1469, 1510 |
| Hpy166II | GTNNAC | 4 cut(s) | 413, 1615, 1877, 2075 |
| Hpy188III | TCNNGA | 7 cut(s) | 57, 566, 623, 979, 1802, 2162, 2189 |
| Hpy8I | GTNNAC | 4 cut(s) | 413, 1615, 1877, 2075 |
| Hpy99I | CGWCG | 2 cut(s) | 218, 2082 |
| HpyCH4III | ACNGT | 4 cut(s) | 410, 928, 2003, 2129 |
| HpyCH4IV | ACGT | 8 cut(s) | 16, 178, 216, 333, 700, 735, 1873, 2077 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 953, 2364 |
| HpySE526I | ACGT | 8 cut(s) | 16, 178, 216, 333, 700, 735, 1873, 2077 |
| HspAI | GCGC | 2 cut(s) | 517, 1339 |
| Kpn2I | TCCGGA | 1 cut(s) | 565 |
| Ksp22I | TGATCA | 1 cut(s) | 1105 |
| KspAI | GTTAAC | 1 cut(s) | 1615 |
| LmnI | GCTCC | 4 cut(s) | 325, 824, 1119, 1561 |
| LweI | GCATC | 4 cut(s) | 652, 772, 1738, 2389 |
| MaeI | CTAG | 4 cut(s) | 651, 759, 1515, 2189 |
| MaeII | ACGT | 8 cut(s) | 16, 178, 216, 333, 700, 735, 1873, 2077 |
| MaeIII | GTNAC | 6 cut(s) | 54, 879, 928, 1154, 1834, 1997 |
| MflI | RGATCY | 4 cut(s) | 1640, 2173, 2241, 2503 |
| MhlI | GDGCHC | 2 cut(s) | 34, 1393 |
| MlsI | TGGCCA | 1 cut(s) | 1889 |
| MluNI | TGGCCA | 1 cut(s) | 1889 |
| MlyI | GAGTC | 3 cut(s) | 62, 402, 974 |
| MmeI | TCCRAC | 3 cut(s) | 671, 1263, 1416 |
| Mox20I | TGGCCA | 1 cut(s) | 1889 |
| MroI | TCCGGA | 1 cut(s) | 565 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2221 |
| MscI | TGGCCA | 1 cut(s) | 1889 |
| MseI | TTAA | 5 cut(s) | 998, 1251, 1596, 1614, 2444 |
| MslI | CAYNNNNRTG | 1 cut(s) | 181 |
| Msp20I | TGGCCA | 1 cut(s) | 1889 |
| MspA1I | CMGCKG | 1 cut(s) | 1120 |
| MspI | CCGG | 7 cut(s) | 416, 566, 611, 938, 1631, 2262, 2316 |
| MspR9I | CCNGG | 2 cut(s) | 1631, 2149 |
| MvaI | CCWGG | 1 cut(s) | 2149 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 953, 2364 |
| NciI | CCSGG | 1 cut(s) | 1631 |
| NcoI | CCATGG | 2 cut(s) | 287, 398 |
| NdeI | CATATG | 1 cut(s) | 388 |
| NlaIV | GGNNCC | 3 cut(s) | 321, 912, 1115 |
| NmuCI | GTSAC | 4 cut(s) | 54, 879, 1154, 1834 |
| NspI | RCATGY | 2 cut(s) | 1673, 2254 |
| OliI | CACNNNNGTG | 1 cut(s) | 181 |
| PaeI | GCATGC | 1 cut(s) | 1673 |
| PciI | ACATGT | 1 cut(s) | 2250 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 960 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2221 |
| PfeI | GAWTC | 8 cut(s) | 692, 1088, 1505, 1815, 2152, 2217, 2374, 2434 |
| PkrI | GCNGC | 2 cut(s) | 85, 2369 |
| Ple19I | CGATCG | 1 cut(s) | 2421 |
| PleI | GAGTC | 3 cut(s) | 61, 401, 973 |
| PpsI | GAGTC | 3 cut(s) | 61, 401, 973 |
| PscI | ACATGT | 1 cut(s) | 2250 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1854 |
| PsiI | TTATAA | 1 cut(s) | 456 |
| Psp6I | CCWGG | 1 cut(s) | 2147 |
| PspFI | CCCAGC | 1 cut(s) | 1556 |
| PspGI | CCWGG | 1 cut(s) | 2147 |
| PspN4I | GGNNCC | 3 cut(s) | 321, 912, 1115 |
| PspPI | GGNCC | 6 cut(s) | 755, 911, 1571, 1628, 1849, 1944 |
| PstI | CTGCAG | 1 cut(s) | 847 |
| PsuI | RGATCY | 4 cut(s) | 1640, 2173, 2241, 2503 |
| PvuI | CGATCG | 1 cut(s) | 2421 |
| PvuII | CAGCTG | 1 cut(s) | 1120 |
| RsaI | GTAC | 4 cut(s) | 104, 412, 2076, 2249 |
| RsaNI | GTAC | 4 cut(s) | 103, 411, 2075, 2248 |
| RseI | CAYNNNNRTG | 1 cut(s) | 181 |
| SaqAI | TTAA | 5 cut(s) | 998, 1251, 1596, 1614, 2444 |
| SatI | GCNGC | 2 cut(s) | 84, 2368 |
| Sau96I | GGNCC | 6 cut(s) | 755, 911, 1571, 1628, 1849, 1944 |
| SchI | GAGTC | 3 cut(s) | 62, 402, 974 |
| ScrFI | CCNGG | 2 cut(s) | 1631, 2149 |
| SduI | GDGCHC | 2 cut(s) | 34, 1393 |
| SfaNI | GCATC | 4 cut(s) | 652, 772, 1738, 2389 |
| SfcI | CTRYAG | 3 cut(s) | 790, 843, 899 |
| SinI | GGWCC | 3 cut(s) | 911, 1571, 1849 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 181 |
| SpeI | ACTAGT | 1 cut(s) | 1514 |
| SphI | GCATGC | 1 cut(s) | 1673 |
| SsiI | CCGC | 6 cut(s) | 83, 189, 630, 947, 1738, 2367 |
| SspMI | CTAG | 4 cut(s) | 651, 759, 1515, 2189 |
| StyD4I | CCNGG | 2 cut(s) | 1629, 2147 |
| StyI | CCWWGG | 5 cut(s) | 287, 398, 1574, 1674, 1947 |
| TaaI | ACNGT | 4 cut(s) | 410, 928, 2003, 2129 |
| TaiI | ACGT | 8 cut(s) | 19, 181, 219, 336, 703, 738, 1876, 2080 |
| TaqI | TCGA | 9 cut(s) | 12, 978, 984, 1393, 1465, 1508, 2155, 2421, 2493 |
| TatI | WGTACW | 2 cut(s) | 410, 2247 |
| TauI | GCSGC | 2 cut(s) | 86, 2370 |
| TfiI | GAWTC | 8 cut(s) | 692, 1088, 1505, 1815, 2152, 2217, 2374, 2434 |
| Tru1I | TTAA | 5 cut(s) | 998, 1251, 1596, 1614, 2444 |
| Tru9I | TTAA | 5 cut(s) | 998, 1251, 1596, 1614, 2444 |
| TscAI | CASTG | 4 cut(s) | 99, 814, 931, 2008 |
| TseFI | GTSAC | 4 cut(s) | 54, 879, 1154, 1834 |
| Tsp45I | GTSAC | 4 cut(s) | 54, 879, 1154, 1834 |
| TspDTI | ATGAA | 6 cut(s) | 615, 1154, 1413, 1731, 2283, 2439 |
| TspGWI | ACGGA | 4 cut(s) | 746, 1221, 1457, 2173 |
| TspRI | CASTG | 4 cut(s) | 99, 814, 931, 2008 |
| VpaK11BI | GGWCC | 3 cut(s) | 911, 1571, 1849 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 762 |
| XapI | RAATTY | 7 cut(s) | 361, 569, 590, 1286, 1718, 2063, 2458 |
| XbaI | TCTAGA | 1 cut(s) | 2188 |
| XceI | RCATGY | 2 cut(s) | 1673, 2254 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2221 |
| XspI | CTAG | 4 cut(s) | 651, 759, 1515, 2189 |