ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RNA_pol_A_bac | PF01000 | 69 - 138 | 1.8e-13 | RNA polymerase Rpb3/RpoA insert domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 580 |
| AccII | CGCG | 1 cut(s) | 143 |
| AcsI | RAATTY | 2 cut(s) | 258, 268 |
| AcvI | CACGTG | 1 cut(s) | 191 |
| AfaI | GTAC | 1 cut(s) | 252 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 577 |
| AflIII | ACRYGT | 2 cut(s) | 179, 188 |
| AgsI | TTSAA | 4 cut(s) | 56, 242, 274, 455 |
| AjnI | CCWGG | 2 cut(s) | 337, 623 |
| AleI | CACNNNNGTG | 1 cut(s) | 40 |
| AluBI | AGCT | 3 cut(s) | 155, 472, 577 |
| AluI | AGCT | 3 cut(s) | 155, 472, 577 |
| Alw26I | GTCTC | 1 cut(s) | 511 |
| AoxI | GGCC | 3 cut(s) | 102, 118, 432 |
| ApoI | RAATTY | 2 cut(s) | 258, 268 |
| AspS9I | GGNCC | 2 cut(s) | 103, 335 |
| AvaII | GGWCC | 1 cut(s) | 335 |
| BanI | GGYRCC | 1 cut(s) | 580 |
| BbrPI | CACGTG | 1 cut(s) | 191 |
| BccI | CCATC | 2 cut(s) | 236, 428 |
| BciT130I | CCWGG | 2 cut(s) | 339, 625 |
| BcoDI | GTCTC | 1 cut(s) | 511 |
| BfaI | CTAG | 1 cut(s) | 618 |
| BfmI | CTRYAG | 2 cut(s) | 38, 378 |
| BglII | AGATCT | 2 cut(s) | 197, 641 |
| Bme1390I | CCNGG | 2 cut(s) | 339, 625 |
| Bme18I | GGWCC | 1 cut(s) | 335 |
| BmgT120I | GGNCC | 2 cut(s) | 103, 335 |
| BmiI | GGNNCC | 3 cut(s) | 105, 336, 582 |
| BmrFI | CCNGG | 2 cut(s) | 339, 625 |
| BmsI | GCATC | 2 cut(s) | 135, 147 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 144, 176 |
| BpuEI | CTTGAG | 1 cut(s) | 339 |
| BsaAI | YACGTR | 1 cut(s) | 191 |
| BsaJI | CCNNGG | 1 cut(s) | 338 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 577 |
| Bse118I | RCCGGY | 1 cut(s) | 485 |
| BseBI | CCWGG | 2 cut(s) | 339, 625 |
| BseDI | CCNNGG | 1 cut(s) | 338 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 577 |
| BseMII | CTCAG | 2 cut(s) | 175, 192 |
| Bsh1236I | CGCG | 1 cut(s) | 143 |
| BshFI | GGCC | 3 cut(s) | 104, 120, 434 |
| BshNI | GGYRCC | 1 cut(s) | 580 |
| BsiSI | CCGG | 1 cut(s) | 486 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 577 |
| BsmAI | GTCTC | 1 cut(s) | 511 |
| BsnI | GGCC | 3 cut(s) | 104, 120, 434 |
| Bsp1407I | TGTACA | 1 cut(s) | 250 |
| Bsp143I | GATC | 3 cut(s) | 197, 492, 641 |
| Bsp68I | TCGCGA | 1 cut(s) | 143 |
| BspANI | GGCC | 3 cut(s) | 104, 120, 434 |
| BspCNI | CTCAG | 2 cut(s) | 174, 193 |
| BspFNI | CGCG | 1 cut(s) | 143 |
| BspLI | GGNNCC | 3 cut(s) | 105, 336, 582 |
| BspQI | GCTCTTC | 1 cut(s) | 145 |
| BspT107I | GGYRCC | 1 cut(s) | 580 |
| BsrFI | RCCGGY | 1 cut(s) | 485 |
| BsrGI | TGTACA | 1 cut(s) | 250 |
| BssAI | RCCGGY | 1 cut(s) | 485 |
| BssECI | CCNNGG | 1 cut(s) | 338 |
| BssMI | GATC | 3 cut(s) | 197, 492, 641 |
| Bst2UI | CCWGG | 2 cut(s) | 339, 625 |
| Bst4CI | ACNGT | 3 cut(s) | 22, 42, 71 |
| Bst6I | CTCTTC | 1 cut(s) | 145 |
| BstAUI | TGTACA | 1 cut(s) | 250 |
| BstBAI | YACGTR | 1 cut(s) | 191 |
| BstC8I | GCNNGC | 1 cut(s) | 579 |
| BstDEI | CTNAG | 3 cut(s) | 161, 201, 522 |
| BstFNI | CGCG | 1 cut(s) | 143 |
| BstKTI | GATC | 3 cut(s) | 200, 495, 644 |
| BstMAI | GTCTC | 1 cut(s) | 511 |
| BstMBI | GATC | 3 cut(s) | 197, 492, 641 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 440, 469 |
| BstNI | CCWGG | 2 cut(s) | 339, 625 |
| BstNSI | RCATGY | 1 cut(s) | 183 |
| BstSCI | CCNGG | 2 cut(s) | 337, 623 |
| BstSFI | CTRYAG | 2 cut(s) | 38, 378 |
| BstUI | CGCG | 1 cut(s) | 143 |
| BstX2I | RGATCY | 2 cut(s) | 197, 641 |
| BstYI | RGATCY | 2 cut(s) | 197, 641 |
| BsuRI | GGCC | 3 cut(s) | 104, 120, 434 |
| BtgZI | GCGATG | 2 cut(s) | 124, 158 |
| BtsIMutI | CAGTG | 1 cut(s) | 47 |
| BtuMI | TCGCGA | 1 cut(s) | 143 |
| Cac8I | GCNNGC | 1 cut(s) | 579 |
| Cfr10I | RCCGGY | 1 cut(s) | 485 |
| Cfr13I | GGNCC | 2 cut(s) | 103, 335 |
| CseI | GACGC | 3 cut(s) | 65, 99, 306 |
| CsiI | ACCWGGT | 1 cut(s) | 623 |
| Csp6I | GTAC | 1 cut(s) | 251 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 573, 608 |
| CviAII | CATG | 4 cut(s) | 180, 254, 460, 466 |
| CviJI | RGCY | 9 cut(s) | 104, 120, 125, 155, 434, 458, 472, 526, 577 |
| CviKI_1 | RGCY | 9 cut(s) | 104, 120, 125, 155, 434, 458, 472, 526, 577 |
| CviQI | GTAC | 1 cut(s) | 251 |
| DdeI | CTNAG | 3 cut(s) | 161, 201, 522 |
| DpnI | GATC | 3 cut(s) | 199, 494, 643 |
| DpnII | GATC | 3 cut(s) | 197, 492, 641 |
| Eam1104I | CTCTTC | 1 cut(s) | 145 |
| EarI | CTCTTC | 1 cut(s) | 145 |
| Eco32I | GATATC | 1 cut(s) | 361 |
| Eco47I | GGWCC | 1 cut(s) | 335 |
| Eco72I | CACGTG | 1 cut(s) | 191 |
| EcoO109I | RGGNCCY | 1 cut(s) | 335 |
| EcoRII | CCWGG | 2 cut(s) | 337, 623 |
| EcoRV | GATATC | 1 cut(s) | 361 |
| FaeI | CATG | 4 cut(s) | 183, 257, 463, 469 |
| FatI | CATG | 4 cut(s) | 179, 253, 459, 465 |
| FspBI | CTAG | 1 cut(s) | 618 |
| HaeIII | GGCC | 3 cut(s) | 104, 120, 434 |
| HapII | CCGG | 1 cut(s) | 486 |
| HgaI | GACGC | 3 cut(s) | 65, 99, 306 |
| Hin1II | CATG | 4 cut(s) | 183, 257, 463, 469 |
| HindIII | AAGCTT | 1 cut(s) | 470 |
| HinfI | GANTC | 3 cut(s) | 56, 245, 504 |
| HpaII | CCGG | 1 cut(s) | 486 |
| Hpy188I | TCNGA | 3 cut(s) | 33, 164, 202 |
| Hpy188III | TCNNGA | 8 cut(s) | 8, 60, 142, 242, 356, 412, 535, 618 |
| HpyAV | CCTTC | 1 cut(s) | 167 |
| HpyCH4III | ACNGT | 3 cut(s) | 22, 42, 71 |
| HpyCH4IV | ACGT | 1 cut(s) | 190 |
| HpyCH4V | TGCA | 4 cut(s) | 194, 443, 463, 638 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 440, 469 |
| HpyF3I | CTNAG | 3 cut(s) | 161, 201, 522 |
| HpySE526I | ACGT | 1 cut(s) | 190 |
| Hsp92II | CATG | 4 cut(s) | 183, 257, 463, 469 |
| Kzo9I | GATC | 3 cut(s) | 197, 492, 641 |
| LguI | GCTCTTC | 1 cut(s) | 145 |
| LweI | GCATC | 2 cut(s) | 135, 147 |
| MabI | ACCWGGT | 1 cut(s) | 623 |
| MaeI | CTAG | 1 cut(s) | 618 |
| MaeII | ACGT | 1 cut(s) | 190 |
| MaeIII | GTNAC | 3 cut(s) | 16, 346, 646 |
| MalI | GATC | 3 cut(s) | 199, 494, 643 |
| MboI | GATC | 3 cut(s) | 197, 492, 641 |
| MboII | GAAGA | 2 cut(s) | 162, 608 |
| MflI | RGATCY | 2 cut(s) | 197, 641 |
| MluCI | AATT | 3 cut(s) | 258, 268, 279 |
| MlyI | GAGTC | 1 cut(s) | 513 |
| MnlI | CCTC | 2 cut(s) | 385, 445 |
| MseI | TTAA | 2 cut(s) | 263, 652 |
| MslI | CAYNNNNRTG | 3 cut(s) | 40, 143, 464 |
| MspI | CCGG | 1 cut(s) | 486 |
| MspR9I | CCNGG | 2 cut(s) | 339, 625 |
| MvaI | CCWGG | 2 cut(s) | 339, 625 |
| MvnI | CGCG | 1 cut(s) | 143 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 440, 469 |
| NdeII | GATC | 3 cut(s) | 197, 492, 641 |
| NlaIII | CATG | 4 cut(s) | 183, 257, 463, 469 |
| NlaIV | GGNNCC | 3 cut(s) | 105, 336, 582 |
| NmuCI | GTSAC | 1 cut(s) | 646 |
| NruI | TCGCGA | 1 cut(s) | 143 |
| NspI | RCATGY | 1 cut(s) | 183 |
| OliI | CACNNNNGTG | 1 cut(s) | 40 |
| PciI | ACATGT | 1 cut(s) | 179 |
| PciSI | GCTCTTC | 1 cut(s) | 145 |
| PfeI | GAWTC | 2 cut(s) | 56, 245 |
| PleI | GAGTC | 1 cut(s) | 512 |
| PmaCI | CACGTG | 1 cut(s) | 191 |
| PmlI | CACGTG | 1 cut(s) | 191 |
| PpsI | GAGTC | 1 cut(s) | 512 |
| Ppu21I | YACGTR | 1 cut(s) | 191 |
| PpuMI | RGGWCCY | 1 cut(s) | 335 |
| PscI | ACATGT | 1 cut(s) | 179 |
| Psp5II | RGGWCCY | 1 cut(s) | 335 |
| Psp6I | CCWGG | 2 cut(s) | 337, 623 |
| PspCI | CACGTG | 1 cut(s) | 191 |
| PspGI | CCWGG | 2 cut(s) | 337, 623 |
| PspN4I | GGNNCC | 3 cut(s) | 105, 336, 582 |
| PspPI | GGNCC | 2 cut(s) | 103, 335 |
| PspPPI | RGGWCCY | 1 cut(s) | 335 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 169, 201 |
| PsuI | RGATCY | 2 cut(s) | 197, 641 |
| RruI | TCGCGA | 1 cut(s) | 143 |
| RsaI | GTAC | 1 cut(s) | 252 |
| RsaNI | GTAC | 1 cut(s) | 251 |
| RseI | CAYNNNNRTG | 3 cut(s) | 40, 143, 464 |
| SapI | GCTCTTC | 1 cut(s) | 145 |
| SaqAI | TTAA | 2 cut(s) | 263, 652 |
| Sau3AI | GATC | 3 cut(s) | 197, 492, 641 |
| Sau96I | GGNCC | 2 cut(s) | 103, 335 |
| SchI | GAGTC | 1 cut(s) | 513 |
| ScrFI | CCNGG | 2 cut(s) | 339, 625 |
| SetI | ASST | 6 cut(s) | 157, 193, 238, 474, 579, 626 |
| SexAI | ACCWGGT | 1 cut(s) | 623 |
| SfaNI | GCATC | 2 cut(s) | 135, 147 |
| SfcI | CTRYAG | 2 cut(s) | 38, 378 |
| SinI | GGWCC | 1 cut(s) | 335 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 40, 143, 464 |
| SmlI | CTYRAG | 1 cut(s) | 354 |
| SmoI | CTYRAG | 1 cut(s) | 354 |
| Sse9I | AATT | 3 cut(s) | 258, 268, 279 |
| SspI | AATATT | 1 cut(s) | 221 |
| SspMI | CTAG | 1 cut(s) | 618 |
| StyD4I | CCNGG | 2 cut(s) | 337, 623 |
| TaaI | ACNGT | 3 cut(s) | 22, 42, 71 |
| TaiI | ACGT | 1 cut(s) | 193 |
| TaqI | TCGA | 1 cut(s) | 7 |
| TasI | AATT | 3 cut(s) | 258, 268, 279 |
| TatI | WGTACW | 1 cut(s) | 250 |
| TfiI | GAWTC | 2 cut(s) | 56, 245 |
| Tru1I | TTAA | 2 cut(s) | 263, 652 |
| Tru9I | TTAA | 2 cut(s) | 263, 652 |
| TscAI | CASTG | 1 cut(s) | 47 |
| TseFI | GTSAC | 1 cut(s) | 646 |
| Tsp45I | GTSAC | 1 cut(s) | 646 |
| TspDTI | ATGAA | 4 cut(s) | 128, 270, 281, 482 |
| TspRI | CASTG | 1 cut(s) | 47 |
| VpaK11BI | GGWCC | 1 cut(s) | 335 |
| XapI | RAATTY | 2 cut(s) | 258, 268 |
| XbaI | TCTAGA | 1 cut(s) | 617 |
| XceI | RCATGY | 1 cut(s) | 183 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 427 |
| XspI | CTAG | 1 cut(s) | 618 |