Rh4DG342600

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000619
Physical Location & Seq
Reverse (-)
56519567 .. 56519986
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG342600.1

Sequence Viewer

Length: 420 bp
ATGAAGTACTTAAGGCTTGTGAAAAGGAGGGGGGGTCCTCCCAGGTGCCCTAGGAAAATGAAGGCCTTCAGGAGGCGCGTGGAGGGGTGTCTTCTGTGTGATCTAAACTTTGTTGGGCCATGCTTCACTTGGAGGGAAAATCGTGCAGGACAAGAAATCAAGGTACGTCTGGATCGCTTCATGGCTACCCAGGAATGGACGGACATTTTCTCGGTGTCCCGGGTTACCAACTTGAAATCTTCAAAGTCAGATCACCATCCGATTTTGTTGGAGGTACGCTCTACTAGACCAAAGAAGAGGAGGAAAAAGAAGAGTTTTCGTTTTGAAGCTCATTGGTTACAAGATGAAGAATGTGCCAGCGTTGTGAAAAGAGGTTGGGAAGACGTAGAGGCAGAGATCTTTTTCAAACTATTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

139

Amino Acids

16.66

Weight (kDa)

10.29

Isoelectric Point (pI)

55.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 45
AccII CGCG 1 cut(s) 78
AclWI GGATC 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 52
AfaI GTAC 3 cut(s) 8, 165, 276
AfiI CCNNNNNNNGG 2 cut(s) 72, 195
AflII CTTAAG 1 cut(s) 10
AgsI TTSAA 4 cut(s) 235, 243, 326, 406
AjnI CCWGG 2 cut(s) 41, 189
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
AlwI GGATC 1 cut(s) 180
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 2 cut(s) 63, 116
Asp700I GAANNNNTTC 1 cut(s) 65
AspA2I CCTAGG 1 cut(s) 50
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 35, 116
AsuC2I CCSGG 2 cut(s) 220, 221
AsuHPI GGTGA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 219
AvaII GGWCC 1 cut(s) 35
AvrII CCTAGG 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 50
BanI GGYRCC 1 cut(s) 45
BbsI GAAGAC 2 cut(s) 83, 387
BccI CCATC 1 cut(s) 264
BciT130I CCWGG 2 cut(s) 43, 191
BcnI CCSGG 2 cut(s) 220, 221
BfaI CTAG 2 cut(s) 51, 285
BfrI CTTAAG 1 cut(s) 10
BglII AGATCT 1 cut(s) 396
BlnI CCTAGG 1 cut(s) 50
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 4 cut(s) 43, 191, 220, 221
Bme18I GGWCC 1 cut(s) 35
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 35, 116
BmiI GGNNCC 2 cut(s) 36, 47
BmrFI CCNGG 4 cut(s) 43, 191, 220, 221
BpiI GAAGAC 2 cut(s) 83, 387
BplI GAGNNNNNCTC 2 cut(s) 263, 295
BpuMI CCSGG 2 cut(s) 220, 221
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 4 cut(s) 41, 50, 189, 219
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 195
Bse8I GATNNNNATC 1 cut(s) 255
BseBI CCWGG 2 cut(s) 43, 191
BseDI CCNNGG 4 cut(s) 41, 50, 189, 219
BseGI GGATG 1 cut(s) 256
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 72, 195
BseRI GAGGAG 1 cut(s) 313
BseSI GKGCMC 1 cut(s) 50
BsgI GTGCAG 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 65, 118
BshNI GGYRCC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 1 cut(s) 220
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 2 cut(s) 72, 195
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 2 cut(s) 65, 118
BsoBI CYCGRG 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 4 cut(s) 100, 172, 250, 396
BspANI GGCC 2 cut(s) 65, 118
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 36, 47
BspPI GGATC 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 45
BspTI CTTAAG 1 cut(s) 10
BssECI CCNNGG 4 cut(s) 41, 50, 189, 219
BssMI GATC 4 cut(s) 100, 172, 250, 396
BssT1I CCWWGG 1 cut(s) 50
Bst2UI CCWGG 2 cut(s) 43, 191
Bst6I CTCTTC 2 cut(s) 290, 305
BstAFI CTTAAG 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 358
BstEII GGTNACC 1 cut(s) 223
BstENI CCTNNNNNAGG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 78
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 4 cut(s) 103, 175, 253, 399
BstMBI GATC 4 cut(s) 100, 172, 250, 396
BstNI CCWGG 2 cut(s) 43, 191
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 4 cut(s) 41, 189, 218, 219
BstSLI GKGCMC 1 cut(s) 50
BstUI CGCG 1 cut(s) 78
BstV2I GAAGAC 2 cut(s) 83, 387
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
BsuRI GGCC 2 cut(s) 65, 118
BtsCI GGATG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 358
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 35, 116
Cfr9I CCCGGG 1 cut(s) 219
Csp6I GTAC 3 cut(s) 7, 164, 275
CviAII CATG 2 cut(s) 120, 181
CviJI RGCY 5 cut(s) 16, 65, 118, 185, 329
CviKI_1 RGCY 5 cut(s) 16, 65, 118, 185, 329
CviQI GTAC 3 cut(s) 7, 164, 275
DpnI GATC 4 cut(s) 102, 174, 252, 398
DpnII GATC 4 cut(s) 100, 172, 250, 396
Eam1104I CTCTTC 2 cut(s) 290, 305
EarI CTCTTC 2 cut(s) 290, 305
Eco130I CCWWGG 1 cut(s) 50
Eco147I AGGCCT 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 219
Eco91I GGTNACC 1 cut(s) 223
EcoNI CCTNNNNNAGG 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 35
EcoO65I GGTNACC 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 41, 189
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 2 cut(s) 123, 184
FaiI YATR 2 cut(s) 121, 182
FaqI GGGAC 1 cut(s) 202
FatI CATG 2 cut(s) 119, 180
FokI GGATG 1 cut(s) 243
FspBI CTAG 2 cut(s) 51, 285
GlaI GCGC 1 cut(s) 77
HaeIII GGCC 2 cut(s) 65, 118
HapII CCGG 1 cut(s) 220
HhaI GCGC 1 cut(s) 78
Hin1II CATG 2 cut(s) 123, 184
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HpaII CCGG 1 cut(s) 220
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 2 cut(s) 250, 261
Hpy188III TCNNGA 2 cut(s) 70, 170
HpyAV CCTTC 2 cut(s) 55, 76
HpyCH4IV ACGT 2 cut(s) 166, 384
HpyCH4V TGCA 1 cut(s) 146
HpySE526I ACGT 2 cut(s) 166, 384
Hsp92II CATG 2 cut(s) 123, 184
HspAI GCGC 1 cut(s) 76
Kzo9I GATC 4 cut(s) 100, 172, 250, 396
LpnPI CCDG 9 cut(s) 28, 55, 55, 132, 155, 176, 203, 233, 370
MaeI CTAG 2 cut(s) 51, 285
MaeII ACGT 2 cut(s) 166, 384
MaeIII GTNAC 2 cut(s) 223, 336
MalI GATC 4 cut(s) 102, 174, 252, 398
MboI GATC 4 cut(s) 100, 172, 250, 396
MboII GAAGA 6 cut(s) 83, 231, 307, 322, 359, 392
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 249
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 2 cut(s) 11, 418
MspCI CTTAAG 1 cut(s) 10
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 4 cut(s) 43, 191, 220, 221
MvaI CCWGG 2 cut(s) 43, 191
MvnI CGCG 1 cut(s) 78
NciI CCSGG 2 cut(s) 220, 221
NdeII GATC 4 cut(s) 100, 172, 250, 396
NlaIII CATG 2 cut(s) 123, 184
NlaIV GGNNCC 2 cut(s) 36, 47
PceI AGGCCT 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 65
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 2 cut(s) 41, 189
PspEI GGTNACC 1 cut(s) 223
PspGI CCWGG 2 cut(s) 41, 189
PspN4I GGNNCC 2 cut(s) 36, 47
PspPI GGNCC 2 cut(s) 35, 116
PspPPI RGGWCCY 1 cut(s) 35
PsuI RGATCY 1 cut(s) 396
RsaI GTAC 3 cut(s) 8, 165, 276
RsaNI GTAC 3 cut(s) 7, 164, 275
SaqAI TTAA 2 cut(s) 11, 418
Sau3AI GATC 4 cut(s) 100, 172, 250, 396
Sau96I GGNCC 2 cut(s) 35, 116
ScaI AGTACT 1 cut(s) 8
ScrFI CCNGG 4 cut(s) 43, 191, 220, 221
SduI GDGCHC 1 cut(s) 50
SetI ASST 7 cut(s) 47, 165, 169, 276, 331, 376, 387
SinI GGWCC 1 cut(s) 35
SmaI CCCGGG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SseBI AGGCCT 1 cut(s) 65
SspMI CTAG 2 cut(s) 51, 285
StuI AGGCCT 1 cut(s) 65
StyD4I CCNGG 4 cut(s) 41, 189, 218, 219
StyI CCWWGG 1 cut(s) 50
TaiI ACGT 2 cut(s) 169, 387
TatI WGTACW 1 cut(s) 6
Tru1I TTAA 2 cut(s) 11, 418
Tru9I TTAA 2 cut(s) 11, 418
TspDTI ATGAA 4 cut(s) 17, 74, 169, 360
TspGWI ACGGA 1 cut(s) 215
TspMI CCCGGG 1 cut(s) 219
Vha464I CTTAAG 1 cut(s) 10
VpaK11BI GGWCC 1 cut(s) 35
XagI CCTNNNNNAGG 1 cut(s) 70
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XmaI CCCGGG 1 cut(s) 219
XmaJI CCTAGG 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 2 cut(s) 51, 285
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.