Rmu_sc0014130.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014130.1
OG0000619
Physical Location & Seq
Forward (+)
9944 .. 10762
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014130.1_g000003.1.cds

Sequence Viewer

Length: 819 bp
atgaatgacatgaaggaggcgttggcgttttgtgagttgggggatattaattttgttggtccaagattcacttggagggagataagaggtggggaggaggtccgagtgcgcctagacagatttttgagttccttgggttggagggatttgtctccggggtctagagttcgacatctggatccttgtacttctgatcatctcccattacttcttgaagtgcgtgtgcaaaagaagaggaggaaaaaaaagaggaaaaagagatttaaatttgagcagtgctggcttttggatgaaaaatgcaaggaggtagttcaaacaagttgggttagtgtgacggggactgggccatcccaagctttagggaacaaaattcaaaaaacccgtgtagctctagagtcctggagtgaggagaacttcatccgtattgggaaggagatcgaaaagacccggtgtcaactctcggtcttctttgacacttcgctctcggcttcgattgatggtgttagaggagccctccagtctagacttaatgatctccttcatcaagcgcagtgtttttggcgtcagcgtgcaaaagtcttttggttaaaagatggtgaccttaatattaggttttttcatcagagagcgaagaatcgtaggaagaagaatacaatattggggttgtttaatggtaacggtgattggtgcactgaagaggcagagttggaagacattgtgttacactactttaacgagttgtttacttcgtctaaccctgggggttttgagaatattctagaaggtgtgacgcggtgtattacggagttggataattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

272

Amino Acids

31.65

Weight (kDa)

9.22

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 793
AciI CCGC 1 cut(s) 793
AclWI GGATC 2 cut(s) 173, 186
AcsI RAATTY 2 cut(s) 266, 369
AcuI CTGAAG 1 cut(s) 714
AcyI GRCGYC 1 cut(s) 562
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 3 cut(s) 215, 314, 374
AhdI GACNNNNNGTC 1 cut(s) 450
AjnI CCWGG 2 cut(s) 398, 757
AjuI GAANNNNNNNTTGG 3 cut(s) 37, 641, 673
AluBI AGCT 2 cut(s) 356, 389
AluI AGCT 2 cut(s) 356, 389
Alw21I GWGCWC 1 cut(s) 692
Alw26I GTCTC 1 cut(s) 156
Alw44I GTGCAC 1 cut(s) 688
AlwI GGATC 2 cut(s) 173, 186
AoxI GGCC 1 cut(s) 344
ApaLI GTGCAC 1 cut(s) 688
ApoI RAATTY 2 cut(s) 266, 369
AseI ATTAAT 1 cut(s) 48
AspLEI GCGC 2 cut(s) 111, 550
AspS9I GGNCC 3 cut(s) 59, 100, 344
AsuC2I CCSGG 2 cut(s) 156, 448
AsuHPI GGTGA 2 cut(s) 608, 692
AvaII GGWCC 2 cut(s) 59, 100
BaeGI GKGCMC 1 cut(s) 692
BamHI GGATCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 514
BbsI GAAGAC 2 cut(s) 457, 717
Bbv12I GWGCWC 1 cut(s) 692
BccI CCATC 3 cut(s) 355, 491, 587
BciT130I CCWGG 2 cut(s) 400, 759
BclI TGATCA 1 cut(s) 193
BcnI CCSGG 2 cut(s) 156, 448
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 5 cut(s) 113, 162, 392, 522, 779
Bme1390I CCNGG 4 cut(s) 156, 400, 448, 759
Bme18I GGWCC 2 cut(s) 59, 100
BmeRI GACNNNNNGTC 1 cut(s) 450
BmgT120I GGNCC 3 cut(s) 59, 100, 344
BmiI GGNNCC 2 cut(s) 180, 511
BmrFI CCNGG 4 cut(s) 156, 400, 448, 759
BmrI ACTGGG 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 351
BpiI GAAGAC 2 cut(s) 457, 717
BplI GAGNNNNNCTC 2 cut(s) 498, 530
BpmI CTGGAG 2 cut(s) 421, 500
BpuMI CCSGG 2 cut(s) 156, 448
BsaHI GRCGYC 1 cut(s) 562
BsaJI CCNNGG 4 cut(s) 132, 155, 757, 758
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 2 cut(s) 346, 517
BseBI CCWGG 2 cut(s) 400, 759
BseDI CCNNGG 4 cut(s) 132, 155, 757, 758
BseGI GGATG 3 cut(s) 295, 347, 417
BseLI CCNNNNNNNGG 1 cut(s) 138
BseNI ACTGG 2 cut(s) 346, 517
BseRI GAGGAG 4 cut(s) 110, 250, 422, 522
BseSI GKGCMC 1 cut(s) 692
Bsh1236I CGCG 1 cut(s) 793
BshFI GGCC 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 692
BsiSI CCGG 2 cut(s) 155, 448
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 352
BsnI GGCC 1 cut(s) 346
Bsp1286I GDGCHC 2 cut(s) 514, 692
Bsp143I GATC 4 cut(s) 178, 193, 435, 532
BspACI CCGC 1 cut(s) 793
BspANI GGCC 1 cut(s) 346
BspFNI CGCG 1 cut(s) 793
BspLI GGNNCC 2 cut(s) 180, 511
BspPI GGATC 2 cut(s) 173, 186
BsrI ACTGG 2 cut(s) 346, 517
BssECI CCNNGG 4 cut(s) 132, 155, 757, 758
BssMI GATC 4 cut(s) 178, 193, 435, 532
BssNI GRCGYC 1 cut(s) 562
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 400, 759
Bst4CI ACNGT 1 cut(s) 680
Bst6I CTCTTC 2 cut(s) 227, 690
BstACI GRCGYC 1 cut(s) 562
BstC8I GCNNGC 2 cut(s) 281, 570
BstEII GGTNACC 1 cut(s) 596
BstF5I GGATG 3 cut(s) 295, 347, 417
BstFNI CGCG 1 cut(s) 793
BstHHI GCGC 2 cut(s) 111, 550
BstKTI GATC 4 cut(s) 181, 196, 438, 535
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 4 cut(s) 178, 193, 435, 532
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstNI CCWGG 2 cut(s) 400, 759
BstPI GGTNACC 1 cut(s) 596
BstSCI CCNGG 4 cut(s) 154, 398, 446, 757
BstSLI GKGCMC 1 cut(s) 692
BstUI CGCG 1 cut(s) 793
BstV2I GAAGAC 2 cut(s) 457, 717
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 1 cut(s) 346
BtsCI GGATG 3 cut(s) 295, 347, 417
BtsI GCAGTG 2 cut(s) 281, 557
BtsIMutI CAGTG 3 cut(s) 281, 557, 690
Cac8I GCNNGC 2 cut(s) 281, 570
CfoI GCGC 2 cut(s) 111, 550
Cfr13I GGNCC 3 cut(s) 59, 100, 344
CseI GACGC 2 cut(s) 551, 799
Csp6I GTAC 1 cut(s) 186
CviAII CATG 1 cut(s) 10
CviJI RGCY 6 cut(s) 283, 346, 356, 389, 488, 512
CviKI_1 RGCY 6 cut(s) 283, 346, 356, 389, 488, 512
CviQI GTAC 1 cut(s) 186
DpnI GATC 4 cut(s) 180, 195, 437, 534
DpnII GATC 4 cut(s) 178, 193, 435, 532
DraI TTTAAA 1 cut(s) 265
DriI GACNNNNNGTC 1 cut(s) 450
Eam1104I CTCTTC 2 cut(s) 227, 690
Eam1105I GACNNNNNGTC 1 cut(s) 450
EarI CTCTTC 2 cut(s) 227, 690
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 514
Eco47I GGWCC 2 cut(s) 59, 100
Eco57I CTGAAG 1 cut(s) 714
Eco91I GGTNACC 1 cut(s) 596
EcoO65I GGTNACC 1 cut(s) 596
EcoRII CCWGG 2 cut(s) 398, 757
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 13
FaiI YATR 1 cut(s) 11
FalI AAGNNNNNCTT 2 cut(s) 55, 87
FaqI GGGAC 1 cut(s) 352
FatI CATG 1 cut(s) 9
FbaI TGATCA 1 cut(s) 193
FokI GGATG 3 cut(s) 302, 334, 404
FriOI GRGCYC 1 cut(s) 514
FspBI CTAG 5 cut(s) 113, 162, 392, 522, 779
GlaI GCGC 2 cut(s) 110, 549
GsuI CTGGAG 2 cut(s) 421, 500
HaeIII GGCC 1 cut(s) 346
HapII CCGG 2 cut(s) 155, 448
HgaI GACGC 2 cut(s) 551, 799
HhaI GCGC 2 cut(s) 111, 550
Hin1I GRCGYC 1 cut(s) 562
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 2 cut(s) 109, 548
HinP1I GCGC 2 cut(s) 109, 548
HincII GTYRAC 1 cut(s) 455
HindII GTYRAC 1 cut(s) 455
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 3 cut(s) 66, 395, 634
HpaII CCGG 2 cut(s) 155, 448
HphI GGTGA 2 cut(s) 608, 692
Hpy166II GTNNAC 3 cut(s) 455, 690, 744
Hpy188I TCNGA 3 cut(s) 104, 193, 624
Hpy188III TCNNGA 6 cut(s) 162, 176, 212, 392, 522, 779
Hpy8I GTNNAC 3 cut(s) 455, 690, 744
HpyAV CCTTC 4 cut(s) 7, 424, 548, 776
HpyCH4III ACNGT 1 cut(s) 680
HpyCH4V TGCA 4 cut(s) 226, 300, 572, 690
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
Hsp92I GRCGYC 1 cut(s) 562
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 2 cut(s) 109, 548
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 4 cut(s) 178, 193, 435, 532
LmnI GCTCC 1 cut(s) 509
MaeI CTAG 5 cut(s) 113, 162, 392, 522, 779
MaeIII GTNAC 5 cut(s) 331, 596, 674, 720, 787
MalI GATC 4 cut(s) 180, 195, 437, 534
MboI GATC 4 cut(s) 178, 193, 435, 532
MboII GAAGA 7 cut(s) 244, 457, 643, 655, 658, 707, 722
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 2 cut(s) 514, 692
MluCI AATT 4 cut(s) 49, 266, 369, 814
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 3 cut(s) 119, 687, 789
MseI TTAA 7 cut(s) 48, 264, 528, 587, 603, 669, 732
MspI CCGG 2 cut(s) 155, 448
MspR9I CCNGG 4 cut(s) 156, 400, 448, 759
MvaI CCWGG 2 cut(s) 400, 759
MvnI CGCG 1 cut(s) 793
MwoI GCNNNNNNNGC 1 cut(s) 280
NciI CCSGG 2 cut(s) 156, 448
NdeII GATC 4 cut(s) 178, 193, 435, 532
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 2 cut(s) 180, 511
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 3 cut(s) 331, 596, 787
PasI CCCWGGG 1 cut(s) 758
PfeI GAWTC 2 cut(s) 66, 634
PfoI TCCNGGA 1 cut(s) 398
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 48
Psp6I CCWGG 2 cut(s) 398, 757
PspEI GGTNACC 1 cut(s) 596
PspGI CCWGG 2 cut(s) 398, 757
PspN4I GGNNCC 2 cut(s) 180, 511
PspPI GGNCC 3 cut(s) 59, 100, 344
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SaqAI TTAA 7 cut(s) 48, 264, 528, 587, 603, 669, 732
Sau3AI GATC 4 cut(s) 178, 193, 435, 532
Sau96I GGNCC 3 cut(s) 59, 100, 344
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 4 cut(s) 156, 400, 448, 759
SduI GDGCHC 2 cut(s) 514, 692
SetI ASST 8 cut(s) 91, 102, 309, 358, 391, 603, 614, 787
SinI GGWCC 2 cut(s) 59, 100
SmiI ATTTAAAT 1 cut(s) 265
Sse9I AATT 4 cut(s) 49, 266, 369, 814
SsiI CCGC 1 cut(s) 793
SspI AATATT 3 cut(s) 607, 657, 775
SspMI CTAG 5 cut(s) 113, 162, 392, 522, 779
StyD4I CCNGG 4 cut(s) 154, 398, 446, 757
StyI CCWWGG 1 cut(s) 132
SwaI ATTTAAAT 1 cut(s) 265
TaaI ACNGT 1 cut(s) 680
TaqI TCGA 3 cut(s) 169, 438, 491
TaqII GACCGA 1 cut(s) 451
TasI AATT 4 cut(s) 49, 266, 369, 814
TatI WGTACW 1 cut(s) 185
TfiI GAWTC 2 cut(s) 66, 634
Tru1I TTAA 7 cut(s) 48, 264, 528, 587, 603, 669, 732
Tru9I TTAA 7 cut(s) 48, 264, 528, 587, 603, 669, 732
TscAI CASTG 3 cut(s) 281, 557, 697
TseFI GTSAC 3 cut(s) 331, 596, 787
Tsp45I GTSAC 3 cut(s) 331, 596, 787
TspDTI ATGAA 6 cut(s) 17, 26, 306, 406, 530, 608
TspGWI ACGGA 2 cut(s) 410, 818
TspRI CASTG 3 cut(s) 281, 557, 697
VneI GTGCAC 1 cut(s) 688
VpaK11BI GGWCC 2 cut(s) 59, 100
VspI ATTAAT 1 cut(s) 48
XapI RAATTY 2 cut(s) 266, 369
XbaI TCTAGA 4 cut(s) 161, 391, 521, 778
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XspI CTAG 5 cut(s) 113, 162, 392, 522, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.