Rmu_sc0008002.1_g000008

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008002.1
OG0000619
Physical Location & Seq
Reverse (-)
25716 .. 26093
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008002.1_g000008.1.cds

Sequence Viewer

Length: 378 bp
atgacaagtgtgaaggttgaaattggttttcagaacgcttttgcggtgtcttacaagactgtttggaaacccaatgggatgattttgagattaggagggttgtgcttgttttggaaggtagtgttggaggtggcacttggtacttattatgataatcatattgatgtcttgatgggtaatgtcaatgacagcaatcgatggaggtttacgggtttgtatggttttccaaaagtggaacaaaggcatcttacttgggaactaattaccaagttagggcacaacaattacagaccgtggttgcttgggggagacgttaatgagattctttgtggtagcgagaaggagggcggtccccctcgttgtctgaggcaaatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

125

Amino Acids

14.32

Weight (kDa)

8.84

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 348
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 1 cut(s) 20
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
Alw26I GTCTC 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 350
AvaII GGWCC 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 279
BccI CCATC 2 cut(s) 166, 192
BcoDI GTCTC 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 352
BmsI GCATC 1 cut(s) 253
Bsa29I ATCGAT 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 273
BseCI ATCGAT 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMII CTCAG 1 cut(s) 356
BseSI GKGCMC 1 cut(s) 279
BshVI ATCGAT 1 cut(s) 196
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 303
BsmBI CGTCTC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 279
BspACI CCGC 2 cut(s) 44, 348
BspCNI CTCAG 1 cut(s) 357
BspDI ATCGAT 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 293
Bst4CI ACNGT 2 cut(s) 61, 294
BstDEI CTNAG 1 cut(s) 365
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 303
BstSLI GKGCMC 1 cut(s) 279
Bsu15I ATCGAT 1 cut(s) 196
BsuTUI ATCGAT 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 350
ClaI ATCGAT 1 cut(s) 196
Csp6I GTAC 1 cut(s) 141
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 350
Esp3I CGTCTC 1 cut(s) 303
FaiI YATR 3 cut(s) 150, 159, 219
FaqI GGGAC 1 cut(s) 336
FokI GGATG 1 cut(s) 91
HinfI GANTC 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 2 cut(s) 33, 366
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 3 cut(s) 7, 109, 334
HpyCH4III ACNGT 2 cut(s) 61, 294
HpyCH4IV ACGT 1 cut(s) 312
HpyF3I CTNAG 1 cut(s) 365
HpySE526I ACGT 1 cut(s) 312
LweI GCATC 1 cut(s) 253
MaeII ACGT 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 3 cut(s) 21, 261, 283
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 6 cut(s) 89, 121, 195, 337, 360, 366
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 162
NlaIV GGNNCC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 350
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 315
Sau96I GGNCC 1 cut(s) 350
SduI GDGCHC 1 cut(s) 279
SetI ASST 5 cut(s) 18, 120, 132, 206, 315
SfaNI GCATC 1 cut(s) 253
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 3 cut(s) 21, 261, 283
SsiI CCGC 2 cut(s) 44, 348
TaaI ACNGT 2 cut(s) 61, 294
TaiI ACGT 1 cut(s) 315
TaqI TCGA 1 cut(s) 196
TasI AATT 3 cut(s) 21, 261, 283
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.