Rmu_sc0013925.1_g000004

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013925.1
OG0000619
Physical Location & Seq
Forward (+)
5762 .. 6721
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013925.1_g000004.1.cds

Sequence Viewer

Length: 960 bp
atggtggggattcgtatccagctggggtggcagaatgcgttcgcggttccgtgtaaattcaagcaaaaaaagaatgggaagggtgtgagtaggtccggaggtttgtgtctcatgtggaataatgatgtgcctatttcattacgaaattattcaaataatcatattgatgttttcgtgggtaaggactctgacccgaagcggtggaggttcacgggcatttacggttttcccaaggttgaggatcggcaccatacctggacattgttaaaaaccctaggcctgcagtgctctgtgccttgggttattggtggagattttaatgagattctgtggaatagtgagaaagaaggaggccctgctaggtgtgaacgacagatggaggggtttcgagagtttgtggaactcttctccctcaaagaattatcctatacaggaccctgctttacttggagagggaaacgtggaggcgaatggataaaggtccgactagatcgttatcttgttacgagtgggtggtctgatttattcccagtttcaagagttctccatcaaagtccaaataaatctgatcacctcctaataactatggaggtgagggagtgtagtccaaaacggagaaagaagcggaaaaagaggttcagattcaaagaactctggctccgagatgaagagtgcagtaagtttgtcgagcagggttggagttggtctggtggttctgacccgttctctagggtttgtgggaagatatgtgaaattcgccgagtcttacaggattggagtgaagtgaaatttgggtccctgcgaaataatattagcgaaattcgggaccagttgggtgcattctacgacgcctccttctcttcacctccagaggaagctagaatcttactaaagaagaaacttgatgaacttctaaagcttgaacaagatttttggagtcaaagggctaaagtgttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

319

Amino Acids

37.33

Weight (kDa)

9.56

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 246
AccII CGCG 1 cut(s) 44
AccIII TCCGGA 1 cut(s) 95
AciI CCGC 3 cut(s) 44, 199, 625
AclWI GGATC 1 cut(s) 249
AcsI RAATTY 4 cut(s) 56, 753, 788, 819
AcyI GRCGYC 1 cut(s) 849
AgsI TTSAA 5 cut(s) 61, 153, 537, 646, 923
AjnI CCWGG 1 cut(s) 254
AjuI GAANNNNNNNTTGG 2 cut(s) 774, 806
AloI GAACNNNNNNTCC 2 cut(s) 642, 674
AluBI AGCT 3 cut(s) 22, 878, 919
AluI AGCT 3 cut(s) 22, 878, 919
Alw21I GWGCWC 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 249
Aor13HI TCCGGA 1 cut(s) 95
AoxI GGCC 2 cut(s) 277, 352
ApoI RAATTY 4 cut(s) 56, 753, 788, 819
Asp700I GAANNNNTTC 2 cut(s) 38, 148
AspA2I CCTAGG 1 cut(s) 274
AspS9I GGNCC 6 cut(s) 93, 353, 434, 481, 795, 826
AsuHPI GGTGA 3 cut(s) 563, 604, 855
AvaII GGWCC 5 cut(s) 93, 434, 481, 795, 826
AvrII CCTAGG 1 cut(s) 274
BanI GGYRCC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 290
BccI CCATC 2 cut(s) 370, 555
BciT130I CCWGG 1 cut(s) 256
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 568
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 5 cut(s) 275, 360, 488, 729, 879
BfmI CTRYAG 1 cut(s) 281
BfuI GTATCC 1 cut(s) 26
BlnI CCTAGG 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 5 cut(s) 93, 434, 481, 795, 826
BmgT120I GGNCC 6 cut(s) 93, 353, 434, 481, 795, 826
BmiI GGNNCC 7 cut(s) 48, 248, 436, 659, 796, 797, 827
BmrFI CCNGG 1 cut(s) 256
BmrI ACTGGG 1 cut(s) 524
BmuI ACTGGG 1 cut(s) 524
BpmI CTGGAG 1 cut(s) 852
BsaBI GATNNNNATC 2 cut(s) 14, 495
BsaHI GRCGYC 1 cut(s) 849
BsaJI CCNNGG 3 cut(s) 231, 274, 296
BsaWI WCCGGW 1 cut(s) 95
BsaXI ACNNNNNCTCC 4 cut(s) 642, 672, 836, 866
Bse1I ACTGG 2 cut(s) 530, 829
Bse8I GATNNNNATC 2 cut(s) 14, 495
BseAI TCCGGA 1 cut(s) 95
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 3 cut(s) 231, 274, 296
BseJI GATNNNNATC 2 cut(s) 14, 495
BseNI ACTGG 2 cut(s) 530, 829
BseYI CCCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 694
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 2 cut(s) 279, 354
BshNI GGYRCC 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 290
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 2 cut(s) 781, 839
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 2 cut(s) 781, 839
BsmI GAATGC 2 cut(s) 40, 839
BsnI GGCC 2 cut(s) 279, 354
Bsp1286I GDGCHC 1 cut(s) 290
Bsp13I TCCGGA 1 cut(s) 95
Bsp143I GATC 3 cut(s) 241, 490, 568
BspACI CCGC 3 cut(s) 44, 199, 625
BspANI GGCC 2 cut(s) 279, 354
BspEI TCCGGA 1 cut(s) 95
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 7 cut(s) 48, 248, 436, 659, 796, 797, 827
BspMAI CTGCAG 1 cut(s) 285
BspPI GGATC 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 246
BsrI ACTGG 2 cut(s) 530, 829
BssECI CCNNGG 3 cut(s) 231, 274, 296
BssMI GATC 3 cut(s) 241, 490, 568
BssNI GRCGYC 1 cut(s) 849
BssT1I CCWWGG 3 cut(s) 231, 274, 296
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 224
Bst6I CTCTTC 3 cut(s) 410, 663, 865
BstACI GRCGYC 1 cut(s) 849
BstC8I GCNNGC 1 cut(s) 281
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 3 cut(s) 244, 493, 571
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 3 cut(s) 241, 490, 568
BstMWI GCNNNNNNNGC 2 cut(s) 28, 285
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 281
BstUI CGCG 1 cut(s) 44
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 2 cut(s) 279, 354
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 281
Cfr13I GGNCC 6 cut(s) 93, 353, 434, 481, 795, 826
CseI GACGC 1 cut(s) 857
CviAII CATG 1 cut(s) 112
CviJI RGCY 7 cut(s) 22, 279, 354, 658, 878, 919, 947
CviKI_1 RGCY 7 cut(s) 22, 279, 354, 658, 878, 919, 947
DpnI GATC 3 cut(s) 243, 492, 570
DpnII GATC 3 cut(s) 241, 490, 568
Eam1104I CTCTTC 3 cut(s) 410, 663, 865
EarI CTCTTC 3 cut(s) 410, 663, 865
Eco130I CCWWGG 3 cut(s) 231, 274, 296
Eco147I AGGCCT 1 cut(s) 279
Eco47I GGWCC 5 cut(s) 93, 434, 481, 795, 826
EcoO109I RGGNCCY 3 cut(s) 353, 434, 795
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 3 cut(s) 231, 274, 296
ErhI CCWWGG 3 cut(s) 231, 274, 296
FaeI CATG 1 cut(s) 115
FaiI YATR 6 cut(s) 113, 162, 252, 429, 587, 748
FaqI GGGAC 2 cut(s) 781, 839
FatI CATG 1 cut(s) 111
FbaI TGATCA 1 cut(s) 568
FspBI CTAG 5 cut(s) 275, 360, 488, 729, 879
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 852
HaeIII GGCC 2 cut(s) 279, 354
HapII CCGG 1 cut(s) 96
HgaI GACGC 1 cut(s) 857
Hin1I GRCGYC 1 cut(s) 849
Hin1II CATG 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 917
HinfI GANTC 7 cut(s) 10, 185, 325, 642, 762, 882, 937
HpaII CCGG 1 cut(s) 96
HphI GGTGA 3 cut(s) 563, 604, 855
Hpy166II GTNNAC 2 cut(s) 210, 368
Hpy188I TCNGA 7 cut(s) 190, 485, 520, 568, 641, 662, 718
Hpy188III TCNNGA 5 cut(s) 96, 389, 537, 824, 869
Hpy8I GTNNAC 2 cut(s) 210, 368
Hpy99I CGWCG 1 cut(s) 851
HpyAV CCTTC 3 cut(s) 73, 341, 865
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 3 cut(s) 283, 675, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 285
HpySE526I ACGT 1 cut(s) 460
Hsp92I GRCGYC 1 cut(s) 849
Hsp92II CATG 1 cut(s) 115
KflI GGGWCCC 1 cut(s) 795
Kpn2I TCCGGA 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 3 cut(s) 241, 490, 568
LmnI GCTCC 1 cut(s) 663
MaeI CTAG 5 cut(s) 275, 360, 488, 729, 879
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 1 cut(s) 502
MalI GATC 3 cut(s) 243, 492, 570
MboI GATC 3 cut(s) 241, 490, 568
MboII GAAGA 5 cut(s) 397, 680, 754, 852, 907
MhlI GDGCHC 1 cut(s) 290
MluCI AATT 6 cut(s) 56, 145, 419, 753, 788, 819
MlyI GAGTC 3 cut(s) 179, 771, 946
MmeI TCCRAC 2 cut(s) 508, 677
MroI TCCGGA 1 cut(s) 95
MroXI GAANNNNTTC 2 cut(s) 38, 148
MseI TTAA 2 cut(s) 266, 318
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 22
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 256
Mva1269I GAATGC 2 cut(s) 40, 839
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 28, 285
NdeII GATC 3 cut(s) 241, 490, 568
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 7 cut(s) 48, 248, 436, 659, 796, 797, 827
NmeAIII GCCGAG 1 cut(s) 785
PceI AGGCCT 1 cut(s) 279
PctI GAATGC 2 cut(s) 40, 839
PdmI GAANNNNTTC 2 cut(s) 38, 148
PfeI GAWTC 4 cut(s) 10, 325, 642, 882
PleI GAGTC 3 cut(s) 179, 770, 945
PpsI GAGTC 3 cut(s) 179, 770, 945
PpuMI RGGWCCY 2 cut(s) 434, 795
Psp5II RGGWCCY 2 cut(s) 434, 795
Psp6I CCWGG 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 7 cut(s) 48, 248, 436, 659, 796, 797, 827
PspPI GGNCC 6 cut(s) 93, 353, 434, 481, 795, 826
PspPPI RGGWCCY 2 cut(s) 434, 795
PstI CTGCAG 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 2 cut(s) 266, 318
Sau3AI GATC 3 cut(s) 241, 490, 568
Sau96I GGNCC 6 cut(s) 93, 353, 434, 481, 795, 826
SchI GAGTC 3 cut(s) 179, 771, 946
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 1 cut(s) 290
SfcI CTRYAG 1 cut(s) 281
SinI GGWCC 5 cut(s) 93, 434, 481, 795, 826
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 6 cut(s) 56, 145, 419, 753, 788, 819
SseBI AGGCCT 1 cut(s) 279
SsiI CCGC 3 cut(s) 44, 199, 625
SspI AATATT 1 cut(s) 811
SspMI CTAG 5 cut(s) 275, 360, 488, 729, 879
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 254
StyI CCWWGG 3 cut(s) 231, 274, 296
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 1 cut(s) 463
TaqI TCGA 2 cut(s) 388, 687
TasI AATT 6 cut(s) 56, 145, 419, 753, 788, 819
TfiI GAWTC 4 cut(s) 10, 325, 642, 882
Tru1I TTAA 2 cut(s) 266, 318
Tru9I TTAA 2 cut(s) 266, 318
TscAI CASTG 1 cut(s) 290
TspDTI ATGAA 3 cut(s) 126, 681, 921
TspGWI ACGGA 2 cut(s) 39, 628
TspRI CASTG 1 cut(s) 290
VpaK11BI GGWCC 5 cut(s) 93, 434, 481, 795, 826
XapI RAATTY 4 cut(s) 56, 753, 788, 819
XmaJI CCTAGG 1 cut(s) 274
XmnI GAANNNNTTC 2 cut(s) 38, 148
XspI CTAG 5 cut(s) 275, 360, 488, 729, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.