Rmu_sc0001208.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001208.1
OG0000619
Physical Location & Seq
Forward (+)
12003 .. 12755
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001208.1_g000001.1.cds

Sequence Viewer

Length: 648 bp
atgaaggcaaggattaggaacccttcgcttagcaaagaaatgctgaaagggaaaatggagaaagaaagggggaagactgagatgattgctggtgaaggccaagggattgggaacccttggacggttcaaggacttaaagggttggttcccctcaactttcccagtgttatttttcttagcgagactcactgcagggttgcagagatgacttgtatccgacatcaacttgggtggtcgagtgttttttctgttccttgtatttttaagaaaaagaagaatggtaaaggggttagtagaagtggtggactgagcttgctttggaccgaggaggttgagttgttgttgagaacttttttggataatcataattatgtgttgattggaaaggcggatgatcctaataggtggaggtttaacggggtttatggttatcctaaagttgaagatcgtcactcagaggaataccaccattctgggggaagacaaagtcaagcatatttgatgctgttaggactcttgaggttcccatctgatccctgggatggcatcactaaaagcctcactgctcaccaaggtttaggtagtttaaggaatgattgcagtaacagagtttgttcaaatgctgaatctgatgctaaaagcctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

215

Amino Acids

24.11

Weight (kDa)

9.32

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 389
AclWI GGATC 2 cut(s) 389, 527
AfiI CCNNNNNNNGG 3 cut(s) 121, 475, 542
AgsI TTSAA 3 cut(s) 128, 443, 618
AjnI CCWGG 1 cut(s) 536
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 2 cut(s) 389, 527
AoxI GGCC 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 321
AsuHPI GGTGA 2 cut(s) 104, 560
AvaII GGWCC 1 cut(s) 321
BbsI GAAGAC 2 cut(s) 80, 487
BccI CCATC 2 cut(s) 535, 536
BciT130I CCWGG 1 cut(s) 538
BciVI GTATCC 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 176
BfmI CTRYAG 2 cut(s) 190, 644
BfuI GTATCC 1 cut(s) 224
BlpI GCTNAGC 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 538
Bme18I GGWCC 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 4 cut(s) 20, 113, 147, 524
BmrFI CCNGG 1 cut(s) 538
BmrI ACTGGG 1 cut(s) 156
BmsI GCATC 3 cut(s) 492, 555, 622
BmuI ACTGGG 1 cut(s) 156
BpiI GAAGAC 2 cut(s) 80, 487
Bpu1102I GCTNAGC 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 538
BsaJI CCNNGG 6 cut(s) 100, 116, 324, 536, 537, 571
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 475, 542
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 538
BseDI CCNNGG 6 cut(s) 100, 116, 324, 536, 537, 571
BseGI GGATG 2 cut(s) 397, 547
BseLI CCNNNNNNNGG 3 cut(s) 121, 475, 542
BseMII CTCAG 3 cut(s) 69, 299, 468
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 341
BshFI GGCC 1 cut(s) 99
BslI CCNNNNNNNGG 3 cut(s) 121, 475, 542
BsmAI GTCTC 1 cut(s) 176
BsnI GGCC 1 cut(s) 99
Bsp143I GATC 3 cut(s) 394, 445, 532
Bsp1720I GCTNAGC 1 cut(s) 29
BspACI CCGC 1 cut(s) 389
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 3 cut(s) 70, 300, 467
BspLI GGNNCC 4 cut(s) 20, 113, 147, 524
BspMAI CTGCAG 1 cut(s) 194
BspPI GGATC 2 cut(s) 389, 527
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 6 cut(s) 100, 116, 324, 536, 537, 571
BssMI GATC 3 cut(s) 394, 445, 532
BssT1I CCWWGG 3 cut(s) 100, 116, 571
Bst2UI CCWGG 1 cut(s) 538
Bst4CI ACNGT 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 5 cut(s) 29, 78, 176, 308, 454
BstF5I GGATG 2 cut(s) 397, 547
BstKTI GATC 3 cut(s) 397, 448, 535
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 3 cut(s) 394, 445, 532
BstNI CCWGG 1 cut(s) 538
BstSCI CCNGG 1 cut(s) 536
BstSFI CTRYAG 2 cut(s) 190, 644
BstV2I GAAGAC 2 cut(s) 80, 487
BstXI CCANNNNNNTGG 2 cut(s) 107, 473
BsuI GTATCC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 2 cut(s) 397, 547
BtsI GCAGTG 2 cut(s) 187, 561
BtsIMutI CAGTG 3 cut(s) 169, 187, 561
Cac8I GCNNGC 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 321
CspCI CAANNNNNGTGG 2 cut(s) 212, 247
CviJI RGCY 4 cut(s) 99, 312, 558, 642
CviKI_1 RGCY 4 cut(s) 99, 312, 558, 642
DdeI CTNAG 5 cut(s) 29, 78, 176, 308, 454
DpnI GATC 3 cut(s) 396, 447, 534
DpnII GATC 3 cut(s) 394, 445, 532
EciI GGCGGA 1 cut(s) 404
Eco130I CCWWGG 3 cut(s) 100, 116, 571
Eco47I GGWCC 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 536
EcoT14I CCWWGG 3 cut(s) 100, 116, 571
ErhI CCWWGG 3 cut(s) 100, 116, 571
FaiI YATR 4 cut(s) 366, 372, 426, 496
FokI GGATG 2 cut(s) 404, 554
HaeIII GGCC 1 cut(s) 99
HinfI GANTC 3 cut(s) 184, 513, 626
HphI GGTGA 2 cut(s) 104, 560
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 4 cut(s) 218, 457, 532, 631
Hpy188III TCNNGA 1 cut(s) 517
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 33, 89
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 192, 200, 600
HpyF3I CTNAG 5 cut(s) 29, 78, 176, 308, 454
Kzo9I GATC 3 cut(s) 394, 445, 532
LpnPI CCDG 6 cut(s) 75, 175, 178, 459, 523, 550
LweI GCATC 3 cut(s) 492, 555, 622
MaeIII GTNAC 2 cut(s) 449, 602
MalI GATC 3 cut(s) 396, 447, 534
MboI GATC 3 cut(s) 394, 445, 532
MboII GAAGA 4 cut(s) 85, 286, 455, 492
MluCI AATT 1 cut(s) 367
MlyI GAGTC 2 cut(s) 178, 507
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 7 cut(s) 161, 319, 322, 402, 451, 513, 569
MseI TTAA 4 cut(s) 135, 264, 414, 587
MslI CAYNNNNRTG 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 538
MvaI CCWGG 1 cut(s) 538
NdeII GATC 3 cut(s) 394, 445, 532
NlaIV GGNNCC 4 cut(s) 20, 113, 147, 524
NmuCI GTSAC 1 cut(s) 449
PasI CCCWGGG 1 cut(s) 537
PfeI GAWTC 1 cut(s) 626
PflFI GACNNNGTC 1 cut(s) 486
PleI GAGTC 2 cut(s) 178, 507
PpsI GAGTC 2 cut(s) 178, 507
Psp6I CCWGG 1 cut(s) 536
PspGI CCWGG 1 cut(s) 536
PspN4I GGNNCC 4 cut(s) 20, 113, 147, 524
PspPI GGNCC 1 cut(s) 321
PstI CTGCAG 1 cut(s) 194
PsyI GACNNNGTC 1 cut(s) 486
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 4 cut(s) 135, 264, 414, 587
Sau3AI GATC 3 cut(s) 394, 445, 532
Sau96I GGNCC 1 cut(s) 321
SchI GAGTC 2 cut(s) 178, 507
ScrFI CCNGG 1 cut(s) 538
SetI ASST 7 cut(s) 314, 333, 407, 413, 524, 577, 583
SfaNI GCATC 3 cut(s) 492, 555, 622
SfcI CTRYAG 2 cut(s) 190, 644
SinI GGWCC 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 517
SmoI CTYRAG 1 cut(s) 517
Sse9I AATT 1 cut(s) 367
SsiI CCGC 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 536
StyI CCWWGG 3 cut(s) 100, 116, 571
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 236
TaqII GACCGA 1 cut(s) 338
TasI AATT 1 cut(s) 367
TfiI GAWTC 1 cut(s) 626
Tru1I TTAA 4 cut(s) 135, 264, 414, 587
Tru9I TTAA 4 cut(s) 135, 264, 414, 587
TscAI CASTG 3 cut(s) 169, 194, 568
TseFI GTSAC 1 cut(s) 449
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 169, 194, 568
Tth111I GACNNNGTC 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 321
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.