Rh7DG241900

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000619
Physical Location & Seq
Reverse (-)
24913343 .. 24936761
23419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG241900.1

Sequence Viewer

Length: 477 bp
ATGGATGACTTGGGGCAAGTTGCATGGCTGTTTACGGGCATTTATGGGGAACCACGGATTGAAGATCGACACCGCACTTGGTCACGTCTTAAGCGTGTCGAGCAATCTGGTGACAATCTTCCTTGGATACTTGGGGGAGATTTTAATGAAATTTGCTCAGCTGCGGAGAAGGTTGGCGGTCCTAGATGTCCCATGGCTCAGATGGGCGGCTTTTGTGAGGCACTTCATTATTGCTCCCTTACTGATATGCATTTTGCTGGCCCTAAATTCACATGGACTGGAACTAGATATGGTGTACAGATAAAGGAATGTTTGGATCGTTTTGTTGCAACTCATGCATGGACTCAACTCTTCTCGGCTTCTACGGTCTTACATCTTCACCCTAGCAAGTCTGATCATCTCCCACTGTTACTGGAGGTTAGAAAGTTGCGCAAAAGGAGAAAGATCGAGGAAGAAAAAGTCTCGTTTCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

158

Amino Acids

18.12

Weight (kDa)

8.31

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 29 - 133 6.4e-07 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 431
AciI CCGC 4 cut(s) 73, 164, 177, 207
AclWI GGATC 1 cut(s) 324
AcsI RAATTY 2 cut(s) 150, 266
AfaI GTAC 1 cut(s) 297
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 2 cut(s) 62, 470
AjiI CACGTC 1 cut(s) 86
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 466
AlwI GGATC 1 cut(s) 324
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 2 cut(s) 150, 266
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 2 cut(s) 179, 260
AsuHPI GGTGA 2 cut(s) 122, 371
AvaII GGWCC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 196
BciVI GTATCC 1 cut(s) 120
BclI TGATCA 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 3 cut(s) 183, 285, 384
BfrI CTTAAG 1 cut(s) 89
BfuI GTATCC 1 cut(s) 120
BisI GCNGC 2 cut(s) 162, 208
BlpI GCTNAGC 1 cut(s) 157
BlsI GCNGC 2 cut(s) 163, 209
Bme18I GGWCC 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 86
BmgT120I GGNCC 2 cut(s) 179, 260
BmiI GGNNCC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 434
Bpu1102I GCTNAGC 1 cut(s) 157
BsaJI CCNNGG 3 cut(s) 53, 122, 192
Bse1I ACTGG 2 cut(s) 283, 417
BseDI CCNNGG 3 cut(s) 53, 122, 192
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 2 cut(s) 171, 212
BseNI ACTGG 2 cut(s) 283, 417
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 1 cut(s) 261
BslFI GGGAC 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 466
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 1 cut(s) 261
Bsp1407I TGTACA 1 cut(s) 295
Bsp143I GATC 4 cut(s) 64, 316, 394, 444
Bsp1720I GCTNAGC 1 cut(s) 157
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 4 cut(s) 73, 164, 177, 207
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 2 cut(s) 170, 211
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 1 cut(s) 324
BspTI CTTAAG 1 cut(s) 89
BsrGI TGTACA 1 cut(s) 295
BsrI ACTGG 2 cut(s) 283, 417
BssECI CCNNGG 3 cut(s) 53, 122, 192
BssMI GATC 4 cut(s) 64, 316, 394, 444
BssT1I CCWWGG 2 cut(s) 122, 192
Bst4CI ACNGT 2 cut(s) 367, 408
Bst6I CTCTTC 1 cut(s) 356
BstAFI CTTAAG 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 335
BstAUI TGTACA 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 157, 198
BstDSI CCRYGG 2 cut(s) 53, 192
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 4 cut(s) 67, 319, 397, 447
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 4 cut(s) 64, 316, 394, 444
BstMWI GCNNNNNNNGC 2 cut(s) 100, 335
BstV1I GCAGC 1 cut(s) 148
BsuI GTATCC 1 cut(s) 120
BsuRI GGCC 1 cut(s) 261
BtgI CCRYGG 2 cut(s) 53, 192
BtrI CACGTC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 404
Cac8I GCNNGC 1 cut(s) 259
CfoI GCGC 1 cut(s) 432
Cfr13I GGNCC 2 cut(s) 179, 260
Csp6I GTAC 1 cut(s) 296
CviAII CATG 5 cut(s) 24, 193, 273, 335, 339
CviJI RGCY 6 cut(s) 28, 161, 197, 210, 261, 359
CviKI_1 RGCY 6 cut(s) 28, 161, 197, 210, 261, 359
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 2 cut(s) 157, 198
DpnI GATC 4 cut(s) 66, 318, 396, 446
DpnII GATC 4 cut(s) 64, 316, 394, 444
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco130I CCWWGG 2 cut(s) 122, 192
Eco47I GGWCC 1 cut(s) 179
EcoT14I CCWWGG 2 cut(s) 122, 192
EcoT22I ATGCAT 2 cut(s) 252, 340
ErhI CCWWGG 2 cut(s) 122, 192
FaeI CATG 5 cut(s) 27, 196, 276, 338, 342
FaiI YATR 8 cut(s) 25, 45, 194, 248, 274, 291, 336, 340
FaqI GGGAC 1 cut(s) 174
FatI CATG 5 cut(s) 23, 192, 272, 334, 338
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 2 cut(s) 162, 208
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 162, 208
FspBI CTAG 3 cut(s) 183, 285, 384
FspI TGCGCA 1 cut(s) 431
GlaI GCGC 1 cut(s) 431
GluI GCNGC 2 cut(s) 162, 208
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 1 cut(s) 261
HhaI GCGC 1 cut(s) 432
Hin1II CATG 5 cut(s) 27, 196, 276, 338, 342
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HinfI GANTC 1 cut(s) 343
HphI GGTGA 2 cut(s) 122, 371
Hpy166II GTNNAC 2 cut(s) 33, 296
Hpy188I TCNGA 2 cut(s) 201, 394
Hpy8I GTNNAC 2 cut(s) 33, 296
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 367, 408
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 4 cut(s) 23, 250, 329, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 335
HpyF3I CTNAG 2 cut(s) 157, 198
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 5 cut(s) 27, 196, 276, 338, 342
HspAI GCGC 1 cut(s) 430
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 4 cut(s) 64, 316, 394, 444
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 4 cut(s) 93, 243, 264, 398
Lsp1109I GCAGC 1 cut(s) 148
MaeI CTAG 3 cut(s) 183, 285, 384
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 3 cut(s) 81, 110, 408
MalI GATC 4 cut(s) 66, 318, 396, 446
MboI GATC 4 cut(s) 64, 316, 394, 444
MboII GAAGA 5 cut(s) 74, 110, 343, 368, 464
MluCI AATT 2 cut(s) 150, 266
MlyI GAGTC 1 cut(s) 337
MnlI CCTC 3 cut(s) 211, 409, 442
Mph1103I ATGCAT 2 cut(s) 252, 340
MseI TTAA 2 cut(s) 90, 144
MspA1I CMGCKG 1 cut(s) 161
MspCI CTTAAG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 100, 335
NcoI CCATGG 1 cut(s) 192
NdeII GATC 4 cut(s) 64, 316, 394, 444
NlaIII CATG 5 cut(s) 27, 196, 276, 338, 342
NlaIV GGNNCC 1 cut(s) 51
NmeAIII GCCGAG 1 cut(s) 335
NmuCI GTSAC 2 cut(s) 81, 110
NsbI TGCGCA 1 cut(s) 431
NsiI ATGCAT 2 cut(s) 252, 340
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PkrI GCNGC 2 cut(s) 163, 209
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 2 cut(s) 179, 260
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 90, 144
SatI GCNGC 2 cut(s) 162, 208
Sau3AI GATC 4 cut(s) 64, 316, 394, 444
Sau96I GGNCC 2 cut(s) 179, 260
SchI GAGTC 1 cut(s) 337
SetI ASST 4 cut(s) 88, 163, 174, 420
SinI GGWCC 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 2 cut(s) 150, 266
SsiI CCGC 4 cut(s) 73, 164, 177, 207
SspMI CTAG 3 cut(s) 183, 285, 384
StyI CCWWGG 2 cut(s) 122, 192
TaaI ACNGT 2 cut(s) 367, 408
TaiI ACGT 1 cut(s) 88
TaqI TCGA 3 cut(s) 67, 99, 447
TasI AATT 2 cut(s) 150, 266
TatI WGTACW 1 cut(s) 295
TauI GCSGC 1 cut(s) 210
Tru1I TTAA 2 cut(s) 90, 144
Tru9I TTAA 2 cut(s) 90, 144
TscAI CASTG 1 cut(s) 411
TseFI GTSAC 2 cut(s) 81, 110
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 2 cut(s) 81, 110
TspDTI ATGAA 2 cut(s) 162, 215
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 1 cut(s) 411
Vha464I CTTAAG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 2 cut(s) 150, 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XspI CTAG 3 cut(s) 183, 285, 384
Zsp2I ATGCAT 2 cut(s) 252, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.