Rorug07G0210600

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000619
Physical Location & Seq
Forward (+)
18597719 .. 18599547
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0210600.1

Sequence Viewer

Length: 1623 bp
ATGCTAGTTGGGTCTCAAAGCGTGAACCTGTTTCAGGCGACAAACCGGAGCTTCAAGAACTACACGTCACCGTTGAACCCCTTAACAAGAACTCCGTCTTCTTGTTCCTATTCAGCTTCTGCCTCGAATTGTCTTACTATTAAGTCATCGGCTGCAACCTCAATCTCAAAAACAGAGTTGACTCTCGCCAATCTCGACAAGCTGCTCCCAAAGTCGGCTCCACCCCAACCTCCCCAGCTAGACCCGCAACCCGGGATTGAAGATCGGAAAACAAAAAGGCCTACGGAAAACAAGGGAAAGGGATTTCTAGAAGGGCTCAATCTCGCCAGGCTTTGGCCGCAGGTGAAGGCAGCGGCGGAGGAAATGTCTCCGAGGCATTTGAAGACCCTCCGGAGGCTTCTGTCCAAGACAGCAGAGTATTCTCCCCGGAATAGTTTGAGCTCCAAGTGGAGGGAGTATCACGGTAGCAAAAACTGGGCCGGACTACTTGACCCTCTTGATGAGAATCTCCGGCGAGAGGTCGTCAGATACGGTGAGTTCATCCAGGCGGCTTATCAATCATTTCACTCGAATCCGGCTATGTCGGTGGAGGAAACTCAGATGCCACGTAACGTGGCCTTGCCTGATAGGTCATATAAGGTAACCAAAAGTCTTTATGCGACGTCAGCAATCGGGTTGCCTGACTGGGTCGACGATGTGGCCCCGGATCTCGGGTGGATGACCCAGCGGTCGAGCTGGATCGGGTATGTGGCGGTCTGCGACGACAGGCGGGAGATTGCGCGGATGGGACGACGAGACATAGTCATCGCGCTCCGCGGAACCTCCACGTGTCTCGAGTGGGCCGAAAACATGAGGGCCCAACTCATTCAAATGCCCGCCACCGAAGAGGGTGGAGAGGAAGCACAGGCAAAGGTGGAGTGCGGGTTCCAAAGCCTCTACAAGACGCCCGGCGCCCACGTGCCGAGTCTATCAGAGTCCGTGGTCGAAGAAATCAAAAGATTGAAGGAGTTGTACAAAGGTGAGCAACTGAGCATAACCGTCACGGGCCACAGCCTCGGCGCAGCCATCGCCCTCTTAGTTGGTGACGAGCTTAAAACTTGCGCTGAGGATATGCCGCCCGTGGCGGTGTTCTCTTTCGGAGGACCCCGAGTAGGAAACAGAGGCTTCGCAAACCGAATGGAAGCAAAGAACGTGAAGGTCTTGCGGATCGTGAACTCCCAAGACTTGATCACAAGGGTTCCGGGCATCTTCATTGGGGAAGGAGTGCTAGAAGAGAAGCTCAAGAACTCGAAACTCGGAGACATGCTTGACAAGAATCTGCCCTTGGCTTACGCCCACGTGGGAACAGAGTTGAGGGTCGACACAAAAATGTCACCCTACTTGAAGCCCAACGCTGATGTGGCTTGCTGCCATGACTTGGAGGCATACTTGCATTTGGTGGATGGGTTCTTGGCGTCTAACTGTCCTTTTAGAAAGAATGCTAAGAGGAGTTTAGTAAGGTTGCTTCAAGATCAAGGATCTAATGTGAAAAAATTGTATATCAGTAAGGCAAACAACTTGAGTAGTTTGAATCTTGAAAGAGAGGGACTTATGGCTAGTTGTTTGCCTAGTCCCTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

540

Amino Acids

59.64

Weight (kDa)

8.96

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 268 - 416 1.9e-33 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
AasI GACNNNNNNGTC 1 cut(s) 727
AatII GACGTC 1 cut(s) 665
Acc36I ACCTGC 1 cut(s) 331
AccB1I GGYRCC 1 cut(s) 950
AccB7I CCANNNNNTGG 2 cut(s) 333, 1417
AccI GTMKAC 2 cut(s) 690, 1359
AccII CGCG 3 cut(s) 781, 809, 816
AccIII TCCGGA 1 cut(s) 390
AclWI GGATC 4 cut(s) 714, 746, 1214, 1525
AcoI YGGCCR 1 cut(s) 335
AcvI CACGTG 3 cut(s) 828, 958, 1339
AcyI GRCGYC 4 cut(s) 662, 944, 951, 1454
AfaI GTAC 1 cut(s) 1013
AflIII ACRYGT 2 cut(s) 63, 827
AjiI CACGTC 1 cut(s) 66
AjnI CCWGG 2 cut(s) 326, 543
AjuI GAANNNNNNNTTGG 2 cut(s) 1307, 1339
AloI GAACNNNNNNTCC 2 cut(s) 908, 940
AluBI AGCT 8 cut(s) 51, 116, 202, 238, 441, 735, 1090, 1279
AluI AGCT 8 cut(s) 51, 116, 202, 238, 441, 735, 1090, 1279
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 5 cut(s) 18, 372, 789, 836, 1293
AlwI GGATC 4 cut(s) 714, 746, 1214, 1525
AlwNI CAGNNNCTG 1 cut(s) 119
Ama87I CYCGRG 4 cut(s) 251, 710, 833, 1146
Aor13HI TCCGGA 1 cut(s) 390
AoxI GGCC 8 cut(s) 278, 335, 477, 615, 699, 840, 855, 1045
ApaI GGGCCC 1 cut(s) 859
ApeKI GCWGC 5 cut(s) 152, 202, 350, 1061, 1407
AspLEI GCGC 5 cut(s) 781, 811, 953, 1061, 1103
AspS9I GGNCC 7 cut(s) 477, 700, 840, 855, 856, 1045, 1142
AsuC2I CCSGG 6 cut(s) 252, 253, 427, 704, 948, 1242
AsuHPI GGTGA 6 cut(s) 60, 355, 545, 1031, 1094, 1365
AvaI CYCGRG 4 cut(s) 251, 710, 833, 1146
AvaII GGWCC 1 cut(s) 1142
BaeGI GKGCMC 1 cut(s) 859
BanI GGYRCC 1 cut(s) 950
BanII GRGCYC 3 cut(s) 318, 443, 859
BarI GAAGNNNNNNTAC 4 cut(s) 995, 1027, 1488, 1520
BbrPI CACGTG 3 cut(s) 828, 958, 1339
BbsI GAAGAC 2 cut(s) 90, 389
Bbv12I GWGCWC 1 cut(s) 443
BbvCI CCTCAGC 1 cut(s) 1104
BbvI GCAGC 5 cut(s) 139, 189, 362, 1073, 1394
BccI CCATC 3 cut(s) 778, 1073, 1436
BciT130I CCWGG 2 cut(s) 328, 545
BclI TGATCA 1 cut(s) 1227
BcnI CCSGG 6 cut(s) 252, 253, 427, 704, 948, 1242
BcoDI GTCTC 5 cut(s) 18, 372, 789, 836, 1293
BfaI CTAG 6 cut(s) 5, 239, 308, 1268, 1596, 1608
BfoI RGCGCY 1 cut(s) 954
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 9 cut(s) 153, 203, 338, 351, 354, 549, 1062, 1115, 1408
BlsI GCNGC 9 cut(s) 154, 204, 339, 352, 355, 550, 1063, 1116, 1409
Bme1390I CCNGG 8 cut(s) 252, 253, 328, 427, 545, 704, 948, 1242
Bme18I GGWCC 1 cut(s) 1142
BmeT110I CYCGRG 4 cut(s) 251, 710, 833, 1146
BmgBI CACGTC 1 cut(s) 66
BmgT120I GGNCC 7 cut(s) 477, 700, 840, 855, 856, 1045, 1142
BmiI GGNNCC 8 cut(s) 219, 702, 820, 857, 926, 952, 1144, 1239
BmrFI CCNGG 8 cut(s) 252, 253, 328, 427, 545, 704, 948, 1242
BmrI ACTGGG 2 cut(s) 484, 694
BmsI GCATC 2 cut(s) 591, 1254
BmuI ACTGGG 2 cut(s) 484, 694
BpiI GAAGAC 2 cut(s) 90, 389
Bpu10I CCTNAGC 1 cut(s) 1104
BpuEI CTTGAG 2 cut(s) 1265, 1579
BpuMI CCSGG 6 cut(s) 252, 253, 427, 704, 948, 1242
BsaAI YACGTR 4 cut(s) 608, 828, 958, 1339
BsaBI GATNNNNATC 1 cut(s) 504
BsaHI GRCGYC 4 cut(s) 662, 944, 951, 1454
BsaI GGTCTC 1 cut(s) 18
BsaJI CCNNGG 9 cut(s) 251, 371, 425, 702, 814, 978, 1054, 1119, 1323
BsaWI WCCGGW 2 cut(s) 45, 390
BsaXI ACNNNNNCTCC 6 cut(s) 76, 106, 350, 380, 908, 938
Bse1I ACTGG 2 cut(s) 479, 689
Bse8I GATNNNNATC 1 cut(s) 504
BseAI TCCGGA 1 cut(s) 390
BseBI CCWGG 2 cut(s) 328, 545
BseDI CCNNGG 9 cut(s) 251, 371, 425, 702, 814, 978, 1054, 1119, 1323
BseGI GGATG 4 cut(s) 540, 723, 789, 1447
BseJI GATNNNNATC 1 cut(s) 504
BseMII CTCAG 3 cut(s) 611, 1019, 1095
BseNI ACTGG 2 cut(s) 479, 689
BseRI GAGGAG 1 cut(s) 1501
BseSI GKGCMC 1 cut(s) 859
BseXI GCAGC 5 cut(s) 139, 189, 362, 1073, 1394
BseYI CCCAGC 2 cut(s) 234, 723
Bsh1236I CGCG 3 cut(s) 781, 809, 816
Bsh1285I CGRYCG 1 cut(s) 731
BshFI GGCC 8 cut(s) 280, 337, 479, 617, 701, 842, 857, 1047
BshNI GGYRCC 1 cut(s) 950
BsiEI CGRYCG 1 cut(s) 731
BsiHKAI GWGCWC 1 cut(s) 443
BsiHKCI CYCGRG 4 cut(s) 251, 710, 833, 1146
BslFI GGGAC 3 cut(s) 801, 1596, 1599
BsmAI GTCTC 5 cut(s) 18, 372, 789, 836, 1293
BsmFI GGGAC 3 cut(s) 801, 1596, 1599
BsmI GAATGC 1 cut(s) 1483
BsnI GGCC 8 cut(s) 280, 337, 479, 617, 701, 842, 857, 1047
Bso31I GGTCTC 1 cut(s) 18
BsoBI CYCGRG 4 cut(s) 251, 710, 833, 1146
Bsp120I GGGCCC 1 cut(s) 855
Bsp1286I GDGCHC 3 cut(s) 318, 443, 859
Bsp13I TCCGGA 1 cut(s) 390
Bsp1407I TGTACA 1 cut(s) 1011
Bsp143I GATC 7 cut(s) 262, 706, 738, 1206, 1227, 1510, 1517
BspANI GGCC 8 cut(s) 280, 337, 479, 617, 701, 842, 857, 1047
BspCNI CTCAG 3 cut(s) 610, 1020, 1096
BspEI TCCGGA 1 cut(s) 390
BspFNI CGCG 3 cut(s) 781, 809, 816
BspLI GGNNCC 8 cut(s) 219, 702, 820, 857, 926, 952, 1144, 1239
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 4 cut(s) 714, 746, 1214, 1525
BspT107I GGYRCC 1 cut(s) 950
BspTNI GGTCTC 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 1011
BsrI ACTGG 2 cut(s) 479, 689
BssECI CCNNGG 9 cut(s) 251, 371, 425, 702, 814, 978, 1054, 1119, 1323
BssMI GATC 7 cut(s) 262, 706, 738, 1206, 1227, 1510, 1517
BssNI GRCGYC 4 cut(s) 662, 944, 951, 1454
BssT1I CCWWGG 1 cut(s) 1323
Bst2UI CCWGG 2 cut(s) 328, 545
Bst4CI ACNGT 5 cut(s) 72, 464, 533, 1039, 1463
Bst6I CTCTTC 2 cut(s) 879, 1266
BstACI GRCGYC 4 cut(s) 662, 944, 951, 1454
BstAUI TGTACA 1 cut(s) 1011
BstBAI YACGTR 4 cut(s) 608, 828, 958, 1339
BstC8I GCNNGC 2 cut(s) 876, 1405
BstDEI CTNAG 5 cut(s) 597, 1028, 1075, 1104, 1482
BstDSI CCRYGG 3 cut(s) 814, 978, 1119
BstEII GGTNACC 1 cut(s) 640
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 4 cut(s) 540, 723, 789, 1447
BstFNI CGCG 3 cut(s) 781, 809, 816
BstH2I RGCGCY 1 cut(s) 954
BstHHI GCGC 5 cut(s) 781, 811, 953, 1061, 1103
BstKTI GATC 7 cut(s) 265, 709, 741, 1209, 1230, 1513, 1520
BstMAI GTCTC 5 cut(s) 18, 372, 789, 836, 1293
BstMBI GATC 7 cut(s) 262, 706, 738, 1206, 1227, 1510, 1517
BstMCI CGRYCG 1 cut(s) 731
BstMWI GCNNNNNNNGC 5 cut(s) 244, 337, 665, 1067, 1400
BstNI CCWGG 2 cut(s) 328, 545
BstNSI RCATGY 1 cut(s) 1306
BstPI GGTNACC 1 cut(s) 640
BstSCI CCNGG 8 cut(s) 250, 251, 326, 425, 543, 702, 946, 1240
BstSLI GKGCMC 1 cut(s) 859
BstUI CGCG 3 cut(s) 781, 809, 816
BstV1I GCAGC 5 cut(s) 139, 189, 362, 1073, 1394
BstV2I GAAGAC 2 cut(s) 90, 389
BstX2I RGATCY 2 cut(s) 706, 1517
BstYI RGATCY 2 cut(s) 706, 1517
BsuRI GGCC 8 cut(s) 280, 337, 479, 617, 701, 842, 857, 1047
BtgI CCRYGG 3 cut(s) 814, 978, 1119
BtgZI GCGATG 2 cut(s) 790, 1051
BtrI CACGTC 1 cut(s) 66
BtsCI GGATG 4 cut(s) 540, 723, 789, 1447
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 2 cut(s) 876, 1405
CaiI CAGNNNCTG 1 cut(s) 119
CfoI GCGC 5 cut(s) 781, 811, 953, 1061, 1103
Cfr13I GGNCC 7 cut(s) 477, 700, 840, 855, 856, 1045, 1142
Cfr42I CCGCGG 1 cut(s) 817
Cfr9I CCCGGG 1 cut(s) 251
CseI GACGC 2 cut(s) 952, 1443
Csp6I GTAC 1 cut(s) 1012
CviAII CATG 3 cut(s) 850, 1303, 1412
CviQI GTAC 1 cut(s) 1012
DdeI CTNAG 5 cut(s) 597, 1028, 1075, 1104, 1482
DinI GGCGCC 1 cut(s) 952
DpnI GATC 7 cut(s) 264, 708, 740, 1208, 1229, 1512, 1519
DpnII GATC 7 cut(s) 262, 706, 738, 1206, 1227, 1510, 1517
DrdI GACNNNNNNGTC 1 cut(s) 727
DseDI GACNNNNNNGTC 1 cut(s) 727
EaeI YGGCCR 1 cut(s) 335
Eam1104I CTCTTC 2 cut(s) 879, 1266
EarI CTCTTC 2 cut(s) 879, 1266
EciI GGCGGA 1 cut(s) 371
Ecl136II GAGCTC 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 1323
Eco147I AGGCCT 1 cut(s) 280
Eco24I GRGCYC 3 cut(s) 318, 443, 859
Eco31I GGTCTC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 1142
Eco53kI GAGCTC 1 cut(s) 441
Eco72I CACGTG 3 cut(s) 828, 958, 1339
Eco88I CYCGRG 4 cut(s) 251, 710, 833, 1146
Eco91I GGTNACC 1 cut(s) 640
EcoICRI GAGCTC 1 cut(s) 441
EcoNI CCTNNNNNAGG 1 cut(s) 32
EcoO109I RGGNCCY 2 cut(s) 855, 1142
EcoO65I GGTNACC 1 cut(s) 640
EcoRII CCWGG 2 cut(s) 326, 543
EcoT14I CCWWGG 1 cut(s) 1323
EcoT38I GRGCYC 3 cut(s) 318, 443, 859
EgeI GGCGCC 1 cut(s) 952
EheI GGCGCC 1 cut(s) 952
ErhI CCWWGG 1 cut(s) 1323
FaeI CATG 3 cut(s) 853, 1306, 1415
FaqI GGGAC 3 cut(s) 801, 1596, 1599
FatI CATG 3 cut(s) 849, 1302, 1411
FauI CCCGC 4 cut(s) 252, 762, 883, 914
FbaI TGATCA 1 cut(s) 1227
FblI GTMKAC 2 cut(s) 690, 1359
Fnu4HI GCNGC 9 cut(s) 153, 203, 338, 351, 354, 549, 1062, 1115, 1408
FokI GGATG 4 cut(s) 527, 730, 796, 1454
FriOI GRGCYC 3 cut(s) 318, 443, 859
Fsp4HI GCNGC 9 cut(s) 153, 203, 338, 351, 354, 549, 1062, 1115, 1408
FspBI CTAG 6 cut(s) 5, 239, 308, 1268, 1596, 1608
GlaI GCGC 5 cut(s) 780, 810, 952, 1060, 1102
GluI GCNGC 9 cut(s) 153, 203, 338, 351, 354, 549, 1062, 1115, 1408
GsaI CCCAGC 2 cut(s) 238, 727
HaeII RGCGCY 1 cut(s) 954
HaeIII GGCC 8 cut(s) 280, 337, 479, 617, 701, 842, 857, 1047
HgaI GACGC 2 cut(s) 952, 1443
HhaI GCGC 5 cut(s) 781, 811, 953, 1061, 1103
Hin1I GRCGYC 4 cut(s) 662, 944, 951, 1454
Hin1II CATG 3 cut(s) 853, 1306, 1415
Hin6I GCGC 5 cut(s) 779, 809, 951, 1059, 1101
HinP1I GCGC 5 cut(s) 779, 809, 951, 1059, 1101
HincII GTYRAC 3 cut(s) 180, 691, 1360
HindII GTYRAC 3 cut(s) 180, 691, 1360
HinfI GANTC 7 cut(s) 181, 505, 571, 964, 974, 1315, 1570
HphI GGTGA 6 cut(s) 60, 355, 545, 1031, 1094, 1365
Hpy166II GTNNAC 5 cut(s) 25, 180, 691, 1213, 1360
Hpy188I TCNGA 7 cut(s) 267, 372, 527, 600, 973, 1139, 1298
Hpy8I GTNNAC 5 cut(s) 25, 180, 691, 1213, 1360
Hpy99I CGWCG 4 cut(s) 664, 695, 764, 795
HpyAV CCTTC 5 cut(s) 305, 340, 997, 1189, 1253
HpyCH4III ACNGT 5 cut(s) 72, 464, 533, 1039, 1463
HpyCH4IV ACGT 8 cut(s) 65, 607, 612, 662, 827, 957, 1191, 1338
HpyCH4V TGCA 2 cut(s) 155, 1432
HpyF10VI GCNNNNNNNGC 5 cut(s) 244, 337, 665, 1067, 1400
HpyF3I CTNAG 5 cut(s) 597, 1028, 1075, 1104, 1482
HpySE526I ACGT 8 cut(s) 65, 607, 612, 662, 827, 957, 1191, 1338
Hsp92I GRCGYC 4 cut(s) 662, 944, 951, 1454
Hsp92II CATG 3 cut(s) 853, 1306, 1415
HspAI GCGC 5 cut(s) 779, 809, 951, 1059, 1101
KasI GGCGCC 1 cut(s) 950
Kpn2I TCCGGA 1 cut(s) 390
Ksp22I TGATCA 1 cut(s) 1227
KspI CCGCGG 1 cut(s) 817
Kzo9I GATC 7 cut(s) 262, 706, 738, 1206, 1227, 1510, 1517
LmnI GCTCC 5 cut(s) 48, 210, 223, 446, 816
Lsp1109I GCAGC 5 cut(s) 139, 189, 362, 1073, 1394
LweI GCATC 2 cut(s) 591, 1254
MaeI CTAG 6 cut(s) 5, 239, 308, 1268, 1596, 1608
MaeII ACGT 8 cut(s) 65, 607, 612, 662, 827, 957, 1191, 1338
MaeIII GTNAC 6 cut(s) 66, 608, 640, 1039, 1082, 1371
MalI GATC 7 cut(s) 264, 708, 740, 1208, 1229, 1512, 1519
MboI GATC 7 cut(s) 262, 706, 738, 1206, 1227, 1510, 1517
MboII GAAGA 8 cut(s) 90, 272, 394, 896, 998, 1240, 1283, 1608
MflI RGATCY 2 cut(s) 706, 1517
MhlI GDGCHC 3 cut(s) 318, 443, 859
MluCI AATT 2 cut(s) 127, 1532
Mly113I GGCGCC 1 cut(s) 951
MlyI GAGTC 3 cut(s) 175, 973, 983
MroI TCCGGA 1 cut(s) 390
MseI TTAA 4 cut(s) 83, 141, 1092, 1621
MslI CAYNNNNRTG 2 cut(s) 869, 1367
MspA1I CMGCKG 3 cut(s) 353, 727, 816
MspR9I CCNGG 8 cut(s) 252, 253, 328, 427, 545, 704, 948, 1242
Mva1269I GAATGC 1 cut(s) 1483
MvaI CCWGG 2 cut(s) 328, 545
MvnI CGCG 3 cut(s) 781, 809, 816
MwoI GCNNNNNNNGC 5 cut(s) 244, 337, 665, 1067, 1400
NarI GGCGCC 1 cut(s) 951
NciI CCSGG 6 cut(s) 252, 253, 427, 704, 948, 1242
NdeII GATC 7 cut(s) 262, 706, 738, 1206, 1227, 1510, 1517
NlaIII CATG 3 cut(s) 853, 1306, 1415
NlaIV GGNNCC 8 cut(s) 219, 702, 820, 857, 926, 952, 1144, 1239
NmeAIII GCCGAG 2 cut(s) 987, 1035
NmuCI GTSAC 4 cut(s) 66, 1039, 1082, 1371
NspI RCATGY 1 cut(s) 1306
PaeR7I CTCGAG 1 cut(s) 833
PaqCI CACCTGC 1 cut(s) 331
PceI AGGCCT 1 cut(s) 280
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 840
PctI GAATGC 1 cut(s) 1483
PfeI GAWTC 4 cut(s) 505, 571, 1315, 1570
PflFI GACNNNGTC 2 cut(s) 686, 800
PflMI CCANNNNNTGG 2 cut(s) 333, 1417
PkrI GCNGC 9 cut(s) 154, 204, 339, 352, 355, 550, 1063, 1116, 1409
PleI GAGTC 3 cut(s) 175, 972, 982
PluTI GGCGCC 1 cut(s) 954
PmaCI CACGTG 3 cut(s) 828, 958, 1339
PmlI CACGTG 3 cut(s) 828, 958, 1339
PpsI GAGTC 3 cut(s) 175, 972, 982
Ppu21I YACGTR 4 cut(s) 608, 828, 958, 1339
PpuMI RGGWCCY 1 cut(s) 1142
Psp124BI GAGCTC 1 cut(s) 443
Psp5II RGGWCCY 1 cut(s) 1142
Psp6I CCWGG 2 cut(s) 326, 543
PspCI CACGTG 3 cut(s) 828, 958, 1339
PspEI GGTNACC 1 cut(s) 640
PspFI CCCAGC 2 cut(s) 234, 723
PspGI CCWGG 2 cut(s) 326, 543
PspN4I GGNNCC 8 cut(s) 219, 702, 820, 857, 926, 952, 1144, 1239
PspOMI GGGCCC 1 cut(s) 855
PspPI GGNCC 7 cut(s) 477, 700, 840, 855, 856, 1045, 1142
PspPPI RGGWCCY 1 cut(s) 1142
PstNI CAGNNNCTG 1 cut(s) 119
PsuI RGATCY 2 cut(s) 706, 1517
PsyI GACNNNGTC 2 cut(s) 686, 800
RsaI GTAC 1 cut(s) 1013
RsaNI GTAC 1 cut(s) 1012
RseI CAYNNNNRTG 2 cut(s) 869, 1367
SacI GAGCTC 1 cut(s) 443
SacII CCGCGG 1 cut(s) 817
SalI GTCGAC 2 cut(s) 689, 1358
SaqAI TTAA 4 cut(s) 83, 141, 1092, 1621
SatI GCNGC 9 cut(s) 153, 203, 338, 351, 354, 549, 1062, 1115, 1408
Sau3AI GATC 7 cut(s) 262, 706, 738, 1206, 1227, 1510, 1517
Sau96I GGNCC 7 cut(s) 477, 700, 840, 855, 856, 1045, 1142
SchI GAGTC 3 cut(s) 175, 973, 983
ScrFI CCNGG 8 cut(s) 252, 253, 328, 427, 545, 704, 948, 1242
SduI GDGCHC 3 cut(s) 318, 443, 859
SfaNI GCATC 2 cut(s) 591, 1254
SfoI GGCGCC 1 cut(s) 952
Sfr274I CTCGAG 1 cut(s) 833
Sfr303I CCGCGG 1 cut(s) 817
SgrBI CCGCGG 1 cut(s) 817
SinI GGWCC 1 cut(s) 1142
SlaI CTCGAG 1 cut(s) 833
SmaI CCCGGG 1 cut(s) 253
SmiMI CAYNNNNRTG 2 cut(s) 869, 1367
SmlI CTYRAG 3 cut(s) 833, 1280, 1558
SmoI CTYRAG 3 cut(s) 833, 1280, 1558
Sse9I AATT 2 cut(s) 127, 1532
SseBI AGGCCT 1 cut(s) 280
SspDI GGCGCC 1 cut(s) 950
SspMI CTAG 6 cut(s) 5, 239, 308, 1268, 1596, 1608
SstI GAGCTC 1 cut(s) 443
StuI AGGCCT 1 cut(s) 280
StyD4I CCNGG 8 cut(s) 250, 251, 326, 425, 543, 702, 946, 1240
StyI CCWWGG 1 cut(s) 1323
TaaI ACNGT 5 cut(s) 72, 464, 533, 1039, 1463
TaiI ACGT 8 cut(s) 68, 610, 615, 665, 830, 960, 1194, 1341
TaqI TCGA 9 cut(s) 125, 195, 569, 690, 731, 834, 984, 1289, 1359
TasI AATT 2 cut(s) 127, 1532
TatI WGTACW 1 cut(s) 1011
TauI GCSGC 4 cut(s) 340, 356, 551, 1117
TfiI GAWTC 4 cut(s) 505, 571, 1315, 1570
Tru1I TTAA 4 cut(s) 83, 141, 1092, 1621
Tru9I TTAA 4 cut(s) 83, 141, 1092, 1621
TseFI GTSAC 4 cut(s) 66, 1039, 1082, 1371
TseI GCWGC 5 cut(s) 152, 202, 350, 1061, 1407
Tsp45I GTSAC 4 cut(s) 66, 1039, 1082, 1371
TspDTI ATGAA 2 cut(s) 529, 1240
TspGWI ACGGA 3 cut(s) 84, 299, 967
TspMI CCCGGG 1 cut(s) 251
Tth111I GACNNNGTC 2 cut(s) 686, 800
Van91I CCANNNNNTGG 2 cut(s) 333, 1417
VpaK11BI GGWCC 1 cut(s) 1142
XagI CCTNNNNNAGG 1 cut(s) 32
XbaI TCTAGA 1 cut(s) 307
XceI RCATGY 1 cut(s) 1306
XcmI CCANNNNNNNNNTGG 1 cut(s) 1396
XhoI CTCGAG 1 cut(s) 833
XmaI CCCGGG 1 cut(s) 251
XmiI GTMKAC 2 cut(s) 690, 1359
XspI CTAG 6 cut(s) 5, 239, 308, 1268, 1596, 1608
ZraI GACGTC 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.