Rmu_sc0005949.1_g000016

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005949.1
OG0000619
Physical Location & Seq
Forward (+)
76290 .. 77186
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005949.1_g000016.1.cds

Sequence Viewer

Length: 816 bp
atgttcctccgtgacaggtccggctttgacccatcacgagccatgaatgtgttgtgttggaactgccaagggattgggaacccttggacaatgcatgggctgaaagggctagtggcccttaactttcccgacttgattttgcttactgagacaaagtgtattgtgcaagagattgataaagttctttttcaaattggctttaaaaatgtgttggcgttccggtgtaagatggaaagaaaacccaatggaagggtaaccagggctggtggagtgtgtcttctgtggaaggagtatgttgatgtagcgcttcgctcatactcggagcaccacatcgacgttctagtgggtagtgtgggtgatgttaatagatggcgtttcactaggttttatggacaccctaaagttgaacaacgacgtgaaacttggaatttgctcaggaggttagggcaaaacaatggtttcccttggattgtagggggagacttcaacgagattctacgtgcactagaaaaagaagggggtccacctagatgtataagaggtcgccgtgctggacaggttattaagtgtcgcctggatcgtttcatggctacaaagagttggactgatatcttccaggcttcaagggtgaagcatcttaacccgtccaagtctgatcaccttcccatcttgttggaagtgcgtttaatgaggccaagccagagaaggaagaagaaacgattccgtttcgaagaattttggcttcaggaggaggactgtggtggcattataaagtggggctgggaggtggtctcagatggaaacccgttcgtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

271

Amino Acids

31.62

Weight (kDa)

9.89

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 770
AclWI GGATC 1 cut(s) 585
AcsI RAATTY 2 cut(s) 427, 734
AcuI CTGAAG 1 cut(s) 728
AfeI AGCGCT 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 4 cut(s) 191, 407, 487, 624
AjiI CACGTC 1 cut(s) 416
AjnI CCWGG 3 cut(s) 257, 573, 615
Alw21I GWGCWC 2 cut(s) 327, 505
Alw26I GTCTC 3 cut(s) 143, 474, 796
Alw44I GTGCAC 1 cut(s) 501
AlwI GGATC 1 cut(s) 585
Aor51HI AGCGCT 1 cut(s) 306
AoxI GGCC 2 cut(s) 114, 692
ApaLI GTGCAC 1 cut(s) 501
ApoI RAATTY 2 cut(s) 427, 734
Asp700I GAANNNNTTC 1 cut(s) 719
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 3 cut(s) 18, 115, 521
AsuHPI GGTGA 3 cut(s) 368, 640, 650
AsuII TTCGAA 1 cut(s) 729
AvaII GGWCC 2 cut(s) 18, 521
BaeGI GKGCMC 1 cut(s) 505
BauI CACGAG 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 269
Bbv12I GWGCWC 2 cut(s) 327, 505
BccI CCATC 5 cut(s) 40, 223, 363, 674, 791
BceAI ACGGC 1 cut(s) 531
BciT130I CCWGG 3 cut(s) 259, 575, 617
BclI TGATCA 1 cut(s) 655
BcoDI GTCTC 3 cut(s) 143, 474, 796
BfaI CTAG 5 cut(s) 110, 341, 381, 506, 528
BfoI RGCGCY 1 cut(s) 308
Bme1390I CCNGG 3 cut(s) 259, 575, 617
Bme18I GGWCC 2 cut(s) 18, 521
BmgBI CACGTC 1 cut(s) 416
BmgT120I GGNCC 3 cut(s) 18, 115, 521
BmiI GGNNCC 2 cut(s) 80, 522
BmrFI CCNGG 3 cut(s) 259, 575, 617
BmsI GCATC 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 269
BplI GAGNNNNNCTC 2 cut(s) 776, 808
Bpu10I CCTNAGC 1 cut(s) 434
Bpu14I TTCGAA 1 cut(s) 729
BsaAI YACGTR 1 cut(s) 500
BsaI GGTCTC 1 cut(s) 796
BsaJI CCNNGG 4 cut(s) 67, 83, 258, 464
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 249
BseBI CCWGG 3 cut(s) 259, 575, 617
BseDI CCNNGG 4 cut(s) 67, 83, 258, 464
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 3 cut(s) 138, 448, 807
BseRI GAGGAG 1 cut(s) 764
BseSI GKGCMC 1 cut(s) 505
BseYI CCCAGC 1 cut(s) 780
BshFI GGCC 2 cut(s) 116, 694
BsiHKAI GWGCWC 2 cut(s) 327, 505
BsiSI CCGG 2 cut(s) 21, 220
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 3 cut(s) 143, 474, 796
BsnI GGCC 2 cut(s) 116, 694
Bso31I GGTCTC 1 cut(s) 796
Bsp119I TTCGAA 1 cut(s) 729
Bsp1286I GDGCHC 2 cut(s) 327, 505
Bsp143I GATC 2 cut(s) 577, 655
BspANI GGCC 2 cut(s) 116, 694
BspCNI CTCAG 3 cut(s) 139, 447, 806
BspLI GGNNCC 2 cut(s) 80, 522
BspPI GGATC 1 cut(s) 585
BspT104I TTCGAA 1 cut(s) 729
BspTNI GGTCTC 1 cut(s) 796
BssECI CCNNGG 4 cut(s) 67, 83, 258, 464
BssMI GATC 2 cut(s) 577, 655
BssSI CACGAG 1 cut(s) 36
BssT1I CCWWGG 3 cut(s) 67, 83, 464
Bst2BI CACGAG 1 cut(s) 36
Bst2UI CCWGG 3 cut(s) 259, 575, 617
Bst4CI ACNGT 1 cut(s) 758
BstBAI YACGTR 1 cut(s) 500
BstBI TTCGAA 1 cut(s) 729
BstDEI CTNAG 3 cut(s) 147, 434, 793
BstEII GGTNACC 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 2 cut(s) 580, 658
BstMAI GTCTC 3 cut(s) 143, 474, 796
BstMBI GATC 2 cut(s) 577, 655
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 3 cut(s) 259, 575, 617
BstPI GGTNACC 1 cut(s) 253
BstSCI CCNGG 3 cut(s) 257, 573, 615
BstSLI GKGCMC 1 cut(s) 505
BstV2I GAAGAC 1 cut(s) 269
BstXI CCANNNNNNTGG 2 cut(s) 74, 673
BsuRI GGCC 2 cut(s) 116, 694
BtrI CACGTC 1 cut(s) 416
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 3 cut(s) 18, 115, 521
CviAII CATG 3 cut(s) 43, 95, 586
DdeI CTNAG 3 cut(s) 147, 434, 793
DpnI GATC 2 cut(s) 579, 657
DpnII GATC 2 cut(s) 577, 655
DraI TTTAAA 1 cut(s) 202
Eco130I CCWWGG 3 cut(s) 67, 83, 464
Eco31I GGTCTC 1 cut(s) 796
Eco32I GATATC 1 cut(s) 610
Eco47I GGWCC 2 cut(s) 18, 521
Eco47III AGCGCT 1 cut(s) 306
Eco57I CTGAAG 1 cut(s) 728
Eco91I GGTNACC 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 253
EcoRII CCWGG 3 cut(s) 257, 573, 615
EcoRV GATATC 1 cut(s) 610
EcoT14I CCWWGG 3 cut(s) 67, 83, 464
EcoT22I ATGCAT 1 cut(s) 96
ErhI CCWWGG 3 cut(s) 67, 83, 464
FaeI CATG 3 cut(s) 46, 98, 589
FaiI YATR 8 cut(s) 44, 96, 294, 316, 390, 536, 587, 770
FatI CATG 3 cut(s) 42, 94, 585
FbaI TGATCA 1 cut(s) 655
FspBI CTAG 5 cut(s) 110, 341, 381, 506, 528
GlaI GCGC 1 cut(s) 306
GsaI CCCAGC 1 cut(s) 784
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 2 cut(s) 116, 694
HapII CCGG 2 cut(s) 21, 220
HhaI GCGC 1 cut(s) 307
Hin1II CATG 3 cut(s) 46, 98, 589
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 2 cut(s) 493, 720
HpaII CCGG 2 cut(s) 21, 220
HphI GGTGA 3 cut(s) 368, 640, 650
Hpy166II GTNNAC 2 cut(s) 503, 524
Hpy188I TCNGA 3 cut(s) 322, 655, 796
Hpy188III TCNNGA 4 cut(s) 36, 128, 436, 746
Hpy8I GTNNAC 2 cut(s) 503, 524
Hpy99I CGWCG 2 cut(s) 338, 417
HpyAV CCTTC 5 cut(s) 243, 280, 509, 671, 699
HpyCH4III ACNGT 1 cut(s) 758
HpyCH4IV ACGT 3 cut(s) 336, 415, 499
HpyCH4V TGCA 3 cut(s) 94, 166, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 3 cut(s) 147, 434, 793
HpySE526I ACGT 3 cut(s) 336, 415, 499
Hsp92II CATG 3 cut(s) 46, 98, 589
HspAI GCGC 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 2 cut(s) 577, 655
LmnI GCTCC 1 cut(s) 322
LweI GCATC 1 cut(s) 643
MaeI CTAG 5 cut(s) 110, 341, 381, 506, 528
MaeII ACGT 3 cut(s) 336, 415, 499
MaeIII GTNAC 2 cut(s) 11, 253
MalI GATC 2 cut(s) 579, 657
MboI GATC 2 cut(s) 577, 655
MboII GAAGA 5 cut(s) 269, 604, 721, 724, 743
MhlI GDGCHC 2 cut(s) 327, 505
MluCI AATT 3 cut(s) 192, 427, 734
MmeI TCCRAC 3 cut(s) 38, 581, 654
MnlI CCTC 7 cut(s) 17, 432, 533, 684, 742, 745, 778
Mph1103I ATGCAT 1 cut(s) 96
MroXI GAANNNNTTC 1 cut(s) 719
MseI TTAA 6 cut(s) 120, 201, 363, 564, 639, 686
MslI CAYNNNNRTG 2 cut(s) 47, 529
MspI CCGG 2 cut(s) 21, 220
MspR9I CCNGG 3 cut(s) 259, 575, 617
MvaI CCWGG 3 cut(s) 259, 575, 617
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeII GATC 2 cut(s) 577, 655
NlaIII CATG 3 cut(s) 46, 98, 589
NlaIV GGNNCC 2 cut(s) 80, 522
NmuCI GTSAC 1 cut(s) 11
NsiI ATGCAT 1 cut(s) 96
NspV TTCGAA 1 cut(s) 729
PcsI WCGNNNNNNNCGW 1 cut(s) 577
PdmI GAANNNNTTC 1 cut(s) 719
PfeI GAWTC 2 cut(s) 493, 720
Ppu21I YACGTR 1 cut(s) 500
PsiI TTATAA 1 cut(s) 770
Psp6I CCWGG 3 cut(s) 257, 573, 615
PspEI GGTNACC 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 780
PspGI CCWGG 3 cut(s) 257, 573, 615
PspN4I GGNNCC 2 cut(s) 80, 522
PspPI GGNCC 3 cut(s) 18, 115, 521
RseI CAYNNNNRTG 2 cut(s) 47, 529
SaqAI TTAA 6 cut(s) 120, 201, 363, 564, 639, 686
Sau3AI GATC 2 cut(s) 577, 655
Sau96I GGNCC 3 cut(s) 18, 115, 521
ScrFI CCNGG 3 cut(s) 259, 575, 617
SduI GDGCHC 2 cut(s) 327, 505
SfaNI GCATC 1 cut(s) 643
SfuI TTCGAA 1 cut(s) 729
SinI GGWCC 2 cut(s) 18, 521
SmiMI CAYNNNNRTG 2 cut(s) 47, 529
Sse9I AATT 3 cut(s) 192, 427, 734
SspMI CTAG 5 cut(s) 110, 341, 381, 506, 528
StyD4I CCNGG 3 cut(s) 257, 573, 615
StyI CCWWGG 3 cut(s) 67, 83, 464
TaaI ACNGT 1 cut(s) 758
TaiI ACGT 3 cut(s) 339, 418, 502
TaqI TCGA 2 cut(s) 333, 729
TasI AATT 3 cut(s) 192, 427, 734
TfiI GAWTC 2 cut(s) 493, 720
Tru1I TTAA 6 cut(s) 120, 201, 363, 564, 639, 686
Tru9I TTAA 6 cut(s) 120, 201, 363, 564, 639, 686
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 59, 574
TspGWI ACGGA 1 cut(s) 713
VneI GTGCAC 1 cut(s) 501
VpaK11BI GGWCC 2 cut(s) 18, 521
XapI RAATTY 2 cut(s) 427, 734
XmnI GAANNNNTTC 1 cut(s) 719
XspI CTAG 5 cut(s) 110, 341, 381, 506, 528
Zsp2I ATGCAT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.