Rmu_sc0002531.1_g000047

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002531.1
OG0000619
Physical Location & Seq
Reverse (-)
245654 .. 247826
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002531.1_g000047.1.cds

Sequence Viewer

Length: 1968 bp
atggtgcgtgatagaacagagatggaggaggacgacgggccggagaatattggtgatgggatggaggtggatgggggtccgatgacggacttggctgaaggcgccagggttgctaaacgaaggcggaaggagacggctacggcggaggttccgattttggatgatagtaatttacggggtgtggagattgattgttgtccagatttctcgttggcattgattgctaacgggtatgaaaaaggaaaggtggatgcgggaatggtgcaatcaggggaggagtctcagggtcgatccagttgtttagggcgtgaaatttgcgtcccgccaaaaggggatttgaccttaaattcccctaccttaccacaagggtctgatcctctgcctctgatgggacctatagttggacagaaacttgccatacaggggtgcaaaggtgatttagaagtggtcttgtcaagaattgggacgcgctctgaagtgttcaaccgtgatgggtccggctttgacccatcacgagaaatgaatatattgtgttggaactgccaggggattgggaacccctggacagttacggggcttaaagggataatttccctaaacattcccaatttaatttttctaagtgaaacacggtgtacagcggaggagattaagggtgtgcggaggcaggtgggttggaagaattcttttgcggtagactgtatgttcgttaaacgaagaagaaagaaaggagtaagtagagcaggaggactttgccttttatggaacgatgatatttctgtggctcttcaatcttactctgagagccatattgacgttgttataggggagaatgggggtcctgattgctggaggtttacgggtctatatggaaaacctaaagtagaggaaagacatcggacatggaatttgttgcgtcaattgagtttacaagggaatttaccttgggtggtaggaggtgattataatgagattacggtgagttctgataagatgggtggcgctttacgtagtgctacacaaatgcgaggtatgcatgaggcattggagttttgtgagcttggagacattaaatttgttggtcctaagtttacttggaggggtattagaggtggggaggaggtgaaagtcagattggataggttcactagtactataccttggaaagagcggtttcctgcgtcaagagtaaaacaccttgatcctagtaaatctgatcatgtgcccattatgttggaagtcagagagcataaagtcaaaaagaggaaaagaaagagacatttctgttttgaagaatattggttgttggaggacaagtgtagggaggtagttaagttgggttgggagggttcttcttctggtcattctagtccattccaggttttgtggaacaaattacatgtaaccagggcagcgttggagttttggagtcaagagcattttggggttatcagcaaggaaattcaacagacgcgtgcactgcttgctagcttctatgatgatccaactacgtcatcgaactccacggtagagaacaggttgcttttagagtcaaagcttaatgatcttcttaatcaggaacatgttttttggaggcaacgagcaaagattttctggttggcggatggggatatgaacaccaaatttttccatcaaagggctaataacaggaggaaaaagaacatgatttatggtttgtttaatgacgatggacagtggtgtactgatgattgtgacttggagagaattattttaagttactttggcaagctttttacctcttcacaacctcaaaacttccagaatgttctagaagctattaatagtgtggtcacagtggatgataatgcttcccttactaaagacattgatctggaggaggttttcttcgcactcaagcacatgcacccatctaaaactccgggcccctttccccgtttcaaagtgcattcgtgccaggtagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

655

Amino Acids

74.07

Weight (kDa)

6.75

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 966
AarI CACCTGC 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 658
AccB1I GGYRCC 1 cut(s) 101
AccBSI CCGCTC 1 cut(s) 1171
AccI GTMKAC 1 cut(s) 696
AccII CGCG 2 cut(s) 469, 1474
AciI CCGC 9 cut(s) 124, 143, 254, 323, 641, 661, 692, 1171, 1622
AclWI GGATC 4 cut(s) 285, 368, 1196, 1496
AcsI RAATTY 8 cut(s) 312, 346, 682, 907, 937, 1073, 1461, 1643
AcuI CTGAAG 2 cut(s) 117, 495
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 3 cut(s) 637, 1153, 1723
AfiI CCNNNNNNNGG 5 cut(s) 329, 389, 401, 423, 1657
AflIII ACRYGT 3 cut(s) 1399, 1472, 1582
AgsI TTSAA 5 cut(s) 484, 791, 1292, 1466, 1942
AhlI ACTAGT 1 cut(s) 1148
AjnI CCWGG 6 cut(s) 104, 543, 560, 1377, 1406, 1956
AjuI GAANNNNNNNTTGG 2 cut(s) 1118, 1150
AluBI AGCT 5 cut(s) 1060, 1491, 1558, 1771, 1817
AluI AGCT 5 cut(s) 1060, 1491, 1558, 1771, 1817
Alw21I GWGCWC 1 cut(s) 1480
Alw26I GTCTC 4 cut(s) 125, 285, 1059, 1270
Alw44I GTGCAC 1 cut(s) 1476
AlwI GGATC 4 cut(s) 285, 368, 1196, 1496
AoxI GGCC 2 cut(s) 38, 1924
ApaI GGGCCC 1 cut(s) 1928
ApaLI GTGCAC 1 cut(s) 1476
ApeKI GCWGC 1 cut(s) 1412
ApoI RAATTY 8 cut(s) 312, 346, 682, 907, 937, 1073, 1461, 1643
ArsI GACNNNNNNTTYG 6 cut(s) 689, 721, 892, 924, 1058, 1090
AseI ATTAAT 1 cut(s) 1821
AspLEI GCGC 3 cut(s) 104, 471, 1004
AspS9I GGNCC 8 cut(s) 38, 77, 392, 495, 839, 1082, 1924, 1925
AsuC2I CCSGG 1 cut(s) 1923
AsuHPI GGTGA 5 cut(s) 65, 446, 971, 991, 1135
AsuNHI GCTAGC 1 cut(s) 1487
AvaII GGWCC 5 cut(s) 77, 392, 495, 839, 1082
BaeGI GKGCMC 3 cut(s) 1227, 1480, 1928
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 1928
BauI CACGAG 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 1480
BbvI GCAGC 1 cut(s) 1424
BceAI ACGGC 2 cut(s) 150, 156
BciT130I CCWGG 6 cut(s) 106, 545, 562, 1379, 1408, 1958
BclI TGATCA 1 cut(s) 1216
BcnI CCSGG 1 cut(s) 1923
BcoDI GTCTC 4 cut(s) 125, 285, 1059, 1270
BcuI ACTAGT 1 cut(s) 1148
BfaI CTAG 5 cut(s) 1149, 1206, 1368, 1488, 1811
BfmI CTRYAG 1 cut(s) 396
BfoI RGCGCY 2 cut(s) 105, 1005
BfuAI ACCTGC 1 cut(s) 658
BisI GCNGC 1 cut(s) 1413
BlsI GCNGC 1 cut(s) 1414
BmcAI AGTACT 1 cut(s) 1153
Bme1390I CCNGG 7 cut(s) 106, 545, 562, 1379, 1408, 1923, 1958
Bme18I GGWCC 5 cut(s) 77, 392, 495, 839, 1082
BmgT120I GGNCC 8 cut(s) 38, 77, 392, 495, 839, 1082, 1924, 1925
BmiI GGNNCC 9 cut(s) 78, 103, 150, 393, 496, 557, 840, 1926, 1927
BmrFI CCNGG 7 cut(s) 106, 545, 562, 1379, 1408, 1923, 1958
BmsI GCATC 1 cut(s) 241
BmtI GCTAGC 1 cut(s) 1491
BpmI CTGGAG 2 cut(s) 871, 1895
BpuEI CTTGAG 1 cut(s) 1880
BpuMI CCSGG 1 cut(s) 1923
BsaAI YACGTR 1 cut(s) 1010
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 7 cut(s) 105, 544, 560, 944, 1160, 1407, 1524
BsaXI ACNNNNNCTCC 2 cut(s) 1301, 1331
Bsc4I CCNNNNNNNGG 5 cut(s) 329, 389, 401, 423, 1657
Bse1I ACTGG 1 cut(s) 294
BseBI CCWGG 6 cut(s) 106, 545, 562, 1379, 1408, 1958
BseDI CCNNGG 7 cut(s) 105, 544, 560, 944, 1160, 1407, 1524
BseGI GGATG 6 cut(s) 66, 76, 166, 256, 1630, 1846
BseLI CCNNNNNNNGG 5 cut(s) 329, 389, 401, 423, 1657
BseMII CTCAG 2 cut(s) 296, 792
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 5 cut(s) 41, 290, 659, 1133, 1892
BseSI GKGCMC 3 cut(s) 1227, 1480, 1928
BseXI GCAGC 1 cut(s) 1424
Bsh1236I CGCG 2 cut(s) 469, 1474
BshFI GGCC 2 cut(s) 40, 1926
BshNI GGYRCC 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 1480
BsiSI CCGG 3 cut(s) 41, 498, 1922
BslFI GGGAC 3 cut(s) 305, 405, 478
BslI CCNNNNNNNGG 5 cut(s) 329, 389, 401, 423, 1657
BsmAI GTCTC 4 cut(s) 125, 285, 1059, 1270
BsmBI CGTCTC 1 cut(s) 125
BsmFI GGGAC 3 cut(s) 305, 405, 478
BsmI GAATGC 1 cut(s) 1948
BsnI GGCC 2 cut(s) 40, 1926
Bsp120I GGGCCC 1 cut(s) 1924
Bsp1286I GDGCHC 3 cut(s) 1227, 1480, 1928
Bsp1407I TGTACA 1 cut(s) 635
Bsp143I GATC 7 cut(s) 290, 373, 1201, 1216, 1501, 1564, 1870
BspACI CCGC 9 cut(s) 124, 143, 254, 323, 641, 661, 692, 1171, 1622
BspANI GGCC 2 cut(s) 40, 1926
BspCNI CTCAG 2 cut(s) 295, 793
BspFNI CGCG 2 cut(s) 469, 1474
BspLI GGNNCC 9 cut(s) 78, 103, 150, 393, 496, 557, 840, 1926, 1927
BspMI ACCTGC 1 cut(s) 658
BspOI GCTAGC 1 cut(s) 1491
BspPI GGATC 4 cut(s) 285, 368, 1196, 1496
BspQI GCTCTTC 1 cut(s) 792
BspT107I GGYRCC 1 cut(s) 101
BsrBI CCGCTC 1 cut(s) 1171
BsrGI TGTACA 1 cut(s) 635
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 7 cut(s) 105, 544, 560, 944, 1160, 1407, 1524
BssMI GATC 7 cut(s) 290, 373, 1201, 1216, 1501, 1564, 1870
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 513
BssT1I CCWWGG 2 cut(s) 944, 1160
Bst2BI CACGAG 1 cut(s) 513
Bst2UI CCWGG 6 cut(s) 106, 545, 562, 1379, 1408, 1958
Bst4CI ACNGT 8 cut(s) 488, 568, 633, 701, 979, 1528, 1716, 1837
Bst6I CTCTTC 2 cut(s) 792, 1786
BstACI GRCGYC 1 cut(s) 102
BstAPI GCANNNNNTGC 2 cut(s) 221, 1484
BstAUI TGTACA 1 cut(s) 635
BstBAI YACGTR 1 cut(s) 1010
BstC8I GCNNGC 4 cut(s) 1476, 1485, 1489, 1769
BstDEI CTNAG 4 cut(s) 282, 620, 801, 1086
BstDSI CCRYGG 1 cut(s) 1524
BstF5I GGATG 6 cut(s) 66, 76, 166, 256, 1630, 1846
BstFNI CGCG 2 cut(s) 469, 1474
BstH2I RGCGCY 2 cut(s) 105, 1005
BstHHI GCGC 3 cut(s) 104, 471, 1004
BstKTI GATC 7 cut(s) 293, 376, 1204, 1219, 1504, 1567, 1873
BstMAI GTCTC 4 cut(s) 125, 285, 1059, 1270
BstMBI GATC 7 cut(s) 290, 373, 1201, 1216, 1501, 1564, 1870
BstMWI GCNNNNNNNGC 6 cut(s) 101, 110, 221, 1033, 1480, 1484
BstNI CCWGG 6 cut(s) 106, 545, 562, 1379, 1408, 1958
BstNSI RCATGY 3 cut(s) 1403, 1586, 1906
BstSCI CCNGG 7 cut(s) 104, 543, 560, 1377, 1406, 1921, 1956
BstSFI CTRYAG 1 cut(s) 396
BstSLI GKGCMC 3 cut(s) 1227, 1480, 1928
BstSNI TACGTA 1 cut(s) 1010
BstUI CGCG 2 cut(s) 469, 1474
BstV1I GCAGC 1 cut(s) 1424
BstXI CCANNNNNNTGG 2 cut(s) 551, 1234
BsuRI GGCC 2 cut(s) 40, 1926
BtgI CCRYGG 1 cut(s) 1524
BtsCI GGATG 6 cut(s) 66, 76, 166, 256, 1630, 1846
BtsI GCAGTG 1 cut(s) 1478
BtsIMutI CAGTG 3 cut(s) 1478, 1721, 1842
BveI ACCTGC 1 cut(s) 658
Cac8I GCNNGC 4 cut(s) 1476, 1485, 1489, 1769
CfoI GCGC 3 cut(s) 104, 471, 1004
Cfr13I GGNCC 8 cut(s) 38, 77, 392, 495, 839, 1082, 1924, 1925
CseI GACGC 5 cut(s) 307, 475, 905, 1170, 1480
Csp6I GTAC 3 cut(s) 636, 1152, 1722
CviAII CATG 7 cut(s) 903, 1037, 1220, 1400, 1583, 1684, 1903
CviQI GTAC 3 cut(s) 636, 1152, 1722
DdeI CTNAG 4 cut(s) 282, 620, 801, 1086
DinI GGCGCC 1 cut(s) 103
DpnI GATC 7 cut(s) 292, 375, 1203, 1218, 1503, 1566, 1872
DpnII GATC 7 cut(s) 290, 373, 1201, 1216, 1501, 1564, 1870
Eam1104I CTCTTC 2 cut(s) 792, 1786
EarI CTCTTC 2 cut(s) 792, 1786
EciI GGCGGA 3 cut(s) 139, 158, 1637
Eco105I TACGTA 1 cut(s) 1010
Eco130I CCWWGG 2 cut(s) 944, 1160
Eco24I GRGCYC 1 cut(s) 1928
Eco47I GGWCC 5 cut(s) 77, 392, 495, 839, 1082
Eco57I CTGAAG 2 cut(s) 117, 495
EcoO109I RGGNCCY 3 cut(s) 392, 839, 1925
EcoRI GAATTC 1 cut(s) 682
EcoRII CCWGG 6 cut(s) 104, 543, 560, 1377, 1406, 1956
EcoT14I CCWWGG 2 cut(s) 944, 1160
EcoT22I ATGCAT 1 cut(s) 1038
EcoT38I GRGCYC 1 cut(s) 1928
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 2 cut(s) 944, 1160
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 7 cut(s) 906, 1040, 1223, 1403, 1586, 1687, 1906
FaqI GGGAC 3 cut(s) 305, 405, 478
FatI CATG 7 cut(s) 902, 1036, 1219, 1399, 1582, 1683, 1902
FauI CCCGC 2 cut(s) 247, 330
FbaI TGATCA 1 cut(s) 1216
FblI GTMKAC 1 cut(s) 696
Fnu4HI GCNGC 1 cut(s) 1413
FokI GGATG 6 cut(s) 73, 83, 173, 263, 1637, 1853
FriOI GRGCYC 1 cut(s) 1928
Fsp4HI GCNGC 1 cut(s) 1413
FspBI CTAG 5 cut(s) 1149, 1206, 1368, 1488, 1811
GlaI GCGC 3 cut(s) 103, 470, 1003
GluI GCNGC 1 cut(s) 1413
GsuI CTGGAG 2 cut(s) 871, 1895
HaeII RGCGCY 2 cut(s) 105, 1005
HaeIII GGCC 2 cut(s) 40, 1926
HapII CCGG 3 cut(s) 41, 498, 1922
HgaI GACGC 5 cut(s) 307, 475, 905, 1170, 1480
HhaI GCGC 3 cut(s) 104, 471, 1004
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 7 cut(s) 906, 1040, 1223, 1403, 1586, 1687, 1906
Hin6I GCGC 3 cut(s) 102, 469, 1002
HinP1I GCGC 3 cut(s) 102, 469, 1002
HindIII AAGCTT 2 cut(s) 1556, 1769
HinfI GANTC 3 cut(s) 278, 1429, 1550
HpaII CCGG 3 cut(s) 41, 498, 1922
HphI GGTGA 5 cut(s) 65, 446, 971, 991, 1135
Hpy166II GTNNAC 8 cut(s) 636, 697, 858, 929, 1092, 1146, 1478, 1722
Hpy8I GTNNAC 8 cut(s) 636, 697, 858, 929, 1092, 1146, 1478, 1722
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 92, 114, 121
HpyCH4III ACNGT 8 cut(s) 488, 568, 633, 701, 979, 1528, 1716, 1837
HpyCH4IV ACGT 3 cut(s) 816, 1009, 1511
HpyCH4V TGCA 6 cut(s) 265, 429, 1036, 1478, 1906, 1948
HpyF10VI GCNNNNNNNGC 6 cut(s) 101, 110, 221, 1033, 1480, 1484
HpyF3I CTNAG 4 cut(s) 282, 620, 801, 1086
HpySE526I ACGT 3 cut(s) 816, 1009, 1511
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 7 cut(s) 906, 1040, 1223, 1403, 1586, 1687, 1906
HspAI GCGC 3 cut(s) 102, 469, 1002
KasI GGCGCC 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 1216
Kzo9I GATC 7 cut(s) 290, 373, 1201, 1216, 1501, 1564, 1870
LguI GCTCTTC 1 cut(s) 792
Lsp1109I GCAGC 1 cut(s) 1424
LweI GCATC 1 cut(s) 241
MaeI CTAG 5 cut(s) 1149, 1206, 1368, 1488, 1811
MaeII ACGT 3 cut(s) 816, 1009, 1511
MaeIII GTNAC 5 cut(s) 568, 1402, 1733, 1757, 1831
MalI GATC 7 cut(s) 292, 375, 1203, 1218, 1503, 1566, 1872
MbiI CCGCTC 1 cut(s) 1171
MboI GATC 7 cut(s) 290, 373, 1201, 1216, 1501, 1564, 1870
MfeI CAATTG 1 cut(s) 920
MhlI GDGCHC 3 cut(s) 1227, 1480, 1928
MluI ACGCGT 1 cut(s) 1472
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 3 cut(s) 287, 1438, 1559
MmeI TCCRAC 7 cut(s) 382, 515, 656, 1215, 1287, 1398, 1529
Mph1103I ATGCAT 1 cut(s) 1038
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 3 cut(s) 41, 498, 1922
MspR9I CCNGG 7 cut(s) 106, 545, 562, 1379, 1408, 1923, 1958
MunI CAATTG 1 cut(s) 920
Mva1269I GAATGC 1 cut(s) 1948
MvaI CCWGG 6 cut(s) 106, 545, 562, 1379, 1408, 1958
MvnI CGCG 2 cut(s) 469, 1474
MwoI GCNNNNNNNGC 6 cut(s) 101, 110, 221, 1033, 1480, 1484
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 1 cut(s) 1923
NdeII GATC 7 cut(s) 290, 373, 1201, 1216, 1501, 1564, 1870
NheI GCTAGC 1 cut(s) 1487
NlaIII CATG 7 cut(s) 906, 1040, 1223, 1403, 1586, 1687, 1906
NlaIV GGNNCC 9 cut(s) 78, 103, 150, 393, 496, 557, 840, 1926, 1927
NmuCI GTSAC 2 cut(s) 1733, 1831
NsiI ATGCAT 1 cut(s) 1038
NspI RCATGY 3 cut(s) 1403, 1586, 1906
PaqCI CACCTGC 1 cut(s) 658
PciI ACATGT 2 cut(s) 1399, 1582
PciSI GCTCTTC 1 cut(s) 792
PctI GAATGC 1 cut(s) 1948
PkrI GCNGC 1 cut(s) 1414
PleI GAGTC 3 cut(s) 286, 1437, 1558
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 3 cut(s) 286, 1437, 1558
Ppu21I YACGTR 1 cut(s) 1010
PpuMI RGGWCCY 2 cut(s) 392, 839
PscI ACATGT 2 cut(s) 1399, 1582
PshBI ATTAAT 1 cut(s) 1821
PsiI TTATAA 1 cut(s) 966
Psp5II RGGWCCY 2 cut(s) 392, 839
Psp6I CCWGG 6 cut(s) 104, 543, 560, 1377, 1406, 1956
PspGI CCWGG 6 cut(s) 104, 543, 560, 1377, 1406, 1956
PspN4I GGNNCC 9 cut(s) 78, 103, 150, 393, 496, 557, 840, 1926, 1927
PspOMI GGGCCC 1 cut(s) 1924
PspPI GGNCC 8 cut(s) 38, 77, 392, 495, 839, 1082, 1924, 1925
PspPPI RGGWCCY 2 cut(s) 392, 839
RsaI GTAC 3 cut(s) 637, 1153, 1723
RsaNI GTAC 3 cut(s) 636, 1152, 1722
SapI GCTCTTC 1 cut(s) 792
SatI GCNGC 1 cut(s) 1413
Sau3AI GATC 7 cut(s) 290, 373, 1201, 1216, 1501, 1564, 1870
Sau96I GGNCC 8 cut(s) 38, 77, 392, 495, 839, 1082, 1924, 1925
ScaI AGTACT 1 cut(s) 1153
SchI GAGTC 3 cut(s) 287, 1438, 1559
ScrFI CCNGG 7 cut(s) 106, 545, 562, 1379, 1408, 1923, 1958
SduI GDGCHC 3 cut(s) 1227, 1480, 1928
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 396
SfoI GGCGCC 1 cut(s) 103
SinI GGWCC 5 cut(s) 77, 392, 495, 839, 1082
SmlI CTYRAG 1 cut(s) 1895
SmoI CTYRAG 1 cut(s) 1895
SnaBI TACGTA 1 cut(s) 1010
SpeI ACTAGT 1 cut(s) 1148
SsiI CCGC 9 cut(s) 124, 143, 254, 323, 641, 661, 692, 1171, 1622
SspDI GGCGCC 1 cut(s) 101
SspI AATATT 2 cut(s) 49, 1298
SspMI CTAG 5 cut(s) 1149, 1206, 1368, 1488, 1811
StyD4I CCNGG 7 cut(s) 104, 543, 560, 1377, 1406, 1921, 1956
StyI CCWWGG 2 cut(s) 944, 1160
TaaI ACNGT 8 cut(s) 488, 568, 633, 701, 979, 1528, 1716, 1837
TaiI ACGT 3 cut(s) 819, 1012, 1514
TaqI TCGA 2 cut(s) 289, 1517
TatI WGTACW 3 cut(s) 635, 1151, 1721
TscAI CASTG 3 cut(s) 1485, 1721, 1842
TseFI GTSAC 2 cut(s) 1733, 1831
TseI GCWGC 1 cut(s) 1412
Tsp45I GTSAC 2 cut(s) 1733, 1831
TspDTI ATGAA 3 cut(s) 249, 536, 1649
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 3 cut(s) 1485, 1721, 1842
VneI GTGCAC 1 cut(s) 1476
VpaK11BI GGWCC 5 cut(s) 77, 392, 495, 839, 1082
VspI ATTAAT 1 cut(s) 1821
XapI RAATTY 8 cut(s) 312, 346, 682, 907, 937, 1073, 1461, 1643
XbaI TCTAGA 1 cut(s) 1810
XceI RCATGY 3 cut(s) 1403, 1586, 1906
XcmI CCANNNNNNNNNTGG 1 cut(s) 1414
XmiI GTMKAC 1 cut(s) 696
XspI CTAG 5 cut(s) 1149, 1206, 1368, 1488, 1811
ZrmI AGTACT 1 cut(s) 1153
Zsp2I ATGCAT 1 cut(s) 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.