Rmu_co8486357.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8486357.1
OG0000619
Physical Location & Seq
Forward (+)
592 .. 2025
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8486357.1_g000002.1.cds

Sequence Viewer

Length: 1158 bp
atgaatgtactatgttggaactgccagggcattgggaacccctggacagttataggactcaaagggatagtatccctcaaccatcccagtgtaatctttttaagtgaaactctatgtacggctaaggaaatggtggaggtcaggaatcagatcgggtggaggaatgcaatcgcagtcgattgtaagtttgttaaaaagaaaaaaagcaagggtgtgagtagagcgggtgggttgtgtttgatgtggaaggaggaagtggatgtgtctctccaatctttatcagagagccatatcgatgtcactattggaaagagtggagaaccgaagagttggaggtttactggtttatatgggcaacctagagtggagaatcgatataagacttggagtttgttaagttatctgagtctgcaaggcaatctaccctgggttgttggaggagattacaatgaaatttcgcgtgcctcagataaattgggtggtgcgcttcgaagggcgagtcagatggcgggtttgcaaaaggcaatggctttttgtgagtcgggtgagctaccggtggtgggaccgaaatttacatggctggggattcgtgggggcgaggaagtgaaaataaggttggataaatttactgggtcgcttagttggaaaagtttgttcccagcgtcgaaggtgacgcatttgaatccttctgcttcagaccatttacctattttgttggaagttcgggaccaaaggttgcgtaggaagaaaaggaggcgacgtttcaagtttgaggaattttggttgaatgaggagtcttgcaaagaagtagttagactgggctgggagagcacggctggacctgatccattctttattttatggaacaaattgcaaactacccgagtagcattggagacgtggagtgagtctttgttcgatgataatgctttggagaatattgtgctttcatactttaaaaaactattcatgtcaacctcccatgcaaatttccagaacattttggacacattccctatgttggtttcacatgcagacaatgttcatttgacaagggaattggaagagacgaagatttacgatgcattaatggccatgcacccttcaaaggcaccgagcccagatggtttttcgccttctttttatcaaacgttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

385

Amino Acids

43.69

Weight (kDa)

9.11

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1111
AccBSI CCGCTC 1 cut(s) 224
AccII CGCG 1 cut(s) 460
AciI CCGC 2 cut(s) 224, 509
AclI AACGTT 1 cut(s) 1151
AclWI GGATC 1 cut(s) 839
AcoI YGGCCR 1 cut(s) 1092
AcsI RAATTY 5 cut(s) 453, 569, 623, 776, 988
AcuI CTGAAG 1 cut(s) 678
AfaI GTAC 2 cut(s) 9, 118
AfiI CCNNNNNNNGG 3 cut(s) 560, 1021, 1108
AgeI ACCGGT 1 cut(s) 553
AgsI TTSAA 4 cut(s) 682, 766, 787, 1107
AjiI CACGTC 1 cut(s) 900
AjnI CCWGG 3 cut(s) 24, 41, 425
AjuI GAANNNNNNNTTGG 2 cut(s) 599, 631
AluBI AGCT 1 cut(s) 550
AluI AGCT 1 cut(s) 550
Alw21I GWGCWC 1 cut(s) 833
Alw26I GTCTC 3 cut(s) 270, 890, 1061
AlwI GGATC 1 cut(s) 839
Ama87I CYCGRG 1 cut(s) 882
AoxI GGCC 1 cut(s) 1092
ApoI RAATTY 5 cut(s) 453, 569, 623, 776, 988
ArsI GACNNNNNNTTYG 4 cut(s) 373, 405, 484, 516
AseI ATTAAT 1 cut(s) 1088
AsiGI ACCGGT 1 cut(s) 553
AspLEI GCGC 1 cut(s) 487
AspS9I GGNCC 3 cut(s) 563, 727, 839
AsuHPI GGTGA 2 cut(s) 557, 682
AsuII TTCGAA 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 882
AvaII GGWCC 3 cut(s) 563, 727, 839
BalI TGGCCA 1 cut(s) 1094
BanI GGYRCC 1 cut(s) 1111
BanII GRGCYC 1 cut(s) 1121
Bbv12I GWGCWC 1 cut(s) 833
BccI CCATC 3 cut(s) 90, 499, 1118
BceAI ACGGC 2 cut(s) 135, 849
BcgI CGANNNNNNTGC 2 cut(s) 908, 942
BciT130I CCWGG 3 cut(s) 26, 43, 427
BciVI GTATCC 1 cut(s) 82
BcoDI GTCTC 3 cut(s) 270, 890, 1061
BfaI CTAG 2 cut(s) 360, 1156
BfuI GTATCC 1 cut(s) 82
Bme1390I CCNGG 3 cut(s) 26, 43, 427
Bme18I GGWCC 3 cut(s) 563, 727, 839
BmeT110I CYCGRG 1 cut(s) 882
BmgBI CACGTC 1 cut(s) 900
BmgT120I GGNCC 3 cut(s) 563, 727, 839
BmiI GGNNCC 4 cut(s) 38, 564, 728, 1113
BmrFI CCNGG 3 cut(s) 26, 43, 427
BmrI ACTGGG 3 cut(s) 81, 639, 827
BmsI GCATC 1 cut(s) 1072
BmuI ACTGGG 3 cut(s) 81, 639, 827
Bpu10I CCTNAGC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 490
Bsa29I ATCGAT 2 cut(s) 294, 373
BsaJI CCNNGG 4 cut(s) 25, 41, 425, 426
BsaWI WCCGGW 1 cut(s) 553
BsaXI ACNNNNNCTCC 2 cut(s) 745, 775
Bsc4I CCNNNNNNNGG 3 cut(s) 560, 1021, 1108
Bse118I RCCGGY 1 cut(s) 553
Bse1I ACTGG 4 cut(s) 87, 346, 634, 822
Bse3DI GCAATG 1 cut(s) 531
BseBI CCWGG 3 cut(s) 26, 43, 427
BseCI ATCGAT 2 cut(s) 294, 373
BseDI CCNNGG 4 cut(s) 25, 41, 425, 426
BseGI GGATG 2 cut(s) 82, 265
BseLI CCNNNNNNNGG 3 cut(s) 560, 1021, 1108
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 2 cut(s) 395, 480
BseNI ACTGG 4 cut(s) 87, 346, 634, 822
BseRI GAGGAG 2 cut(s) 453, 806
BseYI CCCAGC 3 cut(s) 580, 658, 822
Bsh1236I CGCG 1 cut(s) 460
BshFI GGCC 1 cut(s) 1094
BshNI GGYRCC 1 cut(s) 1111
BshTI ACCGGT 1 cut(s) 553
BshVI ATCGAT 2 cut(s) 294, 373
BsiHKAI GWGCWC 1 cut(s) 833
BsiHKCI CYCGRG 1 cut(s) 882
BsiSI CCGG 1 cut(s) 554
BslFI GGGAC 2 cut(s) 576, 740
BslI CCNNNNNNNGG 3 cut(s) 560, 1021, 1108
BsmAI GTCTC 3 cut(s) 270, 890, 1061
BsmBI CGTCTC 2 cut(s) 890, 1061
BsmFI GGGAC 2 cut(s) 576, 740
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 1 cut(s) 1094
BsoBI CYCGRG 1 cut(s) 882
Bsp119I TTCGAA 1 cut(s) 490
Bsp1286I GDGCHC 2 cut(s) 833, 1121
Bsp143I GATC 2 cut(s) 150, 844
BspACI CCGC 2 cut(s) 224, 509
BspANI GGCC 1 cut(s) 1094
BspCNI CTCAG 2 cut(s) 396, 479
BspDI ATCGAT 2 cut(s) 294, 373
BspFNI CGCG 1 cut(s) 460
BspLI GGNNCC 4 cut(s) 38, 564, 728, 1113
BspPI GGATC 1 cut(s) 839
BspT104I TTCGAA 1 cut(s) 490
BspT107I GGYRCC 1 cut(s) 1111
BsrBI CCGCTC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 531
BsrFI RCCGGY 1 cut(s) 553
BsrI ACTGG 4 cut(s) 87, 346, 634, 822
BssAI RCCGGY 1 cut(s) 553
BssECI CCNNGG 4 cut(s) 25, 41, 425, 426
BssMI GATC 2 cut(s) 150, 844
Bst2UI CCWGG 3 cut(s) 26, 43, 427
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 2 cut(s) 320, 1059
BstBI TTCGAA 1 cut(s) 490
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 4 cut(s) 123, 404, 466, 638
BstF5I GGATG 2 cut(s) 82, 265
BstFNI CGCG 1 cut(s) 460
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 2 cut(s) 153, 847
BstMAI GTCTC 3 cut(s) 270, 890, 1061
BstMBI GATC 2 cut(s) 150, 844
BstMWI GCNNNNNNNGC 2 cut(s) 828, 1091
BstNI CCWGG 3 cut(s) 26, 43, 427
BstNSI RCATGY 1 cut(s) 1034
BstSCI CCNGG 3 cut(s) 24, 41, 425
BstUI CGCG 1 cut(s) 460
BstXI CCANNNNNNTGG 1 cut(s) 32
Bsu15I ATCGAT 2 cut(s) 294, 373
BsuI GTATCC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 1094
BsuTUI ATCGAT 2 cut(s) 294, 373
BtrI CACGTC 1 cut(s) 900
BtsCI GGATG 2 cut(s) 82, 265
BtsIMutI CAGTG 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 462
CfoI GCGC 1 cut(s) 487
Cfr10I RCCGGY 1 cut(s) 553
Cfr13I GGNCC 3 cut(s) 563, 727, 839
ClaI ATCGAT 2 cut(s) 294, 373
CseI GACGC 2 cut(s) 651, 682
Csp6I GTAC 2 cut(s) 8, 117
CspAI ACCGGT 1 cut(s) 553
CviAII CATG 5 cut(s) 576, 970, 983, 1031, 1096
CviJI RGCY 9 cut(s) 122, 288, 530, 550, 580, 822, 836, 1094, 1119
CviKI_1 RGCY 9 cut(s) 122, 288, 530, 550, 580, 822, 836, 1094, 1119
CviQI GTAC 2 cut(s) 8, 117
DdeI CTNAG 4 cut(s) 123, 404, 466, 638
DpnI GATC 2 cut(s) 152, 846
DpnII GATC 2 cut(s) 150, 844
DraI TTTAAA 1 cut(s) 958
EaeI YGGCCR 1 cut(s) 1092
Eam1104I CTCTTC 2 cut(s) 320, 1059
EarI CTCTTC 2 cut(s) 320, 1059
Eco24I GRGCYC 1 cut(s) 1121
Eco47I GGWCC 3 cut(s) 563, 727, 839
Eco57I CTGAAG 1 cut(s) 678
Eco88I CYCGRG 1 cut(s) 882
EcoRII CCWGG 3 cut(s) 24, 41, 425
EcoT22I ATGCAT 1 cut(s) 1087
EcoT38I GRGCYC 1 cut(s) 1121
Esp3I CGTCTC 2 cut(s) 890, 1061
FaeI CATG 5 cut(s) 579, 973, 986, 1034, 1099
FaqI GGGAC 2 cut(s) 576, 740
FatI CATG 5 cut(s) 575, 969, 982, 1030, 1095
FauI CCCGC 2 cut(s) 217, 502
FokI GGATG 2 cut(s) 69, 272
FriOI GRGCYC 1 cut(s) 1121
FspBI CTAG 2 cut(s) 360, 1156
GlaI GCGC 1 cut(s) 486
GsaI CCCAGC 3 cut(s) 584, 662, 826
HaeIII GGCC 1 cut(s) 1094
HapII CCGG 1 cut(s) 554
HgaI GACGC 2 cut(s) 651, 682
HhaI GCGC 1 cut(s) 487
Hin1II CATG 5 cut(s) 579, 973, 986, 1034, 1099
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HincII GTYRAC 1 cut(s) 975
HindII GTYRAC 1 cut(s) 975
HpaII CCGG 1 cut(s) 554
HphI GGTGA 2 cut(s) 557, 682
Hpy166II GTNNAC 2 cut(s) 339, 975
Hpy188I TCNGA 6 cut(s) 150, 283, 405, 469, 504, 697
Hpy188III TCNNGA 3 cut(s) 142, 725, 994
Hpy8I GTNNAC 2 cut(s) 339, 975
Hpy99I CGWCG 2 cut(s) 667, 762
HpyAV CCTTC 6 cut(s) 241, 486, 661, 696, 1113, 1146
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 3 cut(s) 760, 899, 1151
HpyCH4V TGCA 9 cut(s) 167, 412, 517, 801, 874, 986, 1034, 1085, 1099
HpyF10VI GCNNNNNNNGC 2 cut(s) 828, 1091
HpyF3I CTNAG 4 cut(s) 123, 404, 466, 638
HpySE526I ACGT 3 cut(s) 760, 899, 1151
Hsp92II CATG 5 cut(s) 579, 973, 986, 1034, 1099
HspAI GCGC 1 cut(s) 485
Kzo9I GATC 2 cut(s) 150, 844
LweI GCATC 1 cut(s) 1072
MaeI CTAG 2 cut(s) 360, 1156
MaeII ACGT 3 cut(s) 760, 899, 1151
MaeIII GTNAC 2 cut(s) 298, 670
MalI GATC 2 cut(s) 152, 846
MbiI CCGCTC 1 cut(s) 224
MboI GATC 2 cut(s) 150, 844
MboII GAAGA 4 cut(s) 337, 757, 1076, 1084
MhlI GDGCHC 2 cut(s) 833, 1121
MlsI TGGCCA 1 cut(s) 1094
MluCI AATT 8 cut(s) 453, 473, 569, 623, 776, 869, 988, 1058
MluNI TGGCCA 1 cut(s) 1094
MlyI GAGTC 6 cut(s) 51, 415, 508, 548, 803, 917
MmeI TCCRAC 5 cut(s) 311, 415, 597, 623, 696
Mox20I TGGCCA 1 cut(s) 1094
Mph1103I ATGCAT 1 cut(s) 1087
MscI TGGCCA 1 cut(s) 1094
MseI TTAA 5 cut(s) 101, 192, 395, 957, 1088
MslI CAYNNNNRTG 2 cut(s) 87, 294
Msp20I TGGCCA 1 cut(s) 1094
MspI CCGG 1 cut(s) 554
MspR9I CCNGG 3 cut(s) 26, 43, 427
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 3 cut(s) 26, 43, 427
MvnI CGCG 1 cut(s) 460
MwoI GCNNNNNNNGC 2 cut(s) 828, 1091
NdeII GATC 2 cut(s) 150, 844
NlaIII CATG 5 cut(s) 579, 973, 986, 1034, 1099
NlaIV GGNNCC 4 cut(s) 38, 564, 728, 1113
NmuCI GTSAC 2 cut(s) 298, 670
NsiI ATGCAT 1 cut(s) 1087
NspI RCATGY 1 cut(s) 1034
NspV TTCGAA 1 cut(s) 490
PasI CCCWGGG 1 cut(s) 426
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 4 cut(s) 145, 370, 586, 682
PinAI ACCGGT 1 cut(s) 553
PleI GAGTC 6 cut(s) 51, 414, 507, 547, 802, 916
PpsI GAGTC 6 cut(s) 51, 414, 507, 547, 802, 916
PshBI ATTAAT 1 cut(s) 1088
Psp1406I AACGTT 1 cut(s) 1151
Psp6I CCWGG 3 cut(s) 24, 41, 425
PspFI CCCAGC 3 cut(s) 580, 658, 822
PspGI CCWGG 3 cut(s) 24, 41, 425
PspN4I GGNNCC 4 cut(s) 38, 564, 728, 1113
PspPI GGNCC 3 cut(s) 563, 727, 839
RsaI GTAC 2 cut(s) 9, 118
RsaNI GTAC 2 cut(s) 8, 117
RseI CAYNNNNRTG 2 cut(s) 87, 294
SaqAI TTAA 5 cut(s) 101, 192, 395, 957, 1088
Sau3AI GATC 2 cut(s) 150, 844
Sau96I GGNCC 3 cut(s) 563, 727, 839
SchI GAGTC 6 cut(s) 51, 415, 508, 548, 803, 917
ScrFI CCNGG 3 cut(s) 26, 43, 427
SduI GDGCHC 2 cut(s) 833, 1121
SfaNI GCATC 1 cut(s) 1072
SfuI TTCGAA 1 cut(s) 490
SinI GGWCC 3 cut(s) 563, 727, 839
SmiMI CAYNNNNRTG 2 cut(s) 87, 294
Sse9I AATT 8 cut(s) 453, 473, 569, 623, 776, 869, 988, 1058
SsiI CCGC 2 cut(s) 224, 509
SspI AATATT 1 cut(s) 940
SspMI CTAG 2 cut(s) 360, 1156
StyD4I CCNGG 3 cut(s) 24, 41, 425
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 3 cut(s) 763, 902, 1154
TaqI TCGA 6 cut(s) 177, 294, 373, 490, 665, 918
TaqII GACCGA 1 cut(s) 580
TasI AATT 8 cut(s) 453, 473, 569, 623, 776, 869, 988, 1058
TatI WGTACW 1 cut(s) 7
TfiI GAWTC 4 cut(s) 145, 370, 586, 682
Tru1I TTAA 5 cut(s) 101, 192, 395, 957, 1088
Tru9I TTAA 5 cut(s) 101, 192, 395, 957, 1088
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 2 cut(s) 298, 670
Tsp45I GTSAC 2 cut(s) 298, 670
TspDTI ATGAA 5 cut(s) 17, 465, 939, 958, 1034
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 3 cut(s) 563, 727, 839
VspI ATTAAT 1 cut(s) 1088
XapI RAATTY 5 cut(s) 453, 569, 623, 776, 988
XceI RCATGY 1 cut(s) 1034
XspI CTAG 2 cut(s) 360, 1156
Zsp2I ATGCAT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.