Rroxscaffold_6G00403950

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000619
Physical Location & Seq
Forward (+)
26384233 .. 26388831
4599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403950.1

Sequence Viewer

Length: 417 bp
ATGGATGTTTTGTGTTGGAACTGCCAAGGGATTGGGAACCACCCTTGGACAGTTAAAGGGCTCAAAGGGTTGATTTCCCTAACTCATCCCAATTTAATTTTTTTGTTGGAAACAAGGTGTACTGTAGGTGAAATGGTGGAGATTAAGGTTCAGCTTGGGTGGCGTCATGCATTTGTTGTACCATGTACTTTCAAGCAAAAGAAGTCTGGGAAGGGTGTAAGCAGGTCGGGTGGTTTGTGTCTTCTTTGGAACGATGATACTCCGGTCTCTCTGCGTAGTTACTCTAATAATCATGTGGATGTTACTGTGGGTAAGGCCTCGGATCCGAAGAGATGGAGATTTACTGGAGTTTATGGGTTCCTTAGAGTAGAAGATCGTCATAAAACTTGGTCTCTTATCAAAACCCTAGGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

138

Amino Acids

15.58

Weight (kDa)

9.63

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 213
AclWI GGATC 2 cut(s) 317, 330
AcyI GRCGYC 1 cut(s) 163
AfaI GTAC 3 cut(s) 121, 180, 187
AgsI TTSAA 1 cut(s) 193
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 271, 396
AlwI GGATC 2 cut(s) 317, 330
AoxI GGCC 1 cut(s) 315
AspA2I CCTAGG 1 cut(s) 406
AsuHPI GGTGA 1 cut(s) 140
AvrII CCTAGG 1 cut(s) 406
BaeI ACNNNNGTAYC 2 cut(s) 249, 282
BamHI GGATCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 233
BccI CCATC 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 271, 396
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 213
BlnI CCTAGG 1 cut(s) 406
BmiI GGNNCC 3 cut(s) 38, 324, 359
BpiI GAAGAC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 163
BsaI GGTCTC 2 cut(s) 271, 396
BsaJI CCNNGG 4 cut(s) 25, 44, 318, 406
BsaWI WCCGGW 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 349
BseDI CCNNGG 4 cut(s) 25, 44, 318, 406
BseGI GGATG 3 cut(s) 10, 85, 304
BseNI ACTGG 1 cut(s) 349
BshFI GGCC 1 cut(s) 317
BsiSI CCGG 1 cut(s) 263
BsmAI GTCTC 2 cut(s) 271, 396
BsnI GGCC 1 cut(s) 317
Bso31I GGTCTC 2 cut(s) 271, 396
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 2 cut(s) 322, 373
BspANI GGCC 1 cut(s) 317
BspLI GGNNCC 3 cut(s) 38, 324, 359
BspMI ACCTGC 1 cut(s) 213
BspPI GGATC 2 cut(s) 317, 330
BspTNI GGTCTC 2 cut(s) 271, 396
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 4 cut(s) 25, 44, 318, 406
BssMI GATC 2 cut(s) 322, 373
BssNI GRCGYC 1 cut(s) 163
BssT1I CCWWGG 3 cut(s) 25, 44, 406
Bst4CI ACNGT 3 cut(s) 52, 124, 307
Bst6I CTCTTC 1 cut(s) 323
BstACI GRCGYC 1 cut(s) 163
BstDEI CTNAG 1 cut(s) 362
BstF5I GGATG 3 cut(s) 10, 85, 304
BstKTI GATC 2 cut(s) 325, 376
BstMAI GTCTC 2 cut(s) 271, 396
BstMBI GATC 2 cut(s) 322, 373
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 322
BstXI CCANNNNNNTGG 1 cut(s) 32
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 1 cut(s) 317
BtsCI GGATG 3 cut(s) 10, 85, 304
BveI ACCTGC 1 cut(s) 213
CseI GACGC 1 cut(s) 152
Csp6I GTAC 3 cut(s) 120, 179, 186
CviAII CATG 3 cut(s) 167, 183, 293
CviJI RGCY 3 cut(s) 61, 154, 317
CviKI_1 RGCY 3 cut(s) 61, 154, 317
CviQI GTAC 3 cut(s) 120, 179, 186
DdeI CTNAG 1 cut(s) 362
DpnI GATC 2 cut(s) 324, 375
DpnII GATC 2 cut(s) 322, 373
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Eco130I CCWWGG 3 cut(s) 25, 44, 406
Eco147I AGGCCT 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 63
Eco31I GGTCTC 2 cut(s) 271, 396
EcoT14I CCWWGG 3 cut(s) 25, 44, 406
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 3 cut(s) 25, 44, 406
FaeI CATG 3 cut(s) 170, 186, 296
FaiI YATR 6 cut(s) 168, 184, 294, 354, 381, 415
FatI CATG 3 cut(s) 166, 182, 292
FokI GGATG 3 cut(s) 17, 72, 311
FriOI GRGCYC 1 cut(s) 63
FspBI CTAG 1 cut(s) 407
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 1 cut(s) 317
HapII CCGG 1 cut(s) 263
HgaI GACGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 3 cut(s) 170, 186, 296
HpaII CCGG 1 cut(s) 263
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 2 cut(s) 322, 327
Hpy8I GTNNAC 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 3 cut(s) 52, 124, 307
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 1 cut(s) 362
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 3 cut(s) 170, 186, 296
Kzo9I GATC 2 cut(s) 322, 373
LpnPI CCDG 4 cut(s) 192, 208, 276, 330
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 2 cut(s) 278, 301
MalI GATC 2 cut(s) 324, 375
MboI GATC 2 cut(s) 322, 373
MboII GAAGA 3 cut(s) 233, 340, 383
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 2 cut(s) 91, 96
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 1 cut(s) 328
Mph1103I ATGCAT 1 cut(s) 172
MseI TTAA 3 cut(s) 54, 95, 144
MslI CAYNNNNRTG 1 cut(s) 297
MspI CCGG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 2 cut(s) 322, 373
NlaIII CATG 3 cut(s) 170, 186, 296
NlaIV GGNNCC 3 cut(s) 38, 324, 359
NsiI ATGCAT 1 cut(s) 172
PceI AGGCCT 1 cut(s) 317
PspN4I GGNNCC 3 cut(s) 38, 324, 359
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 3 cut(s) 121, 180, 187
RsaNI GTAC 3 cut(s) 120, 179, 186
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 3 cut(s) 54, 95, 144
Sau3AI GATC 2 cut(s) 322, 373
SduI GDGCHC 1 cut(s) 63
SetI ASST 5 cut(s) 119, 130, 150, 156, 227
SfcI CTRYAG 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 297
Sse9I AATT 2 cut(s) 91, 96
SseBI AGGCCT 1 cut(s) 317
SspMI CTAG 1 cut(s) 407
StuI AGGCCT 1 cut(s) 317
StyI CCWWGG 3 cut(s) 25, 44, 406
TaaI ACNGT 3 cut(s) 52, 124, 307
TasI AATT 2 cut(s) 91, 96
TatI WGTACW 2 cut(s) 119, 185
Tru1I TTAA 3 cut(s) 54, 95, 144
Tru9I TTAA 3 cut(s) 54, 95, 144
XmaJI CCTAGG 1 cut(s) 406
XspI CTAG 1 cut(s) 407
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.