Rmu_co8265215.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8265215.1
OG0000619
Physical Location & Seq
Reverse (-)
131 .. 409
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8265215.1_g000001.1.cds

Sequence Viewer

Length: 279 bp
atggatgaattcaaacgagctttgagagattgtgctttgaccaccatgaatgcacagggaccatatttcacgtggaggggcattaggcataaagttgaggtccaggtgagactagaccgctttgttactagtaattcttggcgtgacttgtttcctaagtctagagtgatccacttatctcccaatgagtcagatcacctttccattctgttggaggtgaggaaagtaaggaaaaggaggaggaaacgtaggaagaggtttcgctttgaggaattctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

92

Amino Acids

11.35

Weight (kDa)

11.39

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 118
AclWI GGATC 1 cut(s) 163
AcsI RAATTY 2 cut(s) 8, 272
AcvI CACGTG 1 cut(s) 72
AgsI TTSAA 1 cut(s) 13
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 1 cut(s) 163
ApoI RAATTY 2 cut(s) 8, 272
AspS9I GGNCC 2 cut(s) 59, 100
AsuHPI GGTGA 3 cut(s) 118, 188, 229
AvaII GGWCC 2 cut(s) 59, 100
BbrPI CACGTG 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 103
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 4 cut(s) 113, 129, 162, 277
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 2 cut(s) 59, 100
BmgT120I GGNCC 2 cut(s) 59, 100
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
BseBI CCWGG 1 cut(s) 104
BseGI GGATG 1 cut(s) 10
BseRI GAGGAG 1 cut(s) 253
BslFI GGGAC 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 55
Bsp143I GATC 2 cut(s) 168, 193
BspACI CCGC 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 1 cut(s) 163
BssMI GATC 2 cut(s) 168, 193
Bst2UI CCWGG 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 171, 196
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 2 cut(s) 168, 193
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstXI CCANNNNNNTGG 1 cut(s) 211
BtsCI GGATG 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 59, 100
CviAII CATG 1 cut(s) 46
CviJI RGCY 1 cut(s) 20
CviKI_1 RGCY 1 cut(s) 20
DdeI CTNAG 1 cut(s) 156
DpnI GATC 2 cut(s) 170, 195
DpnII GATC 2 cut(s) 168, 193
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco47I GGWCC 2 cut(s) 59, 100
Eco72I CACGTG 1 cut(s) 72
EcoRI GAATTC 2 cut(s) 8, 272
EcoRII CCWGG 1 cut(s) 102
FaeI CATG 1 cut(s) 49
FaiI YATR 3 cut(s) 47, 64, 90
FaqI GGGAC 1 cut(s) 72
FatI CATG 1 cut(s) 45
FokI GGATG 1 cut(s) 17
FspBI CTAG 4 cut(s) 113, 129, 162, 277
Hin1II CATG 1 cut(s) 49
HinfI GANTC 1 cut(s) 188
HphI GGTGA 3 cut(s) 118, 188, 229
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 162
HpyCH4IV ACGT 2 cut(s) 71, 247
HpyCH4V TGCA 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 2 cut(s) 71, 247
Hsp92II CATG 1 cut(s) 49
Kzo9I GATC 2 cut(s) 168, 193
LpnPI CCDG 3 cut(s) 41, 89, 116
MaeI CTAG 4 cut(s) 113, 129, 162, 277
MaeII ACGT 2 cut(s) 71, 247
MaeIII GTNAC 2 cut(s) 124, 143
MalI GATC 2 cut(s) 170, 195
MboI GATC 2 cut(s) 168, 193
MboII GAAGA 1 cut(s) 265
MluCI AATT 3 cut(s) 8, 133, 272
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 8 cut(s) 69, 91, 208, 213, 231, 234, 249, 262
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 104
NdeII GATC 2 cut(s) 168, 193
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 143
PctI GAATGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 196
PmaCI CACGTG 1 cut(s) 72
PmlI CACGTG 1 cut(s) 72
PpsI GAGTC 1 cut(s) 196
Ppu21I YACGTR 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 102
PspCI CACGTG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 2 cut(s) 59, 100
Sau3AI GATC 2 cut(s) 168, 193
Sau96I GGNCC 2 cut(s) 59, 100
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 104
SetI ASST 8 cut(s) 22, 74, 102, 108, 201, 219, 250, 260
SinI GGWCC 2 cut(s) 59, 100
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 3 cut(s) 8, 133, 272
SsiI CCGC 1 cut(s) 118
SspMI CTAG 4 cut(s) 113, 129, 162, 277
StyD4I CCNGG 1 cut(s) 102
TaiI ACGT 2 cut(s) 74, 250
TasI AATT 3 cut(s) 8, 133, 272
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 21, 62
VpaK11BI GGWCC 2 cut(s) 59, 100
XapI RAATTY 2 cut(s) 8, 272
XbaI TCTAGA 1 cut(s) 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XspI CTAG 4 cut(s) 113, 129, 162, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.