FvH4_3g26084

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000619
Physical Location & Seq
Reverse (-)
18967113 .. 18968265
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26084.t1

Sequence Viewer

Length: 663 bp
ATGTACAGAGGAGGAGATGAGGAAGGTAAAGCTGCAATTAGGGTTTATGAATGCTTTTATGGTTCCATGCAAGAAGTTGGTAACAAGGAAGGGGAAGAGGGGATCTATGGTCACCCAAAAACTGAACAAAGGTACCAGATGTGGAATTTGTTATGTAGTTTAATGGGAAAGAATTCATTACCCTGGATCATTGGAGGGGACTTCAACGAGATTACTTTGTTGAGTGAGAAAGAGGGTGGACTCAGACGAAGAAGCAGACAAATGGATGATTTTGTTAAGGCGTTAAGGGACTATGGTGTAGGGGATATGCGGTTTTTTGGACCACGTTTTATGTGGGAAGGTAATCGTCATGGTCACCATGTGAAGGAAAGGTTAGATCGGAAACGTAAAAGAAGAAAACAGCGAAGGAAGAAGAGGTCTAGGTTTGAGGAGTTTTGGTTAAGGGAGGAAGATTGTAGAAAGGTGGTGGAGACAGGTTGGGAGTGTGGGACCGGGAGCGACCCTGTGTCAAAGAGGGCAACAAATAAAAAGAAGAAGAATTCTCTTAAAGGTCTGAAGGATAAGCAAGGAGTTTGGAAGACAGATGAGGAGGAAGTGGAGGCAATAGTGTTGTCGTATTATACATACCTGTTTAAATCGAGCTTGCCTTCACATATTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

221

Amino Acids

25.99

Weight (kDa)

9.45

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 132
AciI CCGC 1 cut(s) 310
AclWI GGATC 2 cut(s) 110, 194
AcsI RAATTY 3 cut(s) 145, 172, 538
AcuI CTGAAG 1 cut(s) 575
AdeI CACNNNGTG 1 cut(s) 361
AfaI GTAC 2 cut(s) 5, 134
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 2 cut(s) 205, 659
AhdI GACNNNNNGTC 1 cut(s) 505
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 2 cut(s) 32, 642
AluI AGCT 2 cut(s) 32, 642
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 2 cut(s) 110, 194
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 3 cut(s) 145, 172, 538
Asp700I GAANNNNTTC 1 cut(s) 172
Asp718I GGTACC 1 cut(s) 132
AspS9I GGNCC 2 cut(s) 320, 489
AsuC2I CCSGG 1 cut(s) 493
AsuHPI GGTGA 2 cut(s) 104, 347
AvaII GGWCC 2 cut(s) 320, 489
BaeI ACNNNNGTAYC 2 cut(s) 116, 149
BanI GGYRCC 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 584
BbvI GCAGC 1 cut(s) 19
BciT130I CCWGG 1 cut(s) 184
BcnI CCSGG 1 cut(s) 493
BcoDI GTCTC 1 cut(s) 464
BfaI CTAG 1 cut(s) 420
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 2 cut(s) 184, 493
Bme18I GGWCC 2 cut(s) 320, 489
BmeRI GACNNNNNGTC 1 cut(s) 505
BmgT120I GGNCC 2 cut(s) 320, 489
BmiI GGNNCC 3 cut(s) 64, 134, 490
BmrFI CCNGG 2 cut(s) 184, 493
BpiI GAAGAC 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 493
BsaJI CCNNGG 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 422, 452
Bsc4I CCNNNNNNNGG 1 cut(s) 364
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 256
BseRI GAGGAG 4 cut(s) 24, 27, 443, 602
BseXI GCAGC 1 cut(s) 19
BshNI GGYRCC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 492
BslFI GGGAC 3 cut(s) 212, 302, 502
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 3 cut(s) 212, 302, 502
BsmI GAATGC 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 102, 186, 376
BspACI CCGC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 255
BspLI GGNNCC 3 cut(s) 64, 134, 490
BspPI GGATC 2 cut(s) 110, 194
BspT107I GGYRCC 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 3 cut(s) 102, 186, 376
Bst2UI CCWGG 1 cut(s) 184
Bst6I CTCTTC 2 cut(s) 90, 407
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 644
BstDEI CTNAG 1 cut(s) 242
BstEII GGTNACC 2 cut(s) 110, 353
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 3 cut(s) 105, 189, 379
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 3 cut(s) 102, 186, 376
BstNI CCWGG 1 cut(s) 184
BstPI GGTNACC 2 cut(s) 110, 353
BstSCI CCNGG 2 cut(s) 182, 491
BstV1I GCAGC 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 584
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BtsCI GGATG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 644
Cfr13I GGNCC 2 cut(s) 320, 489
Csp6I GTAC 2 cut(s) 4, 133
CviAII CATG 3 cut(s) 67, 350, 359
CviJI RGCY 2 cut(s) 32, 642
CviKI_1 RGCY 2 cut(s) 32, 642
CviQI GTAC 2 cut(s) 4, 133
DdeI CTNAG 1 cut(s) 242
DpnI GATC 3 cut(s) 104, 188, 378
DpnII GATC 3 cut(s) 102, 186, 376
DraI TTTAAA 1 cut(s) 634
DraIII CACNNNGTG 1 cut(s) 361
DriI GACNNNNNGTC 1 cut(s) 505
Eam1104I CTCTTC 2 cut(s) 90, 407
Eam1105I GACNNNNNGTC 1 cut(s) 505
EarI CTCTTC 2 cut(s) 90, 407
Eco47I GGWCC 2 cut(s) 320, 489
Eco57I CTGAAG 1 cut(s) 575
Eco91I GGTNACC 2 cut(s) 110, 353
EcoO65I GGTNACC 2 cut(s) 110, 353
EcoRI GAATTC 2 cut(s) 172, 538
EcoRII CCWGG 1 cut(s) 182
FaeI CATG 3 cut(s) 70, 353, 362
FaqI GGGAC 3 cut(s) 212, 302, 502
FatI CATG 3 cut(s) 66, 349, 358
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 1 cut(s) 420
GluI GCNGC 1 cut(s) 33
HapII CCGG 1 cut(s) 492
Hin1II CATG 3 cut(s) 70, 353, 362
HinfI GANTC 1 cut(s) 240
HpaII CCGG 1 cut(s) 492
HphI GGTGA 2 cut(s) 104, 347
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 3 cut(s) 245, 381, 555
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 7 cut(s) 17, 83, 332, 358, 399, 550, 657
HpyCH4IV ACGT 2 cut(s) 325, 385
HpyCH4V TGCA 2 cut(s) 35, 70
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 2 cut(s) 325, 385
Hsp92II CATG 3 cut(s) 70, 353, 362
KpnI GGTACC 1 cut(s) 136
Kzo9I GATC 3 cut(s) 102, 186, 376
LmnI GCTCC 1 cut(s) 495
LpnPI CCDG 7 cut(s) 149, 169, 196, 459, 505, 516, 641
Lsp1109I GCAGC 1 cut(s) 19
MaeI CTAG 1 cut(s) 420
MaeII ACGT 2 cut(s) 325, 385
MaeIII GTNAC 3 cut(s) 80, 110, 353
MalI GATC 3 cut(s) 104, 188, 378
MboI GATC 3 cut(s) 102, 186, 376
MboII GAAGA 9 cut(s) 107, 261, 405, 421, 424, 461, 544, 547, 589
MflI RGATCY 1 cut(s) 102
MluCI AATT 4 cut(s) 36, 145, 172, 538
MlyI GAGTC 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 172
MseI TTAA 6 cut(s) 161, 276, 284, 440, 546, 633
MspI CCGG 1 cut(s) 492
MspR9I CCNGG 2 cut(s) 184, 493
Mva1269I GAATGC 1 cut(s) 56
MvaI CCWGG 1 cut(s) 184
NciI CCSGG 1 cut(s) 493
NdeII GATC 3 cut(s) 102, 186, 376
NlaIII CATG 3 cut(s) 70, 353, 362
NlaIV GGNNCC 3 cut(s) 64, 134, 490
NmuCI GTSAC 2 cut(s) 110, 353
PctI GAATGC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 182
PspEI GGTNACC 2 cut(s) 110, 353
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 3 cut(s) 64, 134, 490
PspPI GGNCC 2 cut(s) 320, 489
PsuI RGATCY 1 cut(s) 102
RsaI GTAC 2 cut(s) 5, 134
RsaNI GTAC 2 cut(s) 4, 133
SaqAI TTAA 6 cut(s) 161, 276, 284, 440, 546, 633
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 3 cut(s) 102, 186, 376
Sau96I GGNCC 2 cut(s) 320, 489
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 2 cut(s) 184, 493
SinI GGWCC 2 cut(s) 320, 489
Sse9I AATT 4 cut(s) 36, 145, 172, 538
SsiI CCGC 1 cut(s) 310
SspMI CTAG 1 cut(s) 420
StyD4I CCNGG 2 cut(s) 182, 491
TaiI ACGT 2 cut(s) 328, 388
TaqI TCGA 1 cut(s) 638
TasI AATT 4 cut(s) 36, 145, 172, 538
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 6 cut(s) 161, 276, 284, 440, 546, 633
Tru9I TTAA 6 cut(s) 161, 276, 284, 440, 546, 633
TseFI GTSAC 2 cut(s) 110, 353
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 2 cut(s) 110, 353
TspDTI ATGAA 2 cut(s) 63, 165
VpaK11BI GGWCC 2 cut(s) 320, 489
XapI RAATTY 3 cut(s) 145, 172, 538
XcmI CCANNNNNNNNNTGG 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 172
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.