Rmu_sc0005861.1_g000009

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005861.1
OG0000619
Physical Location & Seq
Reverse (-)
33698 .. 34512
815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005861.1_g000009.1.cds

Sequence Viewer

Length: 690 bp
atgaatgtgttgtgttggaactgccaagggatctggaacccttggacagtgcatgggctgaaagagctagtggtcctcaactttcccgacttgatttttcttactgagacaaagtgtactgtacaagagattgatagagttcattttcaaattggctttaaaaacgtgttggcattcccgtgtaagatggaaagaaatcccaatggaaggataaccaaggcttgtggagtgtgtcttctgtggaaggaggatgttgatgtagcgcttcgctcatactcggagcaccacatcgacgttctagtgggtagtgtgggggatgttaatagatggcatttcactgggttttatgggcaccctaaagttgaacaaagacatgaaacgtggaatttgctcaggaggttagggcaaaacaatggcttcccttggattgtagggggagacttcaacgagattctacgtgcactagaaaaagaagggggtccacctagatgtataaggcagatggaggtgttccaaagttgtgcggatgattgcttcaaggtgaagcatcttaacccgtccaagtctgatcaccttcccatcttattggaagtgcgtataatggggccaaggcagagaaggaagaagaaacgattccggttcgaaaaattttggcttcaggaggaggactgtggtggcatcataaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

229

Amino Acids

26.77

Weight (kDa)

8.81

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 351
AciI CCGC 1 cut(s) 524
AclWI GGATC 1 cut(s) 38
AcsI RAATTY 2 cut(s) 385, 647
AcuI CTGAAG 1 cut(s) 641
AfaI GTAC 2 cut(s) 118, 123
AfeI AGCGCT 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 207
AflIII ACRYGT 1 cut(s) 165
AgsI TTSAA 4 cut(s) 149, 365, 445, 538
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw21I GWGCWC 2 cut(s) 285, 463
Alw26I GTCTC 2 cut(s) 101, 432
Alw44I GTGCAC 1 cut(s) 459
AlwI GGATC 1 cut(s) 38
Aor51HI AGCGCT 1 cut(s) 264
AoxI GGCC 1 cut(s) 605
ApaLI GTGCAC 1 cut(s) 459
ApoI RAATTY 2 cut(s) 385, 647
Asp700I GAANNNNTTC 1 cut(s) 632
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 3 cut(s) 73, 479, 605
AsuHPI GGTGA 2 cut(s) 553, 563
AsuII TTCGAA 1 cut(s) 642
AvaII GGWCC 2 cut(s) 73, 479
BaeGI GKGCMC 2 cut(s) 354, 463
BanI GGYRCC 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 2 cut(s) 285, 463
BccI CCATC 4 cut(s) 181, 321, 496, 587
BclI TGATCA 1 cut(s) 568
BcoDI GTCTC 2 cut(s) 101, 432
BfaI CTAG 4 cut(s) 68, 299, 464, 486
BfoI RGCGCY 1 cut(s) 266
Bme18I GGWCC 2 cut(s) 73, 479
BmgT120I GGNCC 3 cut(s) 73, 479, 605
BmiI GGNNCC 4 cut(s) 38, 353, 480, 606
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 556
BmuI ACTGGG 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 392
Bpu14I TTCGAA 1 cut(s) 642
BsaAI YACGTR 1 cut(s) 458
BsaJI CCNNGG 5 cut(s) 25, 41, 216, 422, 608
BsaWI WCCGGW 1 cut(s) 636
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 343
BseDI CCNNGG 5 cut(s) 25, 41, 216, 422, 608
BseGI GGATG 3 cut(s) 256, 322, 532
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 96, 406
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 1 cut(s) 677
BseSI GKGCMC 2 cut(s) 354, 463
BshFI GGCC 1 cut(s) 607
BshNI GGYRCC 1 cut(s) 351
BsiHKAI GWGCWC 2 cut(s) 285, 463
BsiSI CCGG 1 cut(s) 637
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 2 cut(s) 101, 432
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 1 cut(s) 607
Bsp119I TTCGAA 1 cut(s) 642
Bsp1286I GDGCHC 3 cut(s) 285, 354, 463
Bsp1407I TGTACA 1 cut(s) 121
Bsp143I GATC 2 cut(s) 30, 568
BspACI CCGC 1 cut(s) 524
BspANI GGCC 1 cut(s) 607
BspCNI CTCAG 2 cut(s) 97, 405
BspLI GGNNCC 4 cut(s) 38, 353, 480, 606
BspPI GGATC 1 cut(s) 38
BspT104I TTCGAA 1 cut(s) 642
BspT107I GGYRCC 1 cut(s) 351
BsrGI TGTACA 1 cut(s) 121
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 5 cut(s) 25, 41, 216, 422, 608
BssMI GATC 2 cut(s) 30, 568
BssT1I CCWWGG 5 cut(s) 25, 41, 216, 422, 608
Bst4CI ACNGT 3 cut(s) 49, 121, 671
BstAUI TGTACA 1 cut(s) 121
BstBAI YACGTR 1 cut(s) 458
BstBI TTCGAA 1 cut(s) 642
BstDEI CTNAG 2 cut(s) 105, 392
BstF5I GGATG 3 cut(s) 256, 322, 532
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 2 cut(s) 33, 571
BstMAI GTCTC 2 cut(s) 101, 432
BstMBI GATC 2 cut(s) 30, 568
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstSLI GKGCMC 2 cut(s) 354, 463
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 586
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 1 cut(s) 607
BtsCI GGATG 3 cut(s) 256, 322, 532
BtsIMutI CAGTG 2 cut(s) 54, 336
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 3 cut(s) 73, 479, 605
Csp6I GTAC 2 cut(s) 117, 122
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 2 cut(s) 53, 374
CviJI RGCY 7 cut(s) 58, 67, 156, 221, 417, 607, 655
CviKI_1 RGCY 7 cut(s) 58, 67, 156, 221, 417, 607, 655
CviQI GTAC 2 cut(s) 117, 122
DdeI CTNAG 2 cut(s) 105, 392
DpnI GATC 2 cut(s) 32, 570
DpnII GATC 2 cut(s) 30, 568
DraI TTTAAA 1 cut(s) 160
Eco130I CCWWGG 5 cut(s) 25, 41, 216, 422, 608
Eco47I GGWCC 2 cut(s) 73, 479
Eco47III AGCGCT 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 641
EcoT14I CCWWGG 5 cut(s) 25, 41, 216, 422, 608
ErhI CCWWGG 5 cut(s) 25, 41, 216, 422, 608
FaeI CATG 2 cut(s) 56, 377
FaiI YATR 7 cut(s) 54, 274, 348, 375, 494, 599, 683
FatI CATG 2 cut(s) 52, 373
FbaI TGATCA 1 cut(s) 568
FokI GGATG 3 cut(s) 263, 329, 539
FspBI CTAG 4 cut(s) 68, 299, 464, 486
GlaI GCGC 1 cut(s) 264
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 1 cut(s) 607
HapII CCGG 1 cut(s) 637
HhaI GCGC 1 cut(s) 265
Hin1II CATG 2 cut(s) 56, 377
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 2 cut(s) 451, 633
HpaII CCGG 1 cut(s) 637
HphI GGTGA 2 cut(s) 553, 563
Hpy166II GTNNAC 3 cut(s) 117, 461, 482
Hpy188I TCNGA 2 cut(s) 280, 568
Hpy188III TCNNGA 4 cut(s) 34, 86, 394, 659
Hpy8I GTNNAC 3 cut(s) 117, 461, 482
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 5 cut(s) 201, 238, 467, 584, 612
HpyCH4III ACNGT 3 cut(s) 49, 121, 671
HpyCH4IV ACGT 4 cut(s) 165, 294, 380, 457
HpyCH4V TGCA 2 cut(s) 52, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 2 cut(s) 105, 392
HpySE526I ACGT 4 cut(s) 165, 294, 380, 457
Hsp92II CATG 2 cut(s) 56, 377
HspAI GCGC 1 cut(s) 263
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 2 cut(s) 30, 568
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 5 cut(s) 19, 324, 379, 644, 650
LweI GCATC 1 cut(s) 556
MaeI CTAG 4 cut(s) 68, 299, 464, 486
MaeII ACGT 4 cut(s) 165, 294, 380, 457
MalI GATC 2 cut(s) 32, 570
MboI GATC 2 cut(s) 30, 568
MboII GAAGA 3 cut(s) 227, 634, 637
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 3 cut(s) 285, 354, 463
MluCI AATT 3 cut(s) 150, 385, 647
MnlI CCTC 6 cut(s) 86, 241, 390, 499, 655, 658
MroXI GAANNNNTTC 1 cut(s) 632
MseI TTAA 3 cut(s) 159, 321, 552
MslI CAYNNNNRTG 2 cut(s) 178, 487
MspI CCGG 1 cut(s) 637
Mva1269I GAATGC 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 2 cut(s) 30, 568
NlaIII CATG 2 cut(s) 56, 377
NlaIV GGNNCC 4 cut(s) 38, 353, 480, 606
NspV TTCGAA 1 cut(s) 642
PctI GAATGC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 632
PfeI GAWTC 2 cut(s) 451, 633
Ppu21I YACGTR 1 cut(s) 458
PspN4I GGNNCC 4 cut(s) 38, 353, 480, 606
PspPI GGNCC 3 cut(s) 73, 479, 605
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 2 cut(s) 118, 123
RsaNI GTAC 2 cut(s) 117, 122
RseI CAYNNNNRTG 2 cut(s) 178, 487
SaqAI TTAA 3 cut(s) 159, 321, 552
Sau3AI GATC 2 cut(s) 30, 568
Sau96I GGNCC 3 cut(s) 73, 479, 605
SduI GDGCHC 3 cut(s) 285, 354, 463
SfaNI GCATC 1 cut(s) 556
SfuI TTCGAA 1 cut(s) 642
SinI GGWCC 2 cut(s) 73, 479
SmiMI CAYNNNNRTG 2 cut(s) 178, 487
Sse9I AATT 3 cut(s) 150, 385, 647
SsiI CCGC 1 cut(s) 524
SspMI CTAG 4 cut(s) 68, 299, 464, 486
StyI CCWWGG 5 cut(s) 25, 41, 216, 422, 608
TaaI ACNGT 3 cut(s) 49, 121, 671
TaiI ACGT 4 cut(s) 168, 297, 383, 460
TaqI TCGA 2 cut(s) 291, 642
TasI AATT 3 cut(s) 150, 385, 647
TatI WGTACW 2 cut(s) 116, 121
TfiI GAWTC 2 cut(s) 451, 633
Tru1I TTAA 3 cut(s) 159, 321, 552
Tru9I TTAA 3 cut(s) 159, 321, 552
TscAI CASTG 2 cut(s) 54, 343
TspDTI ATGAA 3 cut(s) 17, 131, 390
TspRI CASTG 2 cut(s) 54, 343
VneI GTGCAC 1 cut(s) 459
VpaK11BI GGWCC 2 cut(s) 73, 479
XapI RAATTY 2 cut(s) 385, 647
XmnI GAANNNNTTC 1 cut(s) 632
XspI CTAG 4 cut(s) 68, 299, 464, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.