FvH4_4g08193

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000619
Physical Location & Seq
Forward (+)
8031866 .. 8033300
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08193.t1

Sequence Viewer

Length: 1143 bp
ATGAATGTTTTATGTTGGAAGTGTCAAGGGATCAGGAACCCTTCGACAGTAGATGGGCTGAAAGGGATTATTCCCCTAACCATTCCCGACATCGTGTTCCTAAGTGAGAGTCGATGTTTACAGAGAGTCGTTGAGAGATTGAAGAGAGAAGTGGGATTGAAGAATTTTATAGTGGTGGATTGTGACATAAACCAAAACCCTAATGGCAGGATGTCGAGGGCAGGCGGTATCTGTTTGCTTTGGAAGGAGGATGTGGAGGTGTCCTTGTTATCTTTCTCAAAAAACCATATTGATGTGTGGGTGGGAGGGGTGAACTCGGCGTCTCGGTGGCGGTTTACAGGGTTGTATGGTTTTTCAAAAGCGGAGGACAGACACAAGACATGGGCGCTTTTGCGTGAGCTGGGGAGTACCTTGAACGGTGCATGGTTGACATGGAAGGACTTGTTCCCAGCTTTGAAGGTCTCCCACCTCAAACCTTCGAAGTCGGATCATCTTTCCATCCTCGTTGAGATTCGGTCGGTTCAGGTGGAGGTAAGGAGGAAGAAGAAAAGGTGGAGGTTTGAAGGGTATTGGCTTCAGGATGAGGAATGTGGAGAGATGGTTCGTAGAGGGTGGCAAAGTTCGGAGTGTGTGAATGACTTCATGAAGGTTTGCCAGAAGATAAATAATACAAGAAAGGTTTTGGGGGAATGGAGTAAACTCAAGTTTGGGATTTTGAAAAAGGAAATCGAGCTCACTAGGTCCAAGTTAGCAGTATTCTATGAAAAGGCTCAGGGGAGTTATAGAGAGGAAGAATGTAAGGTTTTACAAGATAAGCTAAATGACTTACACCTTCATGAACAGCAGAGGGCGAAAGTTATGTGGTTGGTCGATGGAGACCAAAACACTAGCTACTTCCACCAAAAAGTCTGCAATAGAAAGAGGAAGAACACAATCAAGGGTTTGTTTAATGAGGAGGGAGTTTGGTGCTCGAGGGACTCTGAGCTTGAGGAGATAGTGCTGGGTTATTATGGGAGTCTTTTCACAACAAGCTCTCCCAAAAATATGGATATTTTTGCTAGTCTTTTTCAACTTGTGGTAACCTCGACGATAAACGAGGAGCTTAAAGAGTTTTCACAGAAGAAGAAGTCCATCGTGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

381

Amino Acids

44.08

Weight (kDa)

9.22

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 225, 331, 362
AclWI GGATC 2 cut(s) 38, 495
AcsI RAATTY 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 560
AcyI GRCGYC 1 cut(s) 320
AfaI GTAC 1 cut(s) 409
AgsI TTSAA 8 cut(s) 142, 160, 357, 415, 457, 563, 718, 1070
AloI GAACNNNNNNTCC 2 cut(s) 585, 617
AluBI AGCT 8 cut(s) 400, 452, 733, 817, 891, 985, 1032, 1102
AluI AGCT 8 cut(s) 400, 452, 733, 817, 891, 985, 1032, 1102
Alw21I GWGCWC 2 cut(s) 735, 971
Alw26I GTCTC 3 cut(s) 327, 466, 870
AlwI GGATC 2 cut(s) 38, 495
Ama87I CYCGRG 1 cut(s) 970
ApoI RAATTY 1 cut(s) 163
Asp700I GAANNNNTTC 1 cut(s) 638
AspLEI GCGC 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 741
AsuHPI GGTGA 1 cut(s) 322
AsuII TTCGAA 1 cut(s) 479
AvaI CYCGRG 1 cut(s) 970
AvaII GGWCC 1 cut(s) 741
BanII GRGCYC 1 cut(s) 735
Bbv12I GWGCWC 2 cut(s) 735, 971
BccI CCATC 5 cut(s) 47, 506, 592, 866, 1139
BcoDI GTCTC 3 cut(s) 327, 466, 870
BfaI CTAG 3 cut(s) 738, 888, 1059
BfoI RGCGCY 1 cut(s) 389
Bme18I GGWCC 1 cut(s) 741
BmeT110I CYCGRG 1 cut(s) 970
BmgT120I GGNCC 1 cut(s) 741
BmiI GGNNCC 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 771
Bpu14I TTCGAA 1 cut(s) 479
BpuEI CTTGAG 2 cut(s) 686, 1007
BsaHI GRCGYC 1 cut(s) 320
BsaI GGTCTC 2 cut(s) 466, 870
BsaXI ACNNNNNCTCC 4 cut(s) 585, 615, 1018, 1048
BseGI GGATG 4 cut(s) 216, 256, 498, 586
BseMII CTCAG 2 cut(s) 785, 972
BseRI GAGGAG 3 cut(s) 968, 1004, 1112
BseYI CCCAGC 3 cut(s) 400, 448, 1000
Bsh1285I CGRYCG 1 cut(s) 518
BsiEI CGRYCG 1 cut(s) 518
BsiHKAI GWGCWC 2 cut(s) 735, 971
BsiHKCI CYCGRG 1 cut(s) 970
BslFI GGGAC 1 cut(s) 989
BsmAI GTCTC 3 cut(s) 327, 466, 870
BsmBI CGTCTC 1 cut(s) 327
BsmFI GGGAC 1 cut(s) 989
Bso31I GGTCTC 2 cut(s) 466, 870
BsoBI CYCGRG 1 cut(s) 970
Bsp119I TTCGAA 1 cut(s) 479
Bsp1286I GDGCHC 2 cut(s) 735, 971
Bsp143I GATC 2 cut(s) 30, 487
BspACI CCGC 3 cut(s) 225, 331, 362
BspCNI CTCAG 2 cut(s) 784, 973
BspHI TCATGA 2 cut(s) 642, 835
BspLI GGNNCC 1 cut(s) 38
BspPI GGATC 2 cut(s) 38, 495
BspT104I TTCGAA 1 cut(s) 479
BspTNI GGTCTC 2 cut(s) 466, 870
BssMI GATC 2 cut(s) 30, 487
BssNI GRCGYC 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 49, 419
Bst6I CTCTTC 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 320
BstBI TTCGAA 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 3 cut(s) 101, 771, 981
BstEII GGTNACC 1 cut(s) 1078
BstF5I GGATG 4 cut(s) 216, 256, 498, 586
BstH2I RGCGCY 1 cut(s) 389
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 2 cut(s) 33, 490
BstMAI GTCTC 3 cut(s) 327, 466, 870
BstMBI GATC 2 cut(s) 30, 487
BstMCI CGRYCG 1 cut(s) 518
BstPI GGTNACC 1 cut(s) 1078
BstXI CCANNNNNNTGG 1 cut(s) 1045
BtsCI GGATG 4 cut(s) 216, 256, 498, 586
Cac8I GCNNGC 1 cut(s) 223
CciI TCATGA 2 cut(s) 642, 835
CfoI GCGC 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 741
CseI GACGC 1 cut(s) 309
Csp6I GTAC 1 cut(s) 408
CviAII CATG 5 cut(s) 381, 423, 432, 643, 836
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 3 cut(s) 101, 771, 981
DpnI GATC 2 cut(s) 32, 489
DpnII GATC 2 cut(s) 30, 487
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Ecl136II GAGCTC 1 cut(s) 733
Eco24I GRGCYC 1 cut(s) 735
Eco31I GGTCTC 2 cut(s) 466, 870
Eco47I GGWCC 1 cut(s) 741
Eco53kI GAGCTC 1 cut(s) 733
Eco57I CTGAAG 1 cut(s) 560
Eco88I CYCGRG 1 cut(s) 970
Eco91I GGTNACC 1 cut(s) 1078
EcoICRI GAGCTC 1 cut(s) 733
EcoO65I GGTNACC 1 cut(s) 1078
EcoT38I GRGCYC 1 cut(s) 735
Esp3I CGTCTC 1 cut(s) 327
FaeI CATG 5 cut(s) 384, 426, 435, 646, 839
FaqI GGGAC 1 cut(s) 989
FatI CATG 5 cut(s) 380, 422, 431, 642, 835
FokI GGATG 4 cut(s) 223, 263, 485, 593
FriOI GRGCYC 1 cut(s) 735
FspBI CTAG 3 cut(s) 738, 888, 1059
GlaI GCGC 1 cut(s) 387
GsaI CCCAGC 3 cut(s) 404, 452, 1004
HaeII RGCGCY 1 cut(s) 389
HgaI GACGC 1 cut(s) 309
HhaI GCGC 1 cut(s) 388
Hin1I GRCGYC 1 cut(s) 320
Hin1II CATG 5 cut(s) 384, 426, 435, 646, 839
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HincII GTYRAC 1 cut(s) 429
HindII GTYRAC 1 cut(s) 429
HinfI GANTC 5 cut(s) 109, 126, 511, 977, 1015
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 5 cut(s) 119, 313, 336, 429, 698
Hpy188I TCNGA 3 cut(s) 487, 625, 982
Hpy188III TCNNGA 5 cut(s) 34, 86, 578, 643, 836
Hpy8I GTNNAC 5 cut(s) 119, 313, 336, 429, 698
Hpy99I CGWCG 1 cut(s) 1090
HpyAV CCTTC 8 cut(s) 51, 238, 430, 451, 486, 557, 640, 842
HpyCH4III ACNGT 2 cut(s) 49, 419
HpyCH4V TGCA 2 cut(s) 422, 912
HpyF3I CTNAG 3 cut(s) 101, 771, 981
Hsp92I GRCGYC 1 cut(s) 320
Hsp92II CATG 5 cut(s) 384, 426, 435, 646, 839
HspAI GCGC 1 cut(s) 386
Kzo9I GATC 2 cut(s) 30, 487
LmnI GCTCC 1 cut(s) 1099
MaeI CTAG 3 cut(s) 738, 888, 1059
MaeIII GTNAC 2 cut(s) 182, 1078
MalI GATC 2 cut(s) 32, 489
MboI GATC 2 cut(s) 30, 487
MboII GAAGA 9 cut(s) 154, 172, 553, 556, 670, 803, 937, 1132, 1135
MhlI GDGCHC 2 cut(s) 735, 971
MluCI AATT 1 cut(s) 163
MlyI GAGTC 4 cut(s) 118, 135, 971, 1024
MmeI TCCRAC 1 cut(s) 465
MroXI GAANNNNTTC 1 cut(s) 638
MseI TTAA 3 cut(s) 948, 1104, 1141
MslI CAYNNNNRTG 2 cut(s) 291, 834
NdeII GATC 2 cut(s) 30, 487
NlaIII CATG 5 cut(s) 384, 426, 435, 646, 839
NlaIV GGNNCC 1 cut(s) 38
NmeAIII GCCGAG 1 cut(s) 296
NmuCI GTSAC 1 cut(s) 182
NspV TTCGAA 1 cut(s) 479
PaeR7I CTCGAG 1 cut(s) 970
PagI TCATGA 2 cut(s) 642, 835
PdmI GAANNNNTTC 1 cut(s) 638
PfeI GAWTC 1 cut(s) 511
PleI GAGTC 4 cut(s) 117, 134, 971, 1023
PpsI GAGTC 4 cut(s) 117, 134, 971, 1023
Psp124BI GAGCTC 1 cut(s) 735
PspEI GGTNACC 1 cut(s) 1078
PspFI CCCAGC 3 cut(s) 400, 448, 1000
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 741
PspXI VCTCGAGB 1 cut(s) 970
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
RseI CAYNNNNRTG 2 cut(s) 291, 834
SacI GAGCTC 1 cut(s) 735
SaqAI TTAA 3 cut(s) 948, 1104, 1141
Sau3AI GATC 2 cut(s) 30, 487
Sau96I GGNCC 1 cut(s) 741
SchI GAGTC 4 cut(s) 118, 135, 971, 1024
SduI GDGCHC 2 cut(s) 735, 971
Sfr274I CTCGAG 1 cut(s) 970
SfuI TTCGAA 1 cut(s) 479
SinI GGWCC 1 cut(s) 741
SlaI CTCGAG 1 cut(s) 970
SmiMI CAYNNNNRTG 2 cut(s) 291, 834
SmlI CTYRAG 3 cut(s) 701, 970, 986
SmoI CTYRAG 3 cut(s) 701, 970, 986
Sse9I AATT 1 cut(s) 163
SsiI CCGC 3 cut(s) 225, 331, 362
SspMI CTAG 3 cut(s) 738, 888, 1059
SstI GAGCTC 1 cut(s) 735
TaaI ACNGT 2 cut(s) 49, 419
TaqI TCGA 8 cut(s) 44, 112, 215, 479, 729, 870, 971, 1085
TaqII GACCGA 1 cut(s) 504
TasI AATT 1 cut(s) 163
TfiI GAWTC 1 cut(s) 511
Tru1I TTAA 3 cut(s) 948, 1104, 1141
Tru9I TTAA 3 cut(s) 948, 1104, 1141
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 6 cut(s) 17, 631, 659, 777, 824, 852
VpaK11BI GGWCC 1 cut(s) 741
XapI RAATTY 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XhoI CTCGAG 1 cut(s) 970
XmnI GAANNNNTTC 1 cut(s) 638
XspI CTAG 3 cut(s) 738, 888, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.